Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001274

Physical Location & Seq

Genomic Coordinates Forward (+)

90736815 .. 90742529

Gene Structure 5715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG529100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGGGCAGTAAAAGTAAGAGGATGAAACATTTAGACTACACGAGGAACCATTCTGTCCGTTCATCAATATCTCCTTCAAGCTCCGAGGATTCTAAACGCTTTTCCAAGACGCGTCATCTCCACCATCATGATGACACTTACAAAAGAGACCAACAAAGGCAAAGGGATAAGGCCGAGAAACAGAGGAGCAAAAGTGAGGCAAGGAGAATGAAATCGAAAGACAACGATAAGAAGAAGCAGAGCGCTTATGAGATTGATGATGATTCTGGGTCTTCGAGCGGTGGTGATCCGCAAGCGGTTCTGCGAGACTTGTTGAAGGAATTTCCTAATATTGGGTGCGATTTGAAGCAGCTTTTGCAAGTGATCGATGGGGGCAAAGCGGTTGACATAAATGGACTAGCTCAGAAACCTCTGATCAAGCCTCTCAGGACTCTGTTCCTTTGCTTGAATCTCAAGGAACTGAAGCACGGAGGTTTTGTATTGCCTCCAAATGTTCGTCCAACTTTGGAGGTTGTTGGTTCCATGATTACGCCTTCTTTAGATAATGTTGTTCCTCCTGAGAGAAGGCCAATTGGCCCGGAGAAGCCGTCGCCGGAGATACTTGATGCTGCAGCCAAATTGAGGGAGGCAGAGGCCGAGTTAAGGGAAGCTGAGTTGGAAGAAAAAGATGATGGGGTTTTTATTGGACCTGCACCACGTGCTGTGGCGGCTGAAGCTGAATCAGCTAACCAGGCTGACCGGTTTGAAGAGGTGACAAGGATCACGGAAGCAGAGGATGATTGCCCCTATGAGATACTAGGATCAAACCACAATGTGTCCGCTGATAACATCAAGAAAAGGTACTGGAAGTTGTCACTTTTGGTGCACCCTGATAAATGCTCACACCCTCAAGCCAACCAAGCATTTGTGAAGCTGAACAAGGCCTTTAAAGAGCTACAGGATCCGGAGAAGCGGAGAGCGCTGGATGAGAAGATTGAGCTCAGGGAGAAGCAGGAGAGATTCATTGTTGAGTTGAGGGCAATGCGGGAAGCAGCAATGTGGAGAAAGATGCAGGGGATTTCCATGGAGGGTGATGAGGAGCTACTGGCAGGTGATGTGAGTGGTGTTAAAGTGGCACGAAAAAGAGATGAGTGGATGACAGAGCTTCCACCAGAGAGGAAACATAGTATGAGTACAAGGCAGTCGACAATGTTTAGCAGGAGTGCTAAACAAGGGCGTGGGGATACCAGTGGATGGACTGATGCTCCTTCTGAAAGAGCTTGGAAAGCTAAGATGGAGTACTTACAAGCCTATAATGAGTTTGCATCACTTGCTTCGAATGAGGAGGAGAGGAAGAGGAGTTTAGTGGCAGAGTTGATGGACAATTACAAGAAAGATAAACGATCGAAATCATTGCTGCAAAAGCACCAAGAGGAGATTAGAGCAAAGAGAAAATACTCCAAGCAACAGGCAGAGGAGGAAGACTGGGTGGGGAAACATCCGTGGAAGCCTTGGGACCGTGAGAAAGATTTGGCAGGTGGTAGACAACGTGTGAAATTGGATTCAAAAAACATGACTCGAGGTTTGTCATCTCGGTTTTCTGGAGGATCATACCAGAGGAACTTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3752 DnaJ

Protein Analysis

536

Amino Acids

61.4

Weight (kDa)

9.23

Isoelectric Point (pI)

57.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	262 - 322	6.9e-18	DnaJ domain
DUF3752	PF12572	383 - 527	1e-22	Protein of unknown function (DUF3752)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65280 AT1G65280
fragaria_vesca	FvH4_3g44892 FvH4_3g44892 FvH4_3g44892 FvH4_3g44931 FvH4_3g44932 FvH4_3g44960 FvH4_3g44966 FvH4_4g06470
malus_domestica	MD04G1003500.v1.1
prunus_persica	Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1
pyrus_communis	pycom04g00360
rosa_chinensis	RchiOBHm_Chr4g0398261 RchiOBHm_Chr5g0081671 RchiOBHm_Chr5g0082081 RchiOBHm_Chr5g0082701
rosa_laevigata	RLG00000036957 RLG00000036962 RLG00000036979
rosa_multiflora	Rmu_co8467303.1_g000001 Rmu_sc0000303.1_g000009 Rmu_sc0001687.1_g000002 Rmu_sc0002176.1_g000036 Rmu_sc0002723.1_g000006 Rmu_sc0002723.1_g000051 Rmu_sc0002723.1_g000052 Rmu_sc0004094.1_g000006 Rmu_sc0004835.1_g000037 Rmu_sc0012399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343240
rosa_rugosa	Rorug04G0007200 Rorug04G0007300 Rorug05G0477600
rosa_samantha	Rh4AG084700 Rh4BG082100 Rh4CG092100 Rh4DG077200 Rh5AG529100 Rh5BG554300 Rh5BG554800 Rh5BG555700 Rh5CG577200 Rh5CG577700 Rh5CG578400 Rh5DG563900 Rh5DG564100 Rh5DG565000 Rh5DG565100
rosa_wichuraiana	Rw0G022970 Rw4G007040 Rw5G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1079, 1505
Acc36I	ACCTGC	3 cut(s)	697, 1079, 1505
AccB7I	CCANNNNNTGG	1 cut(s)	1233
AccBSI	CCGCTC	1 cut(s)	279
AccI	GTMKAC	2 cut(s)	1184, 1522
AccII	CGCG	1 cut(s)	112
AccIII	TCCGGA	1 cut(s)	943
AciI	CCGC	8 cut(s)	279, 290, 296, 380, 707, 819, 952, 1024
AclWI	GGATC	6 cut(s)	281, 767, 808, 935, 948, 1594
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	2 cut(s)	482, 732
AcvI	CACGTG	1 cut(s)	698
AdeI	CACNNNGTG	2 cut(s)	698, 814
AfaI	GTAC	3 cut(s)	842, 1174, 1280
AfeI	AGCGCT	2 cut(s)	244, 960
AfiI	CCNNNNNNNGG	4 cut(s)	332, 621, 642, 1233
AflIII	ACRYGT	2 cut(s)	110, 1528
AgeI	ACCGGT	1 cut(s)	738
AgsI	TTSAA	6 cut(s)	78, 316, 346, 448, 746, 1545
AjnI	CCWGG	1 cut(s)	729
Alw21I	GWGCWC	2 cut(s)	867, 981
Alw26I	GTCTC	2 cut(s)	141, 300
Alw44I	GTGCAC	1 cut(s)	863
AlwI	GGATC	6 cut(s)	281, 767, 808, 935, 948, 1594
Ama87I	CYCGRG	1 cut(s)	1557
Aor13HI	TCCGGA	1 cut(s)	943
Aor51HI	AGCGCT	2 cut(s)	244, 960
AoxI	GGCC	5 cut(s)	171, 566, 574, 633, 921
ApaLI	GTGCAC	1 cut(s)	863
ApeKI	GCWGC	5 cut(s)	349, 608, 611, 1031, 1396
ApoI	RAATTY	1 cut(s)	320
ArsI	GACNNNNNNTTYG	2 cut(s)	1546, 1578
AsiGI	ACCGGT	1 cut(s)	738
AspLEI	GCGC	2 cut(s)	245, 961
AspS9I	GGNCC	3 cut(s)	575, 686, 1495
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	4 cut(s)	296, 763, 1082, 1103
AsuII	TTCGAA	1 cut(s)	1316
AvaI	CYCGRG	1 cut(s)	1557
AvaII	GGWCC	2 cut(s)	686, 1495
BaeGI	GKGCMC	1 cut(s)	867
BamHI	GGATCC	1 cut(s)	940
BanII	GRGCYC	1 cut(s)	981
BauI	CACGAG	1 cut(s)	40
BbrPI	CACGTG	1 cut(s)	698
BbsI	GAAGAC	2 cut(s)	264, 1467
Bbv12I	GWGCWC	2 cut(s)	867, 981
BbvI	GCAGC	5 cut(s)	361, 595, 623, 1043, 1383
BccI	CCATC	6 cut(s)	132, 362, 665, 1227, 1267, 1351
BceAI	ACGGC	1 cut(s)	571
BcgI	CGANNNNNNTGC	2 cut(s)	1375, 1409
BciT130I	CCWGG	1 cut(s)	731
BciVI	GTATCC	1 cut(s)	1216
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	2 cut(s)	141, 300
BfaI	CTAG	2 cut(s)	398, 797
BfmI	CTRYAG	2 cut(s)	609, 935
BfoI	RGCGCY	2 cut(s)	246, 962
BfuAI	ACCTGC	3 cut(s)	697, 1079, 1505
BfuI	GTATCC	1 cut(s)	1216
BisI	GCNGC	6 cut(s)	350, 609, 612, 708, 1032, 1397
BlsI	GCNGC	6 cut(s)	351, 610, 613, 709, 1033, 1398
BmcAI	AGTACT	1 cut(s)	1280
Bme1390I	CCNGG	2 cut(s)	578, 731
Bme18I	GGWCC	2 cut(s)	686, 1495
BmeT110I	CYCGRG	1 cut(s)	1557
BmgT120I	GGNCC	3 cut(s)	575, 686, 1495
BmiI	GGNNCC	4 cut(s)	47, 520, 942, 1496
BmrFI	CCNGG	2 cut(s)	578, 731
BmrI	ACTGGG	1 cut(s)	1474
BmsI	GCATC	4 cut(s)	595, 1038, 1231, 1313
BmuI	ACTGGG	1 cut(s)	1474
BpiI	GAAGAC	2 cut(s)	264, 1467
BpmI	CTGGAG	1 cut(s)	1602
Bpu10I	CCTNAGC	1 cut(s)	980
Bpu14I	TTCGAA	1 cut(s)	1316
BpuEI	CTTGAG	2 cut(s)	437, 873
BpuMI	CCSGG	1 cut(s)	578
Bsa29I	ATCGAT	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	698
BsaBI	GATNNNNATC	1 cut(s)	1387
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	4 cut(s)	84, 1062, 1481, 1490
BsaWI	WCCGGW	2 cut(s)	738, 943
BsaXI	ACNNNNNCTCC	8 cut(s)	178, 208, 462, 492, 572, 602, 1228, 1258
Bsc4I	CCNNNNNNNGG	4 cut(s)	332, 621, 642, 1233
Bse118I	RCCGGY	1 cut(s)	738
Bse1I	ACTGG	4 cut(s)	848, 1089, 1227, 1469
Bse3DI	GCAATG	3 cut(s)	1026, 1041, 1391
Bse8I	GATNNNNATC	1 cut(s)	1387
BseAI	TCCGGA	1 cut(s)	943
BseBI	CCWGG	1 cut(s)	731
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	4 cut(s)	84, 1062, 1481, 1490
BseGI	GGATG	6 cut(s)	27, 781, 970, 1140, 1238, 1477
BseJI	GATNNNNATC	1 cut(s)	1387
BseLI	CCNNNNNNNGG	4 cut(s)	332, 621, 642, 1233
BseMI	GCAATG	3 cut(s)	1026, 1041, 1391
BseMII	CTCAG	5 cut(s)	416, 439, 549, 642, 994
BseNI	ACTGG	4 cut(s)	848, 1089, 1227, 1469
BseRI	GAGGAG	7 cut(s)	199, 1091, 1337, 1340, 1351, 1427, 1469
BseSI	GKGCMC	1 cut(s)	867
BseXI	GCAGC	5 cut(s)	361, 595, 623, 1043, 1383
BsgI	GTGCAG	1 cut(s)	675
Bsh1236I	CGCG	1 cut(s)	112
Bsh1285I	CGRYCG	1 cut(s)	1385
BshFI	GGCC	5 cut(s)	173, 568, 576, 635, 923
BshTI	ACCGGT	1 cut(s)	738
BshVI	ATCGAT	1 cut(s)	366
BsiEI	CGRYCG	1 cut(s)	1385
BsiHKAI	GWGCWC	2 cut(s)	867, 981
BsiHKCI	CYCGRG	1 cut(s)	1557
BsiSI	CCGG	4 cut(s)	578, 593, 739, 944
BslFI	GGGAC	1 cut(s)	1508
BslI	CCNNNNNNNGG	4 cut(s)	332, 621, 642, 1233
BsmAI	GTCTC	2 cut(s)	141, 300
BsmFI	GGGAC	1 cut(s)	1508
BsnI	GGCC	5 cut(s)	173, 568, 576, 635, 923
Bso31I	GGTCTC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	1557
Bsp119I	TTCGAA	1 cut(s)	1316
Bsp1286I	GDGCHC	2 cut(s)	867, 981
Bsp13I	TCCGGA	1 cut(s)	943
Bsp143I	GATC	8 cut(s)	286, 363, 414, 759, 800, 940, 1382, 1586
Bsp19I	CCATGG	1 cut(s)	1062
BspACI	CCGC	8 cut(s)	279, 290, 296, 380, 707, 819, 952, 1024
BspANI	GGCC	5 cut(s)	173, 568, 576, 635, 923
BspCNI	CTCAG	5 cut(s)	415, 438, 550, 643, 993
BspDI	ATCGAT	1 cut(s)	366
BspEI	TCCGGA	1 cut(s)	943
BspFNI	CGCG	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	4 cut(s)	47, 520, 942, 1496
BspMAI	CTGCAG	1 cut(s)	613
BspMI	ACCTGC	3 cut(s)	697, 1079, 1505
BspPI	GGATC	6 cut(s)	281, 767, 808, 935, 948, 1594
BspT104I	TTCGAA	1 cut(s)	1316
BspTNI	GGTCTC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	279
BsrDI	GCAATG	3 cut(s)	1026, 1041, 1391
BsrFI	RCCGGY	1 cut(s)	738
BsrI	ACTGG	4 cut(s)	848, 1089, 1227, 1469
BssAI	RCCGGY	1 cut(s)	738
BssECI	CCNNGG	4 cut(s)	84, 1062, 1481, 1490
BssMI	GATC	8 cut(s)	286, 363, 414, 759, 800, 940, 1382, 1586
BssSI	CACGAG	1 cut(s)	40
BssT1I	CCWWGG	2 cut(s)	1062, 1490
Bst2BI	CACGAG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	1 cut(s)	1499
Bst6I	CTCTTC	2 cut(s)	741, 1328
BstAPI	GCANNNNNTGC	3 cut(s)	355, 698, 1310
BstBAI	YACGTR	1 cut(s)	698
BstBI	TTCGAA	1 cut(s)	1316
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	6 cut(s)	402, 425, 558, 651, 980, 1269
BstDSI	CCRYGG	2 cut(s)	1062, 1481
BstF5I	GGATG	6 cut(s)	27, 781, 970, 1140, 1238, 1477
BstFNI	CGCG	1 cut(s)	112
BstH2I	RGCGCY	2 cut(s)	246, 962
BstHHI	GCGC	2 cut(s)	245, 961
BstKTI	GATC	8 cut(s)	289, 366, 417, 762, 803, 943, 1385, 1589
BstMAI	GTCTC	2 cut(s)	141, 300
BstMBI	GATC	8 cut(s)	286, 363, 414, 759, 800, 940, 1382, 1586
BstMCI	CGRYCG	1 cut(s)	1385
BstNI	CCWGG	1 cut(s)	731
BstSCI	CCNGG	2 cut(s)	576, 729
BstSFI	CTRYAG	2 cut(s)	609, 935
BstSLI	GKGCMC	1 cut(s)	867
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	5 cut(s)	361, 595, 623, 1043, 1383
BstV2I	GAAGAC	2 cut(s)	264, 1467
BstX2I	RGATCY	1 cut(s)	940
BstYI	RGATCY	1 cut(s)	940
Bsu15I	ATCGAT	1 cut(s)	366
BsuI	GTATCC	1 cut(s)	1216
BsuRI	GGCC	5 cut(s)	173, 568, 576, 635, 923
BsuTUI	ATCGAT	1 cut(s)	366
BtgI	CCRYGG	2 cut(s)	1062, 1481
BtsCI	GGATG	6 cut(s)	27, 781, 970, 1140, 1238, 1477
BtsIMutI	CAGTG	1 cut(s)	1234
BveI	ACCTGC	3 cut(s)	697, 1079, 1505
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	127
CfoI	GCGC	2 cut(s)	245, 961
Cfr10I	RCCGGY	1 cut(s)	738
Cfr13I	GGNCC	3 cut(s)	575, 686, 1495
ClaI	ATCGAT	1 cut(s)	366
CseI	GACGC	2 cut(s)	101, 118
Csp6I	GTAC	3 cut(s)	841, 1173, 1279
CspAI	ACCGGT	1 cut(s)	738
CviAII	CATG	4 cut(s)	128, 523, 1063, 1552
CviQI	GTAC	3 cut(s)	841, 1173, 1279
DdeI	CTNAG	6 cut(s)	402, 425, 558, 651, 980, 1269
DpnI	GATC	8 cut(s)	288, 365, 416, 761, 802, 942, 1384, 1588
DpnII	GATC	8 cut(s)	286, 363, 414, 759, 800, 940, 1382, 1586
DraI	TTTAAA	1 cut(s)	928
DraIII	CACNNNGTG	2 cut(s)	698, 814
Eam1104I	CTCTTC	2 cut(s)	741, 1328
EarI	CTCTTC	2 cut(s)	741, 1328
Ecl136II	GAGCTC	1 cut(s)	979
Eco130I	CCWWGG	2 cut(s)	1062, 1490
Eco147I	AGGCCT	1 cut(s)	923
Eco24I	GRGCYC	1 cut(s)	981
Eco31I	GGTCTC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	686, 1495
Eco47III	AGCGCT	2 cut(s)	244, 960
Eco53kI	GAGCTC	1 cut(s)	979
Eco57I	CTGAAG	2 cut(s)	482, 732
Eco72I	CACGTG	1 cut(s)	698
Eco88I	CYCGRG	1 cut(s)	1557
EcoICRI	GAGCTC	1 cut(s)	979
EcoRII	CCWGG	1 cut(s)	729
EcoT14I	CCWWGG	2 cut(s)	1062, 1490
EcoT38I	GRGCYC	1 cut(s)	981
ErhI	CCWWGG	2 cut(s)	1062, 1490
FaeI	CATG	4 cut(s)	131, 526, 1066, 1555
FaqI	GGGAC	1 cut(s)	1508
FatI	CATG	4 cut(s)	127, 522, 1062, 1551
FauI	CCCGC	1 cut(s)	1017
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	2 cut(s)	1184, 1522
Fnu4HI	GCNGC	6 cut(s)	350, 609, 612, 708, 1032, 1397
FokI	GGATG	6 cut(s)	34, 788, 977, 1147, 1245, 1464
FriOI	GRGCYC	1 cut(s)	981
Fsp4HI	GCNGC	6 cut(s)	350, 609, 612, 708, 1032, 1397
FspBI	CTAG	2 cut(s)	398, 797
GlaI	GCGC	2 cut(s)	244, 960
GluI	GCNGC	6 cut(s)	350, 609, 612, 708, 1032, 1397
GsuI	CTGGAG	1 cut(s)	1602
HaeII	RGCGCY	2 cut(s)	246, 962
HaeIII	GGCC	5 cut(s)	173, 568, 576, 635, 923
HapII	CCGG	4 cut(s)	578, 593, 739, 944
HgaI	GACGC	2 cut(s)	101, 118
HhaI	GCGC	2 cut(s)	245, 961
Hin1II	CATG	4 cut(s)	131, 526, 1066, 1555
Hin6I	GCGC	2 cut(s)	243, 959
HinP1I	GCGC	2 cut(s)	243, 959
HincII	GTYRAC	2 cut(s)	385, 1185
HindII	GTYRAC	2 cut(s)	385, 1185
HinfI	GANTC	8 cut(s)	89, 263, 430, 448, 719, 999, 1541, 1555
HpaII	CCGG	4 cut(s)	578, 593, 739, 944
HphI	GGTGA	4 cut(s)	296, 763, 1082, 1103
Hpy166II	GTNNAC	4 cut(s)	385, 865, 1185, 1523
Hpy188I	TCNGA	4 cut(s)	85, 405, 414, 1252
Hpy188III	TCNNGA	6 cut(s)	128, 427, 557, 832, 944, 1581
Hpy8I	GTNNAC	4 cut(s)	385, 865, 1185, 1523
Hpy99I	CGWCG	1 cut(s)	592
HpyAV	CCTTC	5 cut(s)	84, 310, 543, 558, 1257
HpyCH4III	ACNGT	1 cut(s)	1499
HpyCH4IV	ACGT	2 cut(s)	697, 1528
HpyCH4V	TGCA	7 cut(s)	358, 611, 692, 865, 1051, 1304, 1399
HpyF3I	CTNAG	6 cut(s)	402, 425, 558, 651, 980, 1269
HpySE526I	ACGT	2 cut(s)	697, 1528
Hsp92II	CATG	4 cut(s)	131, 526, 1066, 1555
HspAI	GCGC	2 cut(s)	243, 959
Kpn2I	TCCGGA	1 cut(s)	943
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	8 cut(s)	286, 363, 414, 759, 800, 940, 1382, 1586
LmnI	GCTCC	4 cut(s)	86, 186, 1078, 1249
Lsp1109I	GCAGC	5 cut(s)	361, 595, 623, 1043, 1383
LweI	GCATC	4 cut(s)	595, 1038, 1231, 1313
MaeI	CTAG	2 cut(s)	398, 797
MaeII	ACGT	2 cut(s)	697, 1528
MaeIII	GTNAC	2 cut(s)	751, 852
MalI	GATC	8 cut(s)	288, 365, 416, 761, 802, 942, 1384, 1588
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	8 cut(s)	286, 363, 414, 759, 800, 940, 1382, 1586
MboII	GAAGA	7 cut(s)	244, 264, 671, 758, 982, 1345, 1472
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	940
MhlI	GDGCHC	2 cut(s)	867, 981
MluCI	AATT	5 cut(s)	320, 570, 617, 1363, 1535
MluI	ACGCGT	1 cut(s)	110
MlyI	GAGTC	2 cut(s)	424, 1549
MmeI	TCCRAC	2 cut(s)	524, 636
MroI	TCCGGA	1 cut(s)	943
MseI	TTAA	3 cut(s)	641, 927, 1107
MslI	CAYNNNNRTG	2 cut(s)	126, 129
MspA1I	CMGCKG	1 cut(s)	821
MspI	CCGG	4 cut(s)	578, 593, 739, 944
MspR9I	CCNGG	2 cut(s)	578, 731
MunI	CAATTG	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	731
MvnI	CGCG	1 cut(s)	112
NciI	CCSGG	1 cut(s)	578
NcoI	CCATGG	1 cut(s)	1062
NdeII	GATC	8 cut(s)	286, 363, 414, 759, 800, 940, 1382, 1586
NlaIII	CATG	4 cut(s)	131, 526, 1066, 1555
NlaIV	GGNNCC	4 cut(s)	47, 520, 942, 1496
NmeAIII	GCCGAG	2 cut(s)	199, 661
NmuCI	GTSAC	2 cut(s)	751, 852
NspV	TTCGAA	1 cut(s)	1316
PaeR7I	CTCGAG	1 cut(s)	1557
PagI	TCATGA	1 cut(s)	127
PaqCI	CACCTGC	2 cut(s)	1079, 1505
PceI	AGGCCT	1 cut(s)	923
PfeI	GAWTC	6 cut(s)	89, 263, 448, 719, 999, 1541
PflMI	CCANNNNNTGG	1 cut(s)	1233
PinAI	ACCGGT	1 cut(s)	738
PkrI	GCNGC	6 cut(s)	351, 610, 613, 709, 1033, 1398
Ple19I	CGATCG	1 cut(s)	1385
PleI	GAGTC	2 cut(s)	424, 1549
PmaCI	CACGTG	1 cut(s)	698
PmlI	CACGTG	1 cut(s)	698
PpsI	GAGTC	2 cut(s)	424, 1549
Ppu21I	YACGTR	1 cut(s)	698
Psp124BI	GAGCTC	1 cut(s)	981
Psp6I	CCWGG	1 cut(s)	729
PspCI	CACGTG	1 cut(s)	698
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	4 cut(s)	47, 520, 942, 1496
PspPI	GGNCC	3 cut(s)	575, 686, 1495
PspXI	VCTCGAGB	1 cut(s)	1557
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	1 cut(s)	940
PvuI	CGATCG	1 cut(s)	1385
RsaI	GTAC	3 cut(s)	842, 1174, 1280
RsaNI	GTAC	3 cut(s)	841, 1173, 1279
RseI	CAYNNNNRTG	2 cut(s)	126, 129
SacI	GAGCTC	1 cut(s)	981
SalI	GTCGAC	1 cut(s)	1183
SaqAI	TTAA	3 cut(s)	641, 927, 1107
SatI	GCNGC	6 cut(s)	350, 609, 612, 708, 1032, 1397
Sau3AI	GATC	8 cut(s)	286, 363, 414, 759, 800, 940, 1382, 1586
Sau96I	GGNCC	3 cut(s)	575, 686, 1495
ScaI	AGTACT	1 cut(s)	1280
SchI	GAGTC	2 cut(s)	424, 1549
ScrFI	CCNGG	2 cut(s)	578, 731
SduI	GDGCHC	2 cut(s)	867, 981
SfaNI	GCATC	4 cut(s)	595, 1038, 1231, 1313
SfcI	CTRYAG	2 cut(s)	609, 935
Sfr274I	CTCGAG	1 cut(s)	1557
SfuI	TTCGAA	1 cut(s)	1316
SinI	GGWCC	2 cut(s)	686, 1495
SlaI	CTCGAG	1 cut(s)	1557
SmiMI	CAYNNNNRTG	2 cut(s)	126, 129
SmlI	CTYRAG	3 cut(s)	452, 888, 1557
SmoI	CTYRAG	3 cut(s)	452, 888, 1557
Sse9I	AATT	5 cut(s)	320, 570, 617, 1363, 1535
SseBI	AGGCCT	1 cut(s)	923
SsiI	CCGC	8 cut(s)	279, 290, 296, 380, 707, 819, 952, 1024
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	2 cut(s)	398, 797
SstI	GAGCTC	1 cut(s)	981
StuI	AGGCCT	1 cut(s)	923
StyD4I	CCNGG	2 cut(s)	576, 729
StyI	CCWWGG	2 cut(s)	1062, 1490
TaaI	ACNGT	1 cut(s)	1499
TaiI	ACGT	2 cut(s)	700, 1531
TaqI	TCGA	7 cut(s)	215, 275, 366, 1184, 1316, 1385, 1558
TasI	AATT	5 cut(s)	320, 570, 617, 1363, 1535
TatI	WGTACW	2 cut(s)	1172, 1278
TauI	GCSGC	1 cut(s)	710
TfiI	GAWTC	6 cut(s)	89, 263, 448, 719, 999, 1541
Tru1I	TTAA	3 cut(s)	641, 927, 1107
Tru9I	TTAA	3 cut(s)	641, 927, 1107
TscAI	CASTG	1 cut(s)	1234
TseFI	GTSAC	2 cut(s)	751, 852
TseI	GCWGC	5 cut(s)	349, 608, 611, 1031, 1396
Tsp45I	GTSAC	2 cut(s)	751, 852
TspDTI	ATGAA	4 cut(s)	38, 51, 224, 991
TspGWI	ACGGA	4 cut(s)	47, 483, 779, 1470
TspRI	CASTG	1 cut(s)	1234
Van91I	CCANNNNNTGG	1 cut(s)	1233
VneI	GTGCAC	1 cut(s)	863
VpaK11BI	GGWCC	2 cut(s)	686, 1495
XapI	RAATTY	1 cut(s)	320
XhoI	CTCGAG	1 cut(s)	1557
XmiI	GTMKAC	2 cut(s)	1184, 1522
XspI	CTAG	2 cut(s)	398, 797
ZrmI	AGTACT	1 cut(s)	1280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.