FvH4_3g44892

Protein of unknown function (DUF3752)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001274
Physical Location & Seq
Forward (+)
37381646 .. 37388367
6722 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44892.t3

Sequence Viewer

Length: 1425 bp
ATGGAGGGGGCGGGAGAAGAGCGAGCTCAGAGAGAGACGAAACAGAGACTAAACAGAATGAAACCGAAAGACAACGATAGGAAGAAGAAAAAGAGAGATCATGAGATTGATGATGATTCTGATTCTGTTTCTGGTGGTGATCCGCAAGCGGTTGTGCGAGACTTGCTGAAGGAGGTTCCGAATATCGGGTGCGATTTGAAGCAGCTTCTGCAATTGATCGATGGCGGCAAAGCGGTGGACATAACCGGAATATCTCAGAAATCTTTGATCAAGCCTCTCAGAGCTCTGTTTCTTTGCTTGAATCTTAAGGAACTAGATCACGGATCTTTTGTGTTGCCTCCACATGTTCCTCCAACTTTGGAGGTTATTGGGTCCATGATCACGCCTTGTTTAGATGATGAAGATGATGATCATGGTCCTCCTCCTCCTCCTGAGAGAAGGCCAATTGGGCCGGAGATGCCGACGCCGGAGCTACTTGCTGCTGTAGCCAAATTGAGAGAGGCAGAGGCCGAGTTGAGGGAAGCTGAGTTGGAAGAAAAAGGTAATCGGGTTTTTATAGGACCTGCACCACGTGTTGTGGCTGCTGAAGGTGAATCAGCTAGCCAGAGTGATCGTTTCGAAGAGGTGACAAGGATCATGGAAGCAGAGGATGATAACCTGTATGACATATTGGGAGCAAACCACAATGTGTCTGCTGATAACATCAAGAAAAGGTACTGGAAGTTGTCGCTTTTGGTGCATCCTGATAAATGCTCACACCCTCAAGCTAGCCAAGCATTTGTGAAGCTGAACAAGGCGTTTAAGGAGTTACAGGATCCGGAGAAGCGGAGAGCGCTGGATGAGAAGATTGAGCTCAAAGAGAAGCAGGAGAGATTCAAAAAGAGAAACATGGCAGGTGATGTGAGTGTTGTTAAATCGGCACGAAGAAGAGATGAGTGGATGACAGAGCTCCCACCGGAGAGGAAACATGGTATGAGTACAATGCAATCGACAATGTTTAGCAGCAATGCTAAAGAAGGGCGTGGAGATACTGGTTGTTGGACTGATGCTCCATCTGAAAGAGCTCGGAAGGCTAAGATGGATTACTTAAAAGCCTATAATGAGTTTTCATCGCTTGCTTCGAATGAGGAGGAGAGGAAGAGGAGTTTAGATGCAGAGTTGATGGACAGATGTAATAAAGAGAAACGATCGAAGTCATTGTTACAAAAGCACAAAGAGGAGATTAGAGCGAGCCGTTTGAAGAGGAAGCACTCCAAGCAACAGGTAGAGGAGGAAGACTGGGTGGGGAAACATCCGTGGAAGCCTTGGGACCGTGAGAAGGATTTGGCAGGTGGTAGACAAAGTGTGAAACTGGATTCAGAAGACATGACTCGAGGTTTGTCATCAAGGTTTTCTGGAGGATCATATCAAAGGAGCTTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3752 DnaJ

Protein Analysis

475

Amino Acids

53.96

Weight (kDa)

7.18

Isoelectric Point (pI)

56.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 219 - 280 1.9e-18 DnaJ domain
DUF3752 PF12572 318 - 465 1.6e-22 Protein of unknown function (DUF3752)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 884, 1319
Acc36I ACCTGC 3 cut(s) 571, 884, 1319
AccI GTMKAC 1 cut(s) 1336
AccIII TCCGGA 1 cut(s) 817
AciI CCGC 6 cut(s) 11, 143, 149, 225, 233, 826
AclWI GGATC 6 cut(s) 134, 331, 641, 809, 822, 1408
AcuI CTGAAG 2 cut(s) 188, 606
AcvI CACGTG 1 cut(s) 572
AcyI GRCGYC 1 cut(s) 464
AdeI CACNNNGTG 2 cut(s) 572, 688
AfaI GTAC 2 cut(s) 716, 979
AfeI AGCGCT 1 cut(s) 834
AfiI CCNNNNNNNGG 3 cut(s) 185, 516, 1318
AflII CTTAAG 1 cut(s) 305
AflIII ACRYGT 2 cut(s) 343, 571
AgsI TTSAA 4 cut(s) 199, 301, 877, 1240
Alw21I GWGCWC 5 cut(s) 28, 286, 855, 951, 1066
Alw26I GTCTC 3 cut(s) 29, 40, 153
AlwI GGATC 6 cut(s) 134, 331, 641, 809, 822, 1408
AlwNI CAGNNNCTG 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 1371
Aor13HI TCCGGA 1 cut(s) 817
Aor51HI AGCGCT 1 cut(s) 834
AoxI GGCC 3 cut(s) 440, 449, 507
ApeKI GCWGC 4 cut(s) 202, 479, 581, 1002
ArsI GACNNNNNNTTYG 2 cut(s) 1360, 1392
AspLEI GCGC 1 cut(s) 835
AspS9I GGNCC 5 cut(s) 372, 416, 449, 560, 1309
AsuHPI GGTGA 4 cut(s) 149, 602, 637, 908
AsuII TTCGAA 2 cut(s) 618, 1121
AsuNHI GCTAGC 2 cut(s) 599, 767
AvaI CYCGRG 1 cut(s) 1371
AvaII GGWCC 4 cut(s) 372, 416, 560, 1309
BamHI GGATCC 1 cut(s) 814
BanII GRGCYC 5 cut(s) 28, 286, 855, 951, 1066
BbrPI CACGTG 1 cut(s) 572
BbsI GAAGAC 2 cut(s) 1281, 1368
Bbv12I GWGCWC 5 cut(s) 28, 286, 855, 951, 1066
BbvI GCAGC 4 cut(s) 214, 466, 568, 1014
BccI CCATC 4 cut(s) 215, 1060, 1072, 1156
BceAI ACGGC 1 cut(s) 1218
BclI TGATCA 3 cut(s) 267, 378, 409
BcoDI GTCTC 3 cut(s) 29, 40, 153
BfaI CTAG 4 cut(s) 314, 600, 768, 1423
BfmI CTRYAG 1 cut(s) 483
BfoI RGCGCY 1 cut(s) 836
BfrI CTTAAG 1 cut(s) 305
BfuAI ACCTGC 3 cut(s) 571, 884, 1319
BglI GCCNNNNNGGC 1 cut(s) 448
BisI GCNGC 5 cut(s) 203, 226, 480, 582, 1003
BlsI GCNGC 5 cut(s) 204, 227, 481, 583, 1004
Bme18I GGWCC 4 cut(s) 372, 416, 560, 1309
BmeT110I CYCGRG 1 cut(s) 1371
BmgT120I GGNCC 5 cut(s) 372, 416, 449, 560, 1309
BmiI GGNNCC 4 cut(s) 177, 373, 816, 1310
BmrI ACTGGG 1 cut(s) 1288
BmsI GCATC 4 cut(s) 447, 748, 1036, 1141
BmtI GCTAGC 2 cut(s) 603, 771
BmuI ACTGGG 1 cut(s) 1288
BpiI GAAGAC 2 cut(s) 1281, 1368
BpmI CTGGAG 1 cut(s) 1416
Bpu14I TTCGAA 2 cut(s) 618, 1121
BpuEI CTTGAG 1 cut(s) 747
Bsa29I ATCGAT 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 572
BsaBI GATNNNNATC 1 cut(s) 408
BsaHI GRCGYC 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 1295, 1304
BsaWI WCCGGW 3 cut(s) 245, 817, 955
BsaXI ACNNNNNCTCC 2 cut(s) 1033, 1063
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 516, 1318
Bse1I ACTGG 4 cut(s) 722, 1036, 1283, 1356
Bse3DI GCAATG 1 cut(s) 1012
Bse8I GATNNNNATC 1 cut(s) 408
BseAI TCCGGA 1 cut(s) 817
BseCI ATCGAT 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 1295, 1304
BseGI GGATG 5 cut(s) 655, 739, 844, 945, 1291
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 3 cut(s) 185, 516, 1318
BseMI GCAATG 1 cut(s) 1012
BseMII CTCAG 5 cut(s) 41, 269, 292, 423, 516
BseNI ACTGG 4 cut(s) 722, 1036, 1283, 1356
BseRI GAGGAG 8 cut(s) 411, 414, 417, 1142, 1145, 1156, 1232, 1283
BseXI GCAGC 4 cut(s) 214, 466, 568, 1014
BsgI GTGCAG 1 cut(s) 549
Bsh1285I CGRYCG 1 cut(s) 1190
BshFI GGCC 3 cut(s) 442, 451, 509
BshVI ATCGAT 1 cut(s) 219
BsiEI CGRYCG 1 cut(s) 1190
BsiHKAI GWGCWC 5 cut(s) 28, 286, 855, 951, 1066
BsiHKCI CYCGRG 1 cut(s) 1371
BsiSI CCGG 5 cut(s) 246, 452, 467, 818, 956
BslFI GGGAC 1 cut(s) 1322
BslI CCNNNNNNNGG 3 cut(s) 185, 516, 1318
BsmAI GTCTC 3 cut(s) 29, 40, 153
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 1322
BsnI GGCC 3 cut(s) 442, 451, 509
BsoBI CYCGRG 1 cut(s) 1371
Bsp119I TTCGAA 2 cut(s) 618, 1121
Bsp1286I GDGCHC 5 cut(s) 28, 286, 855, 951, 1066
Bsp13I TCCGGA 1 cut(s) 817
BspACI CCGC 6 cut(s) 11, 143, 149, 225, 233, 826
BspANI GGCC 3 cut(s) 442, 451, 509
BspCNI CTCAG 5 cut(s) 40, 268, 291, 424, 517
BspDI ATCGAT 1 cut(s) 219
BspEI TCCGGA 1 cut(s) 817
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 4 cut(s) 177, 373, 816, 1310
BspMI ACCTGC 3 cut(s) 571, 884, 1319
BspOI GCTAGC 2 cut(s) 603, 771
BspPI GGATC 6 cut(s) 134, 331, 641, 809, 822, 1408
BspQI GCTCTTC 1 cut(s) 12
BspT104I TTCGAA 2 cut(s) 618, 1121
BspTI CTTAAG 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 1012
BsrI ACTGG 4 cut(s) 722, 1036, 1283, 1356
BssECI CCNNGG 2 cut(s) 1295, 1304
BssNI GRCGYC 1 cut(s) 464
BssT1I CCWWGG 1 cut(s) 1304
Bst4CI ACNGT 1 cut(s) 1313
Bst6I CTCTTC 5 cut(s) 12, 615, 922, 1133, 1235
BstACI GRCGYC 1 cut(s) 464
BstAFI CTTAAG 1 cut(s) 305
BstAPI GCANNNNNTGC 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 572
BstBI TTCGAA 2 cut(s) 618, 1121
BstC8I GCNNGC 6 cut(s) 24, 147, 601, 769, 1116, 1231
BstDEI CTNAG 6 cut(s) 27, 255, 278, 432, 525, 1074
BstDSI CCRYGG 1 cut(s) 1295
BstF5I GGATG 5 cut(s) 655, 739, 844, 945, 1291
BstH2I RGCGCY 1 cut(s) 836
BstHHI GCGC 1 cut(s) 835
BstMAI GTCTC 3 cut(s) 29, 40, 153
BstMCI CGRYCG 1 cut(s) 1190
BstNSI RCATGY 1 cut(s) 347
BstSFI CTRYAG 1 cut(s) 483
BstV1I GCAGC 4 cut(s) 214, 466, 568, 1014
BstV2I GAAGAC 2 cut(s) 1281, 1368
BstX2I RGATCY 2 cut(s) 323, 814
BstYI RGATCY 2 cut(s) 323, 814
Bsu15I ATCGAT 1 cut(s) 219
BsuRI GGCC 3 cut(s) 442, 451, 509
BsuTUI ATCGAT 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 1295
BtgZI GCGATG 1 cut(s) 1095
BtsCI GGATG 5 cut(s) 655, 739, 844, 945, 1291
BveI ACCTGC 3 cut(s) 571, 884, 1319
Cac8I GCNNGC 6 cut(s) 24, 147, 601, 769, 1116, 1231
CaiI CAGNNNCTG 1 cut(s) 208
CciI TCATGA 1 cut(s) 100
CfoI GCGC 1 cut(s) 835
Cfr13I GGNCC 5 cut(s) 372, 416, 449, 560, 1309
ClaI ATCGAT 1 cut(s) 219
CseI GACGC 1 cut(s) 472
Csp6I GTAC 2 cut(s) 715, 978
CviAII CATG 8 cut(s) 101, 344, 376, 413, 637, 889, 968, 1366
CviQI GTAC 2 cut(s) 715, 978
DdeI CTNAG 6 cut(s) 27, 255, 278, 432, 525, 1074
DraIII CACNNNGTG 2 cut(s) 572, 688
Eam1104I CTCTTC 5 cut(s) 12, 615, 922, 1133, 1235
EarI CTCTTC 5 cut(s) 12, 615, 922, 1133, 1235
Ecl136II GAGCTC 5 cut(s) 26, 284, 853, 949, 1064
Eco130I CCWWGG 1 cut(s) 1304
Eco24I GRGCYC 5 cut(s) 28, 286, 855, 951, 1066
Eco47I GGWCC 4 cut(s) 372, 416, 560, 1309
Eco47III AGCGCT 1 cut(s) 834
Eco53kI GAGCTC 5 cut(s) 26, 284, 853, 949, 1064
Eco57I CTGAAG 2 cut(s) 188, 606
Eco72I CACGTG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 1371
EcoICRI GAGCTC 5 cut(s) 26, 284, 853, 949, 1064
EcoO109I RGGNCCY 1 cut(s) 560
EcoT14I CCWWGG 1 cut(s) 1304
EcoT38I GRGCYC 5 cut(s) 28, 286, 855, 951, 1066
ErhI CCWWGG 1 cut(s) 1304
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 8 cut(s) 104, 347, 379, 416, 640, 892, 971, 1369
FaqI GGGAC 1 cut(s) 1322
FatI CATG 8 cut(s) 100, 343, 375, 412, 636, 888, 967, 1365
FauI CCCGC 1 cut(s) 4
FbaI TGATCA 3 cut(s) 267, 378, 409
FblI GTMKAC 1 cut(s) 1336
Fnu4HI GCNGC 5 cut(s) 203, 226, 480, 582, 1003
FokI GGATG 5 cut(s) 662, 726, 851, 952, 1278
FriOI GRGCYC 5 cut(s) 28, 286, 855, 951, 1066
Fsp4HI GCNGC 5 cut(s) 203, 226, 480, 582, 1003
FspBI CTAG 4 cut(s) 314, 600, 768, 1423
GlaI GCGC 1 cut(s) 834
GluI GCNGC 5 cut(s) 203, 226, 480, 582, 1003
GsuI CTGGAG 1 cut(s) 1416
HaeII RGCGCY 1 cut(s) 836
HaeIII GGCC 3 cut(s) 442, 451, 509
HapII CCGG 5 cut(s) 246, 452, 467, 818, 956
HgaI GACGC 1 cut(s) 472
HhaI GCGC 1 cut(s) 835
Hin1I GRCGYC 1 cut(s) 464
Hin1II CATG 8 cut(s) 104, 347, 379, 416, 640, 892, 971, 1369
Hin6I GCGC 1 cut(s) 833
HinP1I GCGC 1 cut(s) 833
HinfI GANTC 7 cut(s) 116, 122, 301, 593, 873, 1355, 1369
HpaII CCGG 5 cut(s) 246, 452, 467, 818, 956
HphI GGTGA 4 cut(s) 149, 602, 637, 908
Hpy166II GTNNAC 2 cut(s) 238, 1337
Hpy188I TCNGA 8 cut(s) 30, 121, 180, 258, 281, 1057, 1068, 1360
Hpy188III TCNNGA 6 cut(s) 101, 431, 706, 743, 818, 1395
Hpy8I GTNNAC 2 cut(s) 238, 1337
Hpy99I CGWCG 1 cut(s) 466
HpyAV CCTTC 6 cut(s) 163, 432, 581, 1010, 1063, 1312
HpyCH4III ACNGT 1 cut(s) 1313
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 5 cut(s) 211, 566, 739, 985, 1154
HpyF3I CTNAG 6 cut(s) 27, 255, 278, 432, 525, 1074
HpySE526I ACGT 1 cut(s) 571
Hsp92I GRCGYC 1 cut(s) 464
Hsp92II CATG 8 cut(s) 104, 347, 379, 416, 640, 892, 971, 1369
HspAI GCGC 1 cut(s) 833
Kpn2I TCCGGA 1 cut(s) 817
Ksp22I TGATCA 3 cut(s) 267, 378, 409
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 5 cut(s) 469, 674, 954, 1054, 1413
Lsp1109I GCAGC 4 cut(s) 214, 466, 568, 1014
LweI GCATC 4 cut(s) 447, 748, 1036, 1141
MaeI CTAG 4 cut(s) 314, 600, 768, 1423
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 3 cut(s) 625, 807, 1200
MfeI CAATTG 2 cut(s) 212, 444
MflI RGATCY 2 cut(s) 323, 814
MhlI GDGCHC 5 cut(s) 28, 286, 855, 951, 1066
MluCI AATT 3 cut(s) 212, 444, 491
MlyI GAGTC 1 cut(s) 1363
MmeI TCCRAC 3 cut(s) 377, 510, 1019
MroI TCCGGA 1 cut(s) 817
MseI TTAA 4 cut(s) 306, 801, 912, 1088
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 5 cut(s) 246, 452, 467, 818, 956
MunI CAATTG 2 cut(s) 212, 444
NheI GCTAGC 2 cut(s) 599, 767
NlaIII CATG 8 cut(s) 104, 347, 379, 416, 640, 892, 971, 1369
NlaIV GGNNCC 4 cut(s) 177, 373, 816, 1310
NmeAIII GCCGAG 1 cut(s) 535
NmuCI GTSAC 1 cut(s) 625
NspI RCATGY 1 cut(s) 347
NspV TTCGAA 2 cut(s) 618, 1121
PaeR7I CTCGAG 1 cut(s) 1371
PagI TCATGA 1 cut(s) 100
PaqCI CACCTGC 2 cut(s) 884, 1319
PciI ACATGT 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 1118
PfeI GAWTC 6 cut(s) 116, 122, 301, 593, 873, 1355
PkrI GCNGC 5 cut(s) 204, 227, 481, 583, 1004
Ple19I CGATCG 1 cut(s) 1190
PleI GAGTC 1 cut(s) 1363
PmaCI CACGTG 1 cut(s) 572
PmlI CACGTG 1 cut(s) 572
PpsI GAGTC 1 cut(s) 1363
Ppu21I YACGTR 1 cut(s) 572
PpuMI RGGWCCY 1 cut(s) 560
PscI ACATGT 1 cut(s) 343
Psp124BI GAGCTC 5 cut(s) 28, 286, 855, 951, 1066
Psp5II RGGWCCY 1 cut(s) 560
PspCI CACGTG 1 cut(s) 572
PspN4I GGNNCC 4 cut(s) 177, 373, 816, 1310
PspPI GGNCC 5 cut(s) 372, 416, 449, 560, 1309
PspPPI RGGWCCY 1 cut(s) 560
PspXI VCTCGAGB 1 cut(s) 1371
PstNI CAGNNNCTG 1 cut(s) 208
PsuI RGATCY 2 cut(s) 323, 814
PvuI CGATCG 1 cut(s) 1190
RsaI GTAC 2 cut(s) 716, 979
RsaNI GTAC 2 cut(s) 715, 978
SacI GAGCTC 5 cut(s) 28, 286, 855, 951, 1066
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 4 cut(s) 306, 801, 912, 1088
SatI GCNGC 5 cut(s) 203, 226, 480, 582, 1003
Sau96I GGNCC 5 cut(s) 372, 416, 449, 560, 1309
SchI GAGTC 1 cut(s) 1363
SduI GDGCHC 5 cut(s) 28, 286, 855, 951, 1066
SfaNI GCATC 4 cut(s) 447, 748, 1036, 1141
SfcI CTRYAG 1 cut(s) 483
SfiI GGCCNNNNNGGCC 1 cut(s) 448
Sfr274I CTCGAG 1 cut(s) 1371
SfuI TTCGAA 2 cut(s) 618, 1121
SinI GGWCC 4 cut(s) 372, 416, 560, 1309
SlaI CTCGAG 1 cut(s) 1371
SmlI CTYRAG 3 cut(s) 305, 762, 1371
SmoI CTYRAG 3 cut(s) 305, 762, 1371
Sse9I AATT 3 cut(s) 212, 444, 491
SsiI CCGC 6 cut(s) 11, 143, 149, 225, 233, 826
SspMI CTAG 4 cut(s) 314, 600, 768, 1423
SstI GAGCTC 5 cut(s) 28, 286, 855, 951, 1066
StyI CCWWGG 1 cut(s) 1304
TaaI ACNGT 1 cut(s) 1313
TaiI ACGT 1 cut(s) 574
TaqI TCGA 6 cut(s) 219, 618, 989, 1121, 1190, 1372
TasI AATT 3 cut(s) 212, 444, 491
TatI WGTACW 1 cut(s) 977
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 6 cut(s) 116, 122, 301, 593, 873, 1355
Tru1I TTAA 4 cut(s) 306, 801, 912, 1088
Tru9I TTAA 4 cut(s) 306, 801, 912, 1088
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 4 cut(s) 202, 479, 581, 1002
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 3 cut(s) 74, 414, 1098
TspGWI ACGGA 2 cut(s) 336, 1284
Vha464I CTTAAG 1 cut(s) 305
VpaK11BI GGWCC 4 cut(s) 372, 416, 560, 1309
XceI RCATGY 1 cut(s) 347
XhoI CTCGAG 1 cut(s) 1371
XmiI GTMKAC 1 cut(s) 1336
XspI CTAG 4 cut(s) 314, 600, 768, 1423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.