RLG00000036979

Protein of unknown function (DUF3752)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001274
Physical Location & Seq
Reverse (-)
87230589 .. 87231737
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036979

Sequence Viewer

Length: 1128 bp
ATGAAATCGAAAGACAACGATAAGAAGAAGCAGAGAGCTTATGAGATTGATGATGATTCTGGGTCTTCGAGCGGTGGTGATCCGCAAGTGGTTGTTCGAGACTTGTTGAAGGAATTTCCTAATATTGGGTGCGATTTGAAGCAACTTTTGGAAGTGATCGATGGGGGCAAAGCGGTTGACATAAATGGACTAGCTCAGAAACATCTGATCAAGCCTCTCAGGACTCTGTTCCTTTCCTTGAATCTCAAGGAACTGAATCACGGAGGTTTTGTACTGCCTCCAAATGTTCGTCCGACTTTGGTGGTTGTTGGTTCCATGATTACGTGTTCTTTAGATCATGTTGTTCCTCCTGAGAGAAGGCCAATTGGCCCGGAGAAGCCGTCGCCGGAGATACTTGATGCTGCAGCCAAATTGAGAGAGGCAGAGGCCGAGTTAAGGGAAGCTGAGTTAGAAGAAAAAGATGATGGGGTTTTTATTGGACCTACACCACGTGTTGTGGCTGCTGAAGCTGAATCAGCTAACCAAGCTGATCGGTTTGAAGAGGTGACAAGGATCATGGAAGCAGAGGATGATAGCCCCTATGAGATACTAGGATCAAACCACAATGTCTCTGCTGATGACATCAAGAAAAGGTACTGGATGTTGTCACTTTTGGTGCACCCTGATAAGTGCTCACACCCTCAAGCCAACCAAACATCTGTGAAGCTGAACAAGGCCTTTAAAGAACTACAGGATCCGGAGAAGCGGAGAGTGCTGGATGAGAAGATTGAGCTCAAGGAGAAGCAGGAGGGATTCATGGTTGAGTTGAGGGCAATGCGGGAAGCAGCAATGTGGAGAAAGATGCAGGGGATTTCCATGGAGGGTGATGTGAGTGGTGTTAAAGCGGCACGAAAAAGAGATGAGTGGATGACAGAGCTTCCACCGGAGAGGAAACATGGTATGAGTACAATGCAGTCGACAATGTTCAGCAGGAGTGCTAAACAAGGGCGTGGGGATACCAGTGGATGGACTGATGCTCCTTTTGAAAGAGCTTGGAAAGCTAAGATGGAGTACTTACAAGCCTATAATGAGTTTGCATCACTTGCTTCGAATGAAGAGGAGAGGAAGAGGAGTTTAGAGGCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3752 DnaJ

Protein Analysis

376

Amino Acids

42.26

Weight (kDa)

5.47

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 193 - 253 3.4e-15 DnaJ domain
DUF3752 PF12572 307 - 371 3.1e-06 Protein of unknown function (DUF3752)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1005
AccBSI CCGCTC 1 cut(s) 72
AccI GTMKAC 1 cut(s) 956
AccIII TCCGGA 1 cut(s) 736
AciI CCGC 6 cut(s) 72, 83, 173, 745, 817, 884
AclWI GGATC 5 cut(s) 74, 560, 601, 728, 741
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 525
AcvI CACGTG 1 cut(s) 491
AdeI CACNNNGTG 1 cut(s) 491
AfaI GTAC 4 cut(s) 273, 635, 946, 1052
AfiI CCNNNNNNNGG 3 cut(s) 125, 435, 1005
AflIII ACRYGT 2 cut(s) 323, 490
AgsI TTSAA 5 cut(s) 109, 139, 241, 539, 1025
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
Alw21I GWGCWC 3 cut(s) 660, 674, 774
Alw26I GTCTC 2 cut(s) 93, 613
Alw44I GTGCAC 1 cut(s) 656
AlwI GGATC 5 cut(s) 74, 560, 601, 728, 741
Aor13HI TCCGGA 1 cut(s) 736
AoxI GGCC 4 cut(s) 359, 367, 426, 714
ApaLI GTGCAC 1 cut(s) 656
ApeKI GCWGC 4 cut(s) 401, 404, 500, 824
ApoI RAATTY 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 368, 479
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 3 cut(s) 89, 556, 875
AsuII TTCGAA 1 cut(s) 1088
AvaII GGWCC 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 660
BamHI GGATCC 1 cut(s) 733
BanII GRGCYC 1 cut(s) 774
BbrPI CACGTG 1 cut(s) 491
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 3 cut(s) 660, 674, 774
BbvI GCAGC 4 cut(s) 388, 416, 487, 836
BccI CCATC 4 cut(s) 155, 458, 999, 1039
BceAI ACGGC 1 cut(s) 364
BciVI GTATCC 1 cut(s) 988
BclI TGATCA 1 cut(s) 207
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 2 cut(s) 93, 613
BfaI CTAG 2 cut(s) 191, 590
BfmI CTRYAG 2 cut(s) 402, 728
BfuI GTATCC 1 cut(s) 988
BisI GCNGC 5 cut(s) 402, 405, 501, 825, 885
BlsI GCNGC 5 cut(s) 403, 406, 502, 826, 886
BmcAI AGTACT 1 cut(s) 1052
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 2 cut(s) 368, 479
BmiI GGNNCC 2 cut(s) 313, 735
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 4 cut(s) 388, 831, 1003, 1085
BpiI GAAGAC 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 1088
BpuEI CTTGAG 3 cut(s) 230, 666, 758
BpuMI CCSGG 1 cut(s) 371
Bsa29I ATCGAT 1 cut(s) 159
BsaAI YACGTR 2 cut(s) 324, 491
BsaJI CCNNGG 1 cut(s) 855
BsaWI WCCGGW 2 cut(s) 736, 922
BsaXI ACNNNNNCTCC 6 cut(s) 255, 285, 365, 395, 1000, 1030
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 435, 1005
Bse1I ACTGG 2 cut(s) 641, 999
Bse3DI GCAATG 2 cut(s) 819, 834
BseAI TCCGGA 1 cut(s) 736
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 855
BseGI GGATG 5 cut(s) 574, 645, 763, 912, 1010
BseLI CCNNNNNNNGG 3 cut(s) 125, 435, 1005
BseMI GCAATG 2 cut(s) 819, 834
BseMII CTCAG 4 cut(s) 209, 232, 342, 435
BseNI ACTGG 2 cut(s) 641, 999
BseRI GAGGAG 2 cut(s) 1112, 1123
BseSI GKGCMC 1 cut(s) 660
BseXI GCAGC 4 cut(s) 388, 416, 487, 836
BshFI GGCC 4 cut(s) 361, 369, 428, 716
BshVI ATCGAT 1 cut(s) 159
BsiHKAI GWGCWC 3 cut(s) 660, 674, 774
BsiSI CCGG 4 cut(s) 371, 386, 737, 923
BslI CCNNNNNNNGG 3 cut(s) 125, 435, 1005
BsmAI GTCTC 2 cut(s) 93, 613
BsnI GGCC 4 cut(s) 361, 369, 428, 716
Bsp119I TTCGAA 1 cut(s) 1088
Bsp1286I GDGCHC 3 cut(s) 660, 674, 774
Bsp13I TCCGGA 1 cut(s) 736
Bsp143I GATC 8 cut(s) 79, 156, 207, 334, 529, 552, 593, 733
Bsp19I CCATGG 1 cut(s) 855
BspACI CCGC 6 cut(s) 72, 83, 173, 745, 817, 884
BspANI GGCC 4 cut(s) 361, 369, 428, 716
BspCNI CTCAG 4 cut(s) 208, 231, 343, 436
BspDI ATCGAT 1 cut(s) 159
BspEI TCCGGA 1 cut(s) 736
BspLI GGNNCC 2 cut(s) 313, 735
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 5 cut(s) 74, 560, 601, 728, 741
BspT104I TTCGAA 1 cut(s) 1088
BsrBI CCGCTC 1 cut(s) 72
BsrDI GCAATG 2 cut(s) 819, 834
BsrI ACTGG 2 cut(s) 641, 999
BssECI CCNNGG 1 cut(s) 855
BssMI GATC 8 cut(s) 79, 156, 207, 334, 529, 552, 593, 733
BssT1I CCWWGG 1 cut(s) 855
Bst6I CTCTTC 3 cut(s) 534, 1089, 1100
BstAPI GCANNNNNTGC 1 cut(s) 1082
BstBAI YACGTR 2 cut(s) 324, 491
BstBI TTCGAA 1 cut(s) 1088
BstDEI CTNAG 5 cut(s) 195, 218, 351, 444, 1041
BstDSI CCRYGG 1 cut(s) 855
BstF5I GGATG 5 cut(s) 574, 645, 763, 912, 1010
BstKTI GATC 8 cut(s) 82, 159, 210, 337, 532, 555, 596, 736
BstMAI GTCTC 2 cut(s) 93, 613
BstMBI GATC 8 cut(s) 79, 156, 207, 334, 529, 552, 593, 733
BstMWI GCNNNNNNNGC 6 cut(s) 506, 515, 524, 751, 1037, 1082
BstSCI CCNGG 1 cut(s) 369
BstSFI CTRYAG 2 cut(s) 402, 728
BstSLI GKGCMC 1 cut(s) 660
BstV1I GCAGC 4 cut(s) 388, 416, 487, 836
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 733
BstYI RGATCY 1 cut(s) 733
Bsu15I ATCGAT 1 cut(s) 159
BsuI GTATCC 1 cut(s) 988
BsuRI GGCC 4 cut(s) 361, 369, 428, 716
BsuTUI ATCGAT 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 855
BtsCI GGATG 5 cut(s) 574, 645, 763, 912, 1010
BtsIMutI CAGTG 1 cut(s) 1006
Cfr13I GGNCC 2 cut(s) 368, 479
ClaI ATCGAT 1 cut(s) 159
Csp6I GTAC 4 cut(s) 272, 634, 945, 1051
CviAII CATG 6 cut(s) 316, 338, 556, 796, 856, 935
CviQI GTAC 4 cut(s) 272, 634, 945, 1051
DdeI CTNAG 5 cut(s) 195, 218, 351, 444, 1041
DpnI GATC 8 cut(s) 81, 158, 209, 336, 531, 554, 595, 735
DpnII GATC 8 cut(s) 79, 156, 207, 334, 529, 552, 593, 733
DraI TTTAAA 1 cut(s) 721
DraIII CACNNNGTG 1 cut(s) 491
Eam1104I CTCTTC 3 cut(s) 534, 1089, 1100
EarI CTCTTC 3 cut(s) 534, 1089, 1100
Ecl136II GAGCTC 1 cut(s) 772
Eco130I CCWWGG 1 cut(s) 855
Eco147I AGGCCT 1 cut(s) 716
Eco24I GRGCYC 1 cut(s) 774
Eco47I GGWCC 1 cut(s) 479
Eco53kI GAGCTC 1 cut(s) 772
Eco57I CTGAAG 1 cut(s) 525
Eco72I CACGTG 1 cut(s) 491
EcoICRI GAGCTC 1 cut(s) 772
EcoT14I CCWWGG 1 cut(s) 855
EcoT38I GRGCYC 1 cut(s) 774
ErhI CCWWGG 1 cut(s) 855
FaeI CATG 6 cut(s) 319, 341, 559, 799, 859, 938
FatI CATG 6 cut(s) 315, 337, 555, 795, 855, 934
FauI CCCGC 1 cut(s) 810
FbaI TGATCA 1 cut(s) 207
FblI GTMKAC 1 cut(s) 956
Fnu4HI GCNGC 5 cut(s) 402, 405, 501, 825, 885
FokI GGATG 5 cut(s) 581, 652, 770, 919, 1017
FriOI GRGCYC 1 cut(s) 774
Fsp4HI GCNGC 5 cut(s) 402, 405, 501, 825, 885
FspBI CTAG 2 cut(s) 191, 590
GluI GCNGC 5 cut(s) 402, 405, 501, 825, 885
HaeIII GGCC 4 cut(s) 361, 369, 428, 716
HapII CCGG 4 cut(s) 371, 386, 737, 923
Hin1II CATG 6 cut(s) 319, 341, 559, 799, 859, 938
HincII GTYRAC 2 cut(s) 178, 957
HindII GTYRAC 2 cut(s) 178, 957
HinfI GANTC 6 cut(s) 56, 223, 241, 256, 512, 792
HpaII CCGG 4 cut(s) 371, 386, 737, 923
HphI GGTGA 3 cut(s) 89, 556, 875
Hpy166II GTNNAC 3 cut(s) 178, 658, 957
Hpy188I TCNGA 3 cut(s) 198, 207, 294
Hpy188III TCNNGA 5 cut(s) 98, 220, 350, 625, 737
Hpy8I GTNNAC 3 cut(s) 178, 658, 957
Hpy99I CGWCG 1 cut(s) 385
HpyAV CCTTC 2 cut(s) 103, 351
HpyCH4IV ACGT 2 cut(s) 323, 490
HpyCH4V TGCA 5 cut(s) 404, 658, 844, 952, 1076
HpyF10VI GCNNNNNNNGC 6 cut(s) 506, 515, 524, 751, 1037, 1082
HpyF3I CTNAG 5 cut(s) 195, 218, 351, 444, 1041
HpySE526I ACGT 2 cut(s) 323, 490
Hsp92II CATG 6 cut(s) 319, 341, 559, 799, 859, 938
Kpn2I TCCGGA 1 cut(s) 736
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 8 cut(s) 79, 156, 207, 334, 529, 552, 593, 733
LmnI GCTCC 1 cut(s) 1021
Lsp1109I GCAGC 4 cut(s) 388, 416, 487, 836
LweI GCATC 4 cut(s) 388, 831, 1003, 1085
MaeI CTAG 2 cut(s) 191, 590
MaeII ACGT 2 cut(s) 323, 490
MaeIII GTNAC 2 cut(s) 544, 645
MalI GATC 8 cut(s) 81, 158, 209, 336, 531, 554, 595, 735
MbiI CCGCTC 1 cut(s) 72
MboI GATC 8 cut(s) 79, 156, 207, 334, 529, 552, 593, 733
MboII GAAGA 7 cut(s) 37, 57, 464, 551, 775, 1106, 1117
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 1 cut(s) 733
MhlI GDGCHC 3 cut(s) 660, 674, 774
MluCI AATT 3 cut(s) 113, 363, 410
MlyI GAGTC 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 317
MroI TCCGGA 1 cut(s) 736
MseI TTAA 3 cut(s) 434, 720, 879
MspI CCGG 4 cut(s) 371, 386, 737, 923
MspR9I CCNGG 1 cut(s) 371
MunI CAATTG 1 cut(s) 363
MwoI GCNNNNNNNGC 6 cut(s) 506, 515, 524, 751, 1037, 1082
NciI CCSGG 1 cut(s) 371
NcoI CCATGG 1 cut(s) 855
NdeII GATC 8 cut(s) 79, 156, 207, 334, 529, 552, 593, 733
NlaIII CATG 6 cut(s) 319, 341, 559, 799, 859, 938
NlaIV GGNNCC 2 cut(s) 313, 735
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 2 cut(s) 544, 645
NspV TTCGAA 1 cut(s) 1088
PceI AGGCCT 1 cut(s) 716
PfeI GAWTC 5 cut(s) 56, 241, 256, 512, 792
PflMI CCANNNNNTGG 1 cut(s) 1005
PkrI GCNGC 5 cut(s) 403, 406, 502, 826, 886
PleI GAGTC 1 cut(s) 217
PmaCI CACGTG 1 cut(s) 491
PmlI CACGTG 1 cut(s) 491
PpsI GAGTC 1 cut(s) 217
Ppu21I YACGTR 2 cut(s) 324, 491
Psp124BI GAGCTC 1 cut(s) 774
PspCI CACGTG 1 cut(s) 491
PspN4I GGNNCC 2 cut(s) 313, 735
PspPI GGNCC 2 cut(s) 368, 479
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 733
RsaI GTAC 4 cut(s) 273, 635, 946, 1052
RsaNI GTAC 4 cut(s) 272, 634, 945, 1051
SacI GAGCTC 1 cut(s) 774
SalI GTCGAC 1 cut(s) 955
SaqAI TTAA 3 cut(s) 434, 720, 879
SatI GCNGC 5 cut(s) 402, 405, 501, 825, 885
Sau3AI GATC 8 cut(s) 79, 156, 207, 334, 529, 552, 593, 733
Sau96I GGNCC 2 cut(s) 368, 479
ScaI AGTACT 1 cut(s) 1052
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 3 cut(s) 660, 674, 774
SfaNI GCATC 4 cut(s) 388, 831, 1003, 1085
SfcI CTRYAG 2 cut(s) 402, 728
SfuI TTCGAA 1 cut(s) 1088
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 3 cut(s) 245, 681, 773
SmoI CTYRAG 3 cut(s) 245, 681, 773
Sse9I AATT 3 cut(s) 113, 363, 410
SseBI AGGCCT 1 cut(s) 716
SsiI CCGC 6 cut(s) 72, 83, 173, 745, 817, 884
SspI AATATT 1 cut(s) 124
SspMI CTAG 2 cut(s) 191, 590
SstI GAGCTC 1 cut(s) 774
StuI AGGCCT 1 cut(s) 716
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 1 cut(s) 855
TaiI ACGT 2 cut(s) 326, 493
TaqI TCGA 6 cut(s) 8, 68, 97, 159, 956, 1088
TasI AATT 3 cut(s) 113, 363, 410
TatI WGTACW 3 cut(s) 271, 944, 1050
TauI GCSGC 1 cut(s) 887
TfiI GAWTC 5 cut(s) 56, 241, 256, 512, 792
Tru1I TTAA 3 cut(s) 434, 720, 879
Tru9I TTAA 3 cut(s) 434, 720, 879
TscAI CASTG 1 cut(s) 1006
TseFI GTSAC 2 cut(s) 544, 645
TseI GCWGC 4 cut(s) 401, 404, 500, 824
Tsp45I GTSAC 2 cut(s) 544, 645
TspDTI ATGAA 3 cut(s) 17, 784, 1107
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 1 cut(s) 1006
Van91I CCANNNNNTGG 1 cut(s) 1005
VneI GTGCAC 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 956
XspI CTAG 2 cut(s) 191, 590
ZrmI AGTACT 1 cut(s) 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.