Rh5BG555700

Protein of unknown function (DUF3752)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001274
Physical Location & Seq
Forward (+)
88366786 .. 88367379
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG555700.1

Sequence Viewer

Length: 594 bp
ATGCGGGAAGCAGCAATGTGGAGAAAGATGCAGGGGATTTCCATGGAGGGTGATGAGGAGCTACTGGCAGGTGGTGATGTGAGTGGTGTTAAAGTGGCACGAAAAAGAGATGAGTGGATGACAGAGCTTCCACCAGAGAGGAAACATGGTATGAGTACAAGGCAGTCGACAATGTTTAGCAGGAGTGCTAAACAAGGGCGTGGGGATACCAGTGGATGGACTGATGCTCCTTCTGAAAGAGCTTGGAAAGCTAAGATGGAGTACTTACAAGCCTATAATGAGTTTGCATCACTTGCTTCGAATGAGGAGGAGAGGAAGAGGAGTTTAGTGGCAGAGTTGATGGACAATTATAAGAAAGATAAACGATCGAAATCATTGCTGCAAAAGCACCAAGAGGAGATTAGAGCAAAGAGAAAATACTCCAAGCAACAGGCAGAGGAGGAAGACTGGGTGGGGAAACATCCGTGGAAGCCTTGGGACCGTGAGAAAGATTTGGCAGGTGGTAGACAACGTGTGAAATTGGATTCAAAAAACATGACTCGAGGTTTGTCATCTCGGTTTTCTGGAGGATCATACCAGAGGAACTTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3752 DnaJ

Protein Analysis

197

Amino Acids

22.93

Weight (kDa)

9.72

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3752 PF12572 44 - 188 7.4e-24 Protein of unknown function (DUF3752)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AarI CACCTGC 2 cut(s) 59, 488
Acc36I ACCTGC 2 cut(s) 59, 488
AccB7I CCANNNNNTGG 1 cut(s) 216
AccI GTMKAC 2 cut(s) 167, 505
AciI CCGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 577
AfaI GTAC 2 cut(s) 157, 263
AfiI CCNNNNNNNGG 1 cut(s) 216
AflIII ACRYGT 1 cut(s) 511
AgsI TTSAA 1 cut(s) 528
AluBI AGCT 4 cut(s) 61, 127, 242, 251
AluI AGCT 4 cut(s) 61, 127, 242, 251
AlwI GGATC 1 cut(s) 577
Ama87I CYCGRG 1 cut(s) 540
ApeKI GCWGC 2 cut(s) 11, 379
ArsI GACNNNNNNTTYG 2 cut(s) 529, 561
AspS9I GGNCC 1 cut(s) 478
AsuHPI GGTGA 2 cut(s) 62, 86
AsuII TTCGAA 1 cut(s) 299
AvaI CYCGRG 1 cut(s) 540
AvaII GGWCC 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 450
BbvI GCAGC 2 cut(s) 23, 366
BccI CCATC 3 cut(s) 210, 250, 334
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciVI GTATCC 1 cut(s) 199
BfuAI ACCTGC 2 cut(s) 59, 488
BfuI GTATCC 1 cut(s) 199
BisI GCNGC 2 cut(s) 12, 380
BlsI GCNGC 2 cut(s) 13, 381
BmcAI AGTACT 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 478
BmeT110I CYCGRG 1 cut(s) 540
BmgT120I GGNCC 1 cut(s) 478
BmiI GGNNCC 1 cut(s) 479
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 3 cut(s) 18, 214, 296
BmuI ACTGGG 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 450
BpmI CTGGAG 1 cut(s) 585
Bpu14I TTCGAA 1 cut(s) 299
BsaBI GATNNNNATC 1 cut(s) 370
BsaJI CCNNGG 3 cut(s) 42, 464, 473
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse1I ACTGG 3 cut(s) 69, 210, 452
Bse3DI GCAATG 2 cut(s) 21, 374
Bse8I GATNNNNATC 1 cut(s) 370
BseDI CCNNGG 3 cut(s) 42, 464, 473
BseGI GGATG 3 cut(s) 123, 221, 460
BseJI GATNNNNATC 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMI GCAATG 2 cut(s) 21, 374
BseNI ACTGG 3 cut(s) 69, 210, 452
BseRI GAGGAG 6 cut(s) 71, 320, 323, 334, 410, 452
BseXI GCAGC 2 cut(s) 23, 366
Bsh1285I CGRYCG 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 368
BsiHKCI CYCGRG 1 cut(s) 540
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 491
BsoBI CYCGRG 1 cut(s) 540
Bsp119I TTCGAA 1 cut(s) 299
Bsp143I GATC 2 cut(s) 365, 569
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 1 cut(s) 4
BspLI GGNNCC 1 cut(s) 479
BspMI ACCTGC 2 cut(s) 59, 488
BspPI GGATC 1 cut(s) 577
BspT104I TTCGAA 1 cut(s) 299
BsrDI GCAATG 2 cut(s) 21, 374
BsrI ACTGG 3 cut(s) 69, 210, 452
BssECI CCNNGG 3 cut(s) 42, 464, 473
BssMI GATC 2 cut(s) 365, 569
BssT1I CCWWGG 2 cut(s) 42, 473
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 2 cut(s) 42, 464
BstF5I GGATG 3 cut(s) 123, 221, 460
BstKTI GATC 2 cut(s) 368, 572
BstMBI GATC 2 cut(s) 365, 569
BstMCI CGRYCG 1 cut(s) 368
BstMWI GCNNNNNNNGC 3 cut(s) 248, 293, 385
BstV1I GCAGC 2 cut(s) 23, 366
BstV2I GAAGAC 1 cut(s) 450
BsuI GTATCC 1 cut(s) 199
BtgI CCRYGG 2 cut(s) 42, 464
BtsCI GGATG 3 cut(s) 123, 221, 460
BtsIMutI CAGTG 1 cut(s) 217
BveI ACCTGC 2 cut(s) 59, 488
Cfr13I GGNCC 1 cut(s) 478
Csp6I GTAC 2 cut(s) 156, 262
CviAII CATG 3 cut(s) 43, 146, 535
CviJI RGCY 6 cut(s) 61, 127, 242, 251, 272, 472
CviKI_1 RGCY 6 cut(s) 61, 127, 242, 251, 272, 472
CviQI GTAC 2 cut(s) 156, 262
DdeI CTNAG 1 cut(s) 252
DpnI GATC 2 cut(s) 367, 571
DpnII GATC 2 cut(s) 365, 569
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 2 cut(s) 42, 473
Eco47I GGWCC 1 cut(s) 478
Eco88I CYCGRG 1 cut(s) 540
EcoT14I CCWWGG 2 cut(s) 42, 473
ErhI CCWWGG 2 cut(s) 42, 473
FaeI CATG 3 cut(s) 46, 149, 538
FaiI YATR 7 cut(s) 44, 147, 152, 276, 351, 536, 574
FaqI GGGAC 1 cut(s) 491
FatI CATG 3 cut(s) 42, 145, 534
FblI GTMKAC 2 cut(s) 167, 505
Fnu4HI GCNGC 2 cut(s) 12, 380
FokI GGATG 3 cut(s) 130, 228, 447
Fsp4HI GCNGC 2 cut(s) 12, 380
GluI GCNGC 2 cut(s) 12, 380
GsuI CTGGAG 1 cut(s) 585
Hin1II CATG 3 cut(s) 46, 149, 538
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 2 cut(s) 524, 538
HphI GGTGA 2 cut(s) 62, 86
Hpy166II GTNNAC 2 cut(s) 168, 506
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 564
Hpy8I GTNNAC 2 cut(s) 168, 506
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 3 cut(s) 31, 287, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 293, 385
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 511
Hsp92II CATG 3 cut(s) 46, 149, 538
Kzo9I GATC 2 cut(s) 365, 569
LmnI GCTCC 2 cut(s) 58, 232
Lsp1109I GCAGC 2 cut(s) 23, 366
LweI GCATC 3 cut(s) 18, 214, 296
MaeII ACGT 1 cut(s) 511
MalI GATC 2 cut(s) 367, 571
MboI GATC 2 cut(s) 365, 569
MboII GAAGA 2 cut(s) 328, 455
MluCI AATT 2 cut(s) 346, 518
MlyI GAGTC 1 cut(s) 532
MseI TTAA 1 cut(s) 90
MwoI GCNNNNNNNGC 3 cut(s) 248, 293, 385
NcoI CCATGG 1 cut(s) 42
NdeII GATC 2 cut(s) 365, 569
NlaIII CATG 3 cut(s) 46, 149, 538
NlaIV GGNNCC 1 cut(s) 479
NspV TTCGAA 1 cut(s) 299
PaeR7I CTCGAG 1 cut(s) 540
PaqCI CACCTGC 2 cut(s) 59, 488
PfeI GAWTC 1 cut(s) 524
PflMI CCANNNNNTGG 1 cut(s) 216
PkrI GCNGC 2 cut(s) 13, 381
Ple19I CGATCG 1 cut(s) 368
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
PsiI TTATAA 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 479
PspPI GGNCC 1 cut(s) 478
PspXI VCTCGAGB 1 cut(s) 540
PvuI CGATCG 1 cut(s) 368
RsaI GTAC 2 cut(s) 157, 263
RsaNI GTAC 2 cut(s) 156, 262
SalI GTCGAC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 12, 380
Sau3AI GATC 2 cut(s) 365, 569
Sau96I GGNCC 1 cut(s) 478
ScaI AGTACT 1 cut(s) 263
SchI GAGTC 1 cut(s) 532
SetI ASST 8 cut(s) 63, 73, 129, 244, 253, 502, 514, 547
SfaNI GCATC 3 cut(s) 18, 214, 296
Sfr274I CTCGAG 1 cut(s) 540
SfuI TTCGAA 1 cut(s) 299
SinI GGWCC 1 cut(s) 478
SlaI CTCGAG 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 540
SmoI CTYRAG 1 cut(s) 540
Sse9I AATT 2 cut(s) 346, 518
SsiI CCGC 1 cut(s) 4
StyI CCWWGG 2 cut(s) 42, 473
TaaI ACNGT 1 cut(s) 482
TaiI ACGT 1 cut(s) 514
TaqI TCGA 4 cut(s) 167, 299, 368, 541
TasI AATT 2 cut(s) 346, 518
TatI WGTACW 2 cut(s) 155, 261
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 217
TseI GCWGC 2 cut(s) 11, 379
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 478
XhoI CTCGAG 1 cut(s) 540
XmiI GTMKAC 2 cut(s) 167, 505
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.