RchiOBHm_Chr5g0082701

Protein of unknown function (DUF3752)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001274
Physical Location & Seq
Forward (+)
88598305 .. 88601585
3281 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35689

Sequence Viewer

Length: 1182 bp
ATGAAACATCTAGACTACACGAGTAACCATTCTGTCCGTTCATCAATATCCTCTCCTTCAAGCTCCGACGATTCTAAATGCTTTTCCAAGACGCGTCATCTCCACCGTCCTGATGACACTTCCAAAAGAGACAAACAGAGGCAAAGGGAGAAGGCCAAGAAACAGAGGAGCAAAAGTGAGGCAAAGAGAATGAAATCGAAAGACAGCGATAAGAAGAAGCAGAGAGCTTATGAGATTGATGATGATTCTGGGTCTTCGAGCGGTGGTGATCCGCAAGCGGTTCTGCGAGACTTGTTGAAGGAATTTCCTAATATTGGGTGCGATTTGAAGCAGCTTTTGCAAGTGATCGATGGGGGCAAAGCGGTTGACATAAATGGACTAGCTCAGAAACCTCTGATCAAGCCTCTCAGGACTCTGTTCCTTTCCTTGAATCTCAGGACTAGCTCAGAAACCTCTGATCAAGCCAACCAAGCAGTTGTGAAGCTGAACAAGGCCTTTAAAGAGCTACAGGATCCGGAGAAGCGGAGAGCGCTGGATGAGAAGATTGAGCTCAGGGAGATGCAGGAGAGATTCATTGTTGAGTTGAGGGCAATGCGGGAAGCAGCAATGTGGAGAAAGATGCAGGGGATTTCCATGGAGGGTGATGAGGAGCTACTGGCAGGTGATGTGAGTGGTGTTAAAGCGGCACGAAAAAGAGATGAGAAAATGACAGAGCTTCCTCCAGAGAGGAAACATGGTATGAGTACAAGGCAGTCGACAATGTTTAGCAGGAGTGCTAAACAAGGGCGAGGGGATACCAGTGGATGGACTGATGCTCCTTCTGAAAGAGCTTGGAAAGCTAAGATGGAGTACTTACAAGCCTATAATGAGTTTGCATCACTTGCTTCGAATGAGGAGGAGAGGAAGAGGAGTTTAGTGGCAGAGTTGATGGACAATTACAAGAAAGATAAACGATCGAAATCATTGCTGCAAAAGCACCAAGAGGAGATTAGAGCAAAGAGAAAATACTCCAAGCAACAGGCAGAGGAGGAAGACTGGGTGGGGAAACATCCGTGGAAGCCTTGGGACCGTGAGAAAGATTTGGCAGGTGGTAGACAACGTGTGAAATTGGATTCAAAAAACATGACTCGAGGTTTGTCATCTCGGTTTTCTGGAGGATCATACCAGAGGAACTTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3752 DnaJ

Protein Analysis

393

Amino Acids

45.23

Weight (kDa)

9.74

Isoelectric Point (pI)

57.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3752 PF12572 240 - 384 4.5e-23 Protein of unknown function (DUF3752)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 650, 1076
Acc36I ACCTGC 2 cut(s) 650, 1076
AccB7I CCANNNNNTGG 1 cut(s) 804
AccBSI CCGCTC 1 cut(s) 261
AccI GTMKAC 2 cut(s) 755, 1093
AccII CGCG 1 cut(s) 94
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 7 cut(s) 261, 272, 278, 362, 523, 595, 683
AclWI GGATC 4 cut(s) 263, 506, 519, 1165
AcsI RAATTY 1 cut(s) 302
AfaI GTAC 2 cut(s) 745, 851
AfeI AGCGCT 1 cut(s) 531
AfiI CCNNNNNNNGG 2 cut(s) 314, 804
AflIII ACRYGT 2 cut(s) 92, 1099
AgsI TTSAA 5 cut(s) 60, 298, 328, 430, 1116
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 2 cut(s) 123, 282
AlwI GGATC 4 cut(s) 263, 506, 519, 1165
Ama87I CYCGRG 1 cut(s) 1128
Aor13HI TCCGGA 1 cut(s) 514
Aor51HI AGCGCT 1 cut(s) 531
AoxI GGCC 2 cut(s) 153, 492
ApeKI GCWGC 3 cut(s) 331, 602, 967
ApoI RAATTY 1 cut(s) 302
ArsI GACNNNNNNTTYG 2 cut(s) 1117, 1149
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 1 cut(s) 1066
AsuHPI GGTGA 3 cut(s) 278, 653, 674
AsuII TTCGAA 1 cut(s) 887
AvaI CYCGRG 1 cut(s) 1128
AvaII GGWCC 1 cut(s) 1066
BamHI GGATCC 1 cut(s) 511
BanII GRGCYC 1 cut(s) 552
BauI CACGAG 1 cut(s) 19
BbsI GAAGAC 2 cut(s) 246, 1038
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 3 cut(s) 343, 614, 954
BccI CCATC 4 cut(s) 344, 798, 838, 922
BcgI CGANNNNNNTGC 2 cut(s) 946, 980
BciVI GTATCC 1 cut(s) 787
BclI TGATCA 2 cut(s) 396, 457
BcoDI GTCTC 2 cut(s) 123, 282
BfaI CTAG 3 cut(s) 11, 380, 441
BfmI CTRYAG 1 cut(s) 506
BfoI RGCGCY 1 cut(s) 533
BfuAI ACCTGC 2 cut(s) 650, 1076
BfuI GTATCC 1 cut(s) 787
BisI GCNGC 4 cut(s) 332, 603, 684, 968
BlsI GCNGC 4 cut(s) 333, 604, 685, 969
BmcAI AGTACT 1 cut(s) 851
Bme18I GGWCC 1 cut(s) 1066
BmeT110I CYCGRG 1 cut(s) 1128
BmgT120I GGNCC 1 cut(s) 1066
BmiI GGNNCC 2 cut(s) 513, 1067
BmrI ACTGGG 1 cut(s) 1045
BmsI GCATC 4 cut(s) 549, 609, 802, 884
BmuI ACTGGG 1 cut(s) 1045
BpiI GAAGAC 2 cut(s) 246, 1038
BpmI CTGGAG 2 cut(s) 705, 1173
Bpu10I CCTNAGC 1 cut(s) 551
Bpu14I TTCGAA 1 cut(s) 887
Bsa29I ATCGAT 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 958
BsaJI CCNNGG 3 cut(s) 633, 1052, 1061
BsaWI WCCGGW 1 cut(s) 514
BsaXI ACNNNNNCTCC 4 cut(s) 160, 190, 799, 829
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 804
Bse1I ACTGG 3 cut(s) 660, 798, 1040
Bse3DI GCAATG 3 cut(s) 597, 612, 962
Bse8I GATNNNNATC 1 cut(s) 958
BseAI TCCGGA 1 cut(s) 514
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 633, 1052, 1061
BseGI GGATG 3 cut(s) 541, 809, 1048
BseJI GATNNNNATC 1 cut(s) 958
BseLI CCNNNNNNNGG 2 cut(s) 314, 804
BseMI GCAATG 3 cut(s) 597, 612, 962
BseMII CTCAG 5 cut(s) 398, 421, 448, 459, 565
BseNI ACTGG 3 cut(s) 660, 798, 1040
BseRI GAGGAG 7 cut(s) 181, 662, 908, 911, 922, 998, 1040
BseXI GCAGC 3 cut(s) 343, 614, 954
Bsh1236I CGCG 1 cut(s) 94
Bsh1285I CGRYCG 1 cut(s) 956
BshFI GGCC 2 cut(s) 155, 494
BshVI ATCGAT 1 cut(s) 348
BsiEI CGRYCG 1 cut(s) 956
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 1128
BsiSI CCGG 1 cut(s) 515
BslFI GGGAC 1 cut(s) 1079
BslI CCNNNNNNNGG 2 cut(s) 314, 804
BsmAI GTCTC 2 cut(s) 123, 282
BsmFI GGGAC 1 cut(s) 1079
BsnI GGCC 2 cut(s) 155, 494
BsoBI CYCGRG 1 cut(s) 1128
Bsp119I TTCGAA 1 cut(s) 887
Bsp1286I GDGCHC 1 cut(s) 552
Bsp13I TCCGGA 1 cut(s) 514
Bsp143I GATC 7 cut(s) 268, 345, 396, 457, 511, 953, 1157
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 7 cut(s) 261, 272, 278, 362, 523, 595, 683
BspANI GGCC 2 cut(s) 155, 494
BspCNI CTCAG 5 cut(s) 397, 420, 447, 458, 564
BspDI ATCGAT 1 cut(s) 348
BspEI TCCGGA 1 cut(s) 514
BspFNI CGCG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 513, 1067
BspMI ACCTGC 2 cut(s) 650, 1076
BspPI GGATC 4 cut(s) 263, 506, 519, 1165
BspT104I TTCGAA 1 cut(s) 887
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 3 cut(s) 597, 612, 962
BsrI ACTGG 3 cut(s) 660, 798, 1040
BssECI CCNNGG 3 cut(s) 633, 1052, 1061
BssMI GATC 7 cut(s) 268, 345, 396, 457, 511, 953, 1157
BssSI CACGAG 1 cut(s) 19
BssT1I CCWWGG 2 cut(s) 633, 1061
Bst2BI CACGAG 1 cut(s) 19
Bst4CI ACNGT 2 cut(s) 107, 1070
Bst6I CTCTTC 1 cut(s) 899
BstAPI GCANNNNNTGC 2 cut(s) 337, 881
BstBI TTCGAA 1 cut(s) 887
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 6 cut(s) 384, 407, 434, 445, 551, 840
BstDSI CCRYGG 2 cut(s) 633, 1052
BstF5I GGATG 3 cut(s) 541, 809, 1048
BstFNI CGCG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 533
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 7 cut(s) 271, 348, 399, 460, 514, 956, 1160
BstMAI GTCTC 2 cut(s) 123, 282
BstMBI GATC 7 cut(s) 268, 345, 396, 457, 511, 953, 1157
BstMCI CGRYCG 1 cut(s) 956
BstMWI GCNNNNNNNGC 6 cut(s) 337, 470, 529, 836, 881, 973
BstSFI CTRYAG 1 cut(s) 506
BstUI CGCG 1 cut(s) 94
BstV1I GCAGC 3 cut(s) 343, 614, 954
BstV2I GAAGAC 2 cut(s) 246, 1038
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
Bsu15I ATCGAT 1 cut(s) 348
BsuI GTATCC 1 cut(s) 787
BsuRI GGCC 2 cut(s) 155, 494
BsuTUI ATCGAT 1 cut(s) 348
BtgI CCRYGG 2 cut(s) 633, 1052
BtsCI GGATG 3 cut(s) 541, 809, 1048
BtsIMutI CAGTG 1 cut(s) 805
BveI ACCTGC 2 cut(s) 650, 1076
Cac8I GCNNGC 1 cut(s) 276
CfoI GCGC 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 1066
ClaI ATCGAT 1 cut(s) 348
CseI GACGC 2 cut(s) 83, 100
Csp6I GTAC 2 cut(s) 744, 850
CviAII CATG 3 cut(s) 634, 734, 1123
CviQI GTAC 2 cut(s) 744, 850
DdeI CTNAG 6 cut(s) 384, 407, 434, 445, 551, 840
DpnI GATC 7 cut(s) 270, 347, 398, 459, 513, 955, 1159
DpnII GATC 7 cut(s) 268, 345, 396, 457, 511, 953, 1157
DraI TTTAAA 1 cut(s) 499
Eam1104I CTCTTC 1 cut(s) 899
EarI CTCTTC 1 cut(s) 899
Ecl136II GAGCTC 1 cut(s) 550
Eco130I CCWWGG 2 cut(s) 633, 1061
Eco147I AGGCCT 1 cut(s) 494
Eco24I GRGCYC 1 cut(s) 552
Eco47I GGWCC 1 cut(s) 1066
Eco47III AGCGCT 1 cut(s) 531
Eco53kI GAGCTC 1 cut(s) 550
Eco88I CYCGRG 1 cut(s) 1128
EcoICRI GAGCTC 1 cut(s) 550
EcoT14I CCWWGG 2 cut(s) 633, 1061
EcoT38I GRGCYC 1 cut(s) 552
ErhI CCWWGG 2 cut(s) 633, 1061
FaeI CATG 3 cut(s) 637, 737, 1126
FaiI YATR 8 cut(s) 231, 371, 635, 735, 740, 864, 1124, 1162
FaqI GGGAC 1 cut(s) 1079
FatI CATG 3 cut(s) 633, 733, 1122
FauI CCCGC 1 cut(s) 588
FbaI TGATCA 2 cut(s) 396, 457
FblI GTMKAC 2 cut(s) 755, 1093
Fnu4HI GCNGC 4 cut(s) 332, 603, 684, 968
FokI GGATG 3 cut(s) 548, 816, 1035
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 4 cut(s) 332, 603, 684, 968
FspBI CTAG 3 cut(s) 11, 380, 441
GlaI GCGC 1 cut(s) 531
GluI GCNGC 4 cut(s) 332, 603, 684, 968
GsuI CTGGAG 2 cut(s) 705, 1173
HaeII RGCGCY 1 cut(s) 533
HaeIII GGCC 2 cut(s) 155, 494
HapII CCGG 1 cut(s) 515
HgaI GACGC 2 cut(s) 83, 100
HhaI GCGC 1 cut(s) 532
Hin1II CATG 3 cut(s) 637, 737, 1126
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HincII GTYRAC 2 cut(s) 367, 756
HindII GTYRAC 2 cut(s) 367, 756
HinfI GANTC 7 cut(s) 71, 245, 412, 430, 570, 1112, 1126
HpaII CCGG 1 cut(s) 515
HphI GGTGA 3 cut(s) 278, 653, 674
Hpy166II GTNNAC 3 cut(s) 367, 756, 1094
Hpy188I TCNGA 6 cut(s) 67, 387, 396, 448, 457, 823
Hpy188III TCNNGA 7 cut(s) 11, 110, 409, 436, 515, 722, 1152
Hpy8I GTNNAC 3 cut(s) 367, 756, 1094
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 4 cut(s) 66, 145, 292, 828
HpyCH4III ACNGT 2 cut(s) 107, 1070
HpyCH4IV ACGT 1 cut(s) 1099
HpyCH4V TGCA 5 cut(s) 340, 562, 622, 875, 970
HpyF10VI GCNNNNNNNGC 6 cut(s) 337, 470, 529, 836, 881, 973
HpyF3I CTNAG 6 cut(s) 384, 407, 434, 445, 551, 840
HpySE526I ACGT 1 cut(s) 1099
Hsp92II CATG 3 cut(s) 637, 737, 1126
HspAI GCGC 1 cut(s) 530
Kpn2I TCCGGA 1 cut(s) 514
Ksp22I TGATCA 2 cut(s) 396, 457
Kzo9I GATC 7 cut(s) 268, 345, 396, 457, 511, 953, 1157
LmnI GCTCC 4 cut(s) 68, 168, 649, 820
Lsp1109I GCAGC 3 cut(s) 343, 614, 954
LweI GCATC 4 cut(s) 549, 609, 802, 884
MaeI CTAG 3 cut(s) 11, 380, 441
MaeII ACGT 1 cut(s) 1099
MaeIII GTNAC 1 cut(s) 23
MalI GATC 7 cut(s) 270, 347, 398, 459, 513, 955, 1159
MbiI CCGCTC 1 cut(s) 261
MboI GATC 7 cut(s) 268, 345, 396, 457, 511, 953, 1157
MboII GAAGA 5 cut(s) 226, 246, 553, 916, 1043
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 1 cut(s) 552
MluCI AATT 3 cut(s) 302, 934, 1106
MluI ACGCGT 1 cut(s) 92
MlyI GAGTC 2 cut(s) 406, 1120
MmeI TCCRAC 1 cut(s) 90
MroI TCCGGA 1 cut(s) 514
MseI TTAA 2 cut(s) 498, 678
MspI CCGG 1 cut(s) 515
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 6 cut(s) 337, 470, 529, 836, 881, 973
NcoI CCATGG 1 cut(s) 633
NdeII GATC 7 cut(s) 268, 345, 396, 457, 511, 953, 1157
NlaIII CATG 3 cut(s) 637, 737, 1126
NlaIV GGNNCC 2 cut(s) 513, 1067
NspV TTCGAA 1 cut(s) 887
PaeR7I CTCGAG 1 cut(s) 1128
PaqCI CACCTGC 2 cut(s) 650, 1076
PceI AGGCCT 1 cut(s) 494
PfeI GAWTC 5 cut(s) 71, 245, 430, 570, 1112
PflMI CCANNNNNTGG 1 cut(s) 804
PkrI GCNGC 4 cut(s) 333, 604, 685, 969
Ple19I CGATCG 1 cut(s) 956
PleI GAGTC 2 cut(s) 406, 1120
PpsI GAGTC 2 cut(s) 406, 1120
Psp124BI GAGCTC 1 cut(s) 552
PspN4I GGNNCC 2 cut(s) 513, 1067
PspPI GGNCC 1 cut(s) 1066
PspXI VCTCGAGB 1 cut(s) 1128
PsuI RGATCY 1 cut(s) 511
PvuI CGATCG 1 cut(s) 956
RsaI GTAC 2 cut(s) 745, 851
RsaNI GTAC 2 cut(s) 744, 850
SacI GAGCTC 1 cut(s) 552
SalI GTCGAC 1 cut(s) 754
SaqAI TTAA 2 cut(s) 498, 678
SatI GCNGC 4 cut(s) 332, 603, 684, 968
Sau3AI GATC 7 cut(s) 268, 345, 396, 457, 511, 953, 1157
Sau96I GGNCC 1 cut(s) 1066
ScaI AGTACT 1 cut(s) 851
SchI GAGTC 2 cut(s) 406, 1120
SduI GDGCHC 1 cut(s) 552
SfaNI GCATC 4 cut(s) 549, 609, 802, 884
SfcI CTRYAG 1 cut(s) 506
Sfr274I CTCGAG 1 cut(s) 1128
SfuI TTCGAA 1 cut(s) 887
SinI GGWCC 1 cut(s) 1066
SlaI CTCGAG 1 cut(s) 1128
SmlI CTYRAG 1 cut(s) 1128
SmoI CTYRAG 1 cut(s) 1128
Sse9I AATT 3 cut(s) 302, 934, 1106
SseBI AGGCCT 1 cut(s) 494
SsiI CCGC 7 cut(s) 261, 272, 278, 362, 523, 595, 683
SspI AATATT 1 cut(s) 313
SspMI CTAG 3 cut(s) 11, 380, 441
SstI GAGCTC 1 cut(s) 552
StuI AGGCCT 1 cut(s) 494
StyI CCWWGG 2 cut(s) 633, 1061
TaaI ACNGT 2 cut(s) 107, 1070
TaiI ACGT 1 cut(s) 1102
TaqI TCGA 7 cut(s) 197, 257, 348, 755, 887, 956, 1129
TasI AATT 3 cut(s) 302, 934, 1106
TatI WGTACW 2 cut(s) 743, 849
TauI GCSGC 1 cut(s) 686
TfiI GAWTC 5 cut(s) 71, 245, 430, 570, 1112
Tru1I TTAA 2 cut(s) 498, 678
Tru9I TTAA 2 cut(s) 498, 678
TscAI CASTG 1 cut(s) 805
TseI GCWGC 3 cut(s) 331, 602, 967
TspDTI ATGAA 4 cut(s) 17, 30, 206, 562
TspGWI ACGGA 2 cut(s) 26, 1041
TspRI CASTG 1 cut(s) 805
Van91I CCANNNNNTGG 1 cut(s) 804
VpaK11BI GGWCC 1 cut(s) 1066
XapI RAATTY 1 cut(s) 302
XbaI TCTAGA 1 cut(s) 10
XhoI CTCGAG 1 cut(s) 1128
XmiI GTMKAC 2 cut(s) 755, 1093
XspI CTAG 3 cut(s) 11, 380, 441
ZrmI AGTACT 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.