Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8467303.1

Orthogroup ID

OG0001274

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 541

Gene Structure 541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8467303.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 541 bp

tgatgaggagctactggcaggtgatgtgagtggtgttaaagcggcacgaaaaagagatgagtggatgacagagcttccaccggagaggaaacatggtatgagtacaatgcagtcgacaatgtttagcaggagtgcaaaacgagggcgtggggatactagtggatggactgatgctccttctgaaagagcttggaaagctaagatggattatttacaagcctataatgagtttgcatcacttgctttgaatgaggaggagaggaagaagagtctagaggcagagttgatggacaattacaagaaacataaacgatcgaaatcattgctgcaaaagcaccaagaggagattagagcgaagagaaaatactccaagcaacaggcagaggaggaagactgggtggggaaacatccgtggaatccttgggaccgtgagaaagatttggcaggtagtagacaacgtgtgcaattggattcagaaaacatgactcgaggtttatcatctcggttttctggaggctcatatcagaggaacttcctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3752 DnaJ

Protein Analysis

179

Amino Acids

20.9

Weight (kDa)

9.32

Isoelectric Point (pI)

60.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65280 AT1G65280
fragaria_vesca	FvH4_3g44892 FvH4_3g44892 FvH4_3g44892 FvH4_3g44931 FvH4_3g44932 FvH4_3g44960 FvH4_3g44966 FvH4_4g06470
malus_domestica	MD04G1003500.v1.1
prunus_persica	Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1
pyrus_communis	pycom04g00360
rosa_chinensis	RchiOBHm_Chr4g0398261 RchiOBHm_Chr5g0081671 RchiOBHm_Chr5g0082081 RchiOBHm_Chr5g0082701
rosa_laevigata	RLG00000036957 RLG00000036962 RLG00000036979
rosa_multiflora	Rmu_co8467303.1_g000001 Rmu_sc0000303.1_g000009 Rmu_sc0001687.1_g000002 Rmu_sc0002176.1_g000036 Rmu_sc0002723.1_g000006 Rmu_sc0002723.1_g000051 Rmu_sc0002723.1_g000052 Rmu_sc0004094.1_g000006 Rmu_sc0004835.1_g000037 Rmu_sc0012399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343240
rosa_rugosa	Rorug04G0007200 Rorug04G0007300 Rorug05G0477600
rosa_samantha	Rh4AG084700 Rh4BG082100 Rh4CG092100 Rh4DG077200 Rh5AG529100 Rh5BG554300 Rh5BG554800 Rh5BG555700 Rh5CG577200 Rh5CG577700 Rh5CG578400 Rh5DG563900 Rh5DG564100 Rh5DG565000 Rh5DG565100
rosa_wichuraiana	Rw0G022970 Rw4G007040 Rw5G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	9
Acc36I	ACCTGC	2 cut(s)	9, 435
AccI	GTMKAC	2 cut(s)	114, 452
AciI	CCGC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	458
AgsI	TTSAA	1 cut(s)	248
AhlI	ACTAGT	1 cut(s)	156
AluBI	AGCT	4 cut(s)	11, 74, 189, 198
AluI	AGCT	4 cut(s)	11, 74, 189, 198
Ama87I	CYCGRG	1 cut(s)	487
ApeKI	GCWGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	33
AvaI	CYCGRG	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	425
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
BbsI	GAAGAC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	3 cut(s)	157, 197, 281
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciVI	GTATCC	1 cut(s)	146
BcuI	ACTAGT	1 cut(s)	156
BfaI	CTAG	2 cut(s)	157, 273
BfuAI	ACCTGC	2 cut(s)	9, 435
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	2 cut(s)	43, 327
BlsI	GCNGC	2 cut(s)	44, 328
Bme18I	GGWCC	1 cut(s)	425
BmeT110I	CYCGRG	1 cut(s)	487
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	426
BmrI	ACTGGG	1 cut(s)	404
BmsI	GCATC	2 cut(s)	161, 243
BmuI	ACTGGG	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	397
BpmI	CTGGAG	1 cut(s)	532
BsaBI	GATNNNNATC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	411, 420
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bse1I	ACTGG	2 cut(s)	19, 399
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	411, 420
BseGI	GGATG	3 cut(s)	70, 168, 407
BseJI	GATNNNNATC	1 cut(s)	317
BseMI	GCAATG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	19, 399
BseRI	GAGGAG	5 cut(s)	21, 267, 270, 357, 399
BseXI	GCAGC	1 cut(s)	313
Bsh1285I	CGRYCG	1 cut(s)	315
BsiEI	CGRYCG	1 cut(s)	315
BsiHKCI	CYCGRG	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	438
BsmFI	GGGAC	1 cut(s)	438
BsoBI	CYCGRG	1 cut(s)	487
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	426
BspMI	ACCTGC	2 cut(s)	9, 435
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	19, 399
BssECI	CCNNGG	2 cut(s)	411, 420
BssMI	GATC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	429
Bst6I	CTCTTC	2 cut(s)	261, 351
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	199
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	3 cut(s)	70, 168, 407
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstMCI	CGRYCG	1 cut(s)	315
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 240, 332
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	3 cut(s)	70, 168, 407
BveI	ACCTGC	2 cut(s)	9, 435
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	93, 482
CviJI	RGCY	6 cut(s)	11, 74, 189, 198, 219, 517
CviKI_1	RGCY	6 cut(s)	11, 74, 189, 198, 219, 517
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	261, 351
EarI	CTCTTC	2 cut(s)	261, 351
Eco130I	CCWWGG	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	425
Eco88I	CYCGRG	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	2 cut(s)	96, 485
FaiI	YATR	6 cut(s)	94, 99, 223, 307, 483, 521
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	2 cut(s)	92, 481
FblI	GTMKAC	2 cut(s)	114, 452
Fnu4HI	GCNGC	2 cut(s)	43, 327
FokI	GGATG	3 cut(s)	77, 175, 394
Fsp4HI	GCNGC	2 cut(s)	43, 327
FspBI	CTAG	2 cut(s)	157, 273
GluI	GCNGC	2 cut(s)	43, 327
GsuI	CTGGAG	1 cut(s)	532
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	2 cut(s)	96, 485
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	4 cut(s)	269, 416, 471, 485
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	33
Hpy166II	GTNNAC	2 cut(s)	115, 453
Hpy188I	TCNGA	3 cut(s)	182, 476, 526
Hpy188III	TCNNGA	2 cut(s)	273, 511
Hpy8I	GTNNAC	2 cut(s)	115, 453
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	5 cut(s)	110, 135, 234, 329, 464
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 240, 332
HpyF3I	CTNAG	1 cut(s)	199
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	2 cut(s)	96, 485
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	2 cut(s)	8, 179
LpnPI	CCDG	7 cut(s)	4, 94, 113, 363, 380, 430, 496
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	2 cut(s)	161, 243
MaeI	CTAG	2 cut(s)	157, 273
MaeII	ACGT	1 cut(s)	458
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	4 cut(s)	275, 278, 368, 402
MfeI	CAATTG	1 cut(s)	465
MluCI	AATT	2 cut(s)	293, 465
MlyI	GAGTC	2 cut(s)	278, 479
MseI	TTAA	1 cut(s)	37
MspI	CCGG	1 cut(s)	81
MunI	CAATTG	1 cut(s)	465
MwoI	GCNNNNNNNGC	3 cut(s)	195, 240, 332
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	2 cut(s)	96, 485
NlaIV	GGNNCC	1 cut(s)	426
PaeR7I	CTCGAG	1 cut(s)	487
PaqCI	CACCTGC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	416, 471
PkrI	GCNGC	2 cut(s)	44, 328
Ple19I	CGATCG	1 cut(s)	315
PleI	GAGTC	2 cut(s)	277, 479
PpsI	GAGTC	2 cut(s)	277, 479
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	425
PspXI	VCTCGAGB	1 cut(s)	487
PvuI	CGATCG	1 cut(s)	315
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	37
SatI	GCNGC	2 cut(s)	43, 327
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	2 cut(s)	278, 479
SetI	ASST	8 cut(s)	13, 23, 76, 191, 200, 449, 461, 494
SfaNI	GCATC	2 cut(s)	161, 243
Sfr274I	CTCGAG	1 cut(s)	487
SinI	GGWCC	1 cut(s)	425
SlaI	CTCGAG	1 cut(s)	487
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
SpeI	ACTAGT	1 cut(s)	156
Sse9I	AATT	2 cut(s)	293, 465
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	2 cut(s)	157, 273
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	429
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	3 cut(s)	114, 315, 488
TasI	AATT	2 cut(s)	293, 465
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	2 cut(s)	416, 471
Tru1I	TTAA	1 cut(s)	37
Tru9I	TTAA	1 cut(s)	37
TseI	GCWGC	1 cut(s)	326
TspGWI	ACGGA	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	425
XbaI	TCTAGA	1 cut(s)	272
XhoI	CTCGAG	1 cut(s)	487
XmiI	GTMKAC	2 cut(s)	114, 452
XspI	CTAG	2 cut(s)	157, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.