Rw0G022970

Protein of unknown function (DUF3752)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01066
OG0001274
Physical Location & Seq
Reverse (-)
8490 .. 11770
3281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022970.1

Sequence Viewer

Length: 1263 bp
ATGAAATCGAAAGACAACGATAAGAAGAAGCAGAGAGCTTATGAGATTGATGATGATTCTGGGTCTTCAAGCGGTGGTGATCCGCAAGCGGTTCTGCGAGACTTGTTGAAGGAATTTCCTAATATTGGGTGCGATTTGAAGCAGCTTTTGCAAGTGATCGATGGGGGCAAAGCCGTTGACATAAATGGACTAGCTCAGAGACCTCTGATCAAGCCTCTCAGGACTCTGTTCCTTTGCTTGAATCTCAAGGAACTGAATCACGGAGGTTTTGTACTGCCTCCAAGTGTTCGTCCGACTTTGGAGGTTGTTGGTTCCATGATTACGTCTTCTTTAGATAATGTTGTTCCTCCTGAGAGAAGGCCAATTGGCCCGGAGAAGCCGTCGCCGGAGATACTTGATGCTGCAGCCAAATTGAGGGAGGCAGAGGCCGAGTTAAGGGAAGCTGAGTTGGAAGAAAAAGATGATGGGGTTTTTATTGGACCTGCTCCACGTGCTGTGGCGGCTGAAGCTGAATCAGCTAACCAGGCTGACCGGTTTGAAGAGGTGACAAGGATCACGGAAGCAGAGGATGATTGCCCCTATGAGATGCTAGGATCAAACCACAATGTGTCCGCTGATAACATCAAGAAAAGGTACTGGAAGTTGTCACTTTTGGTGCACCCTGATAAATGCTCACACCCTCAAGCCAACCAAGCATTTGTGAAGCTGAACAAGGCCTTTAAAGAGCTACAGGATCCGGAGAAGCGGAGAGCGCTGGATGAGAAGATTGAACTCAGGGAGAAGCAGGAGAGATTCATTCTACTGGCAGGTGATGTCAGTGGTGTTAAAGCGGCACGAAAAAGAGATGAGTGGATGACAGAGCTTCCACCAGAGAGGAAACATGGTATGAGTACAAGGCAGTCGACAATGTTTAGCAGGAGTGCTAAACAAGGGCGTGGGGATACCAGTGGATGGACTGATGCTCCTTCTGAAAGAGCTTGGAAAGCTAAGATGGATTATTTACAAGCCTATAATGAGTTTGCATCACTTGCTTCGAATGAGGAGGAGAGGAAGAAGAGTCTAGAGGCAGAGTTGATGGACAATTACAAGAAACATAAACGATCGAAATCATTGCTGCAAAAGCACCAAGAGGAGATTAGAGCGAAGAGAAAATACTCCAAGCAACAGGCAGAGGAGGAAGACTGGATACATAATCCATTTTATTTCCTATCTGATCTCATCACTCCAAACAACAGACAGAAGAAGACTACAGAATATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3752 DnaJ

Protein Analysis

420

Amino Acids

47.78

Weight (kDa)

6.51

Isoelectric Point (pI)

58.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 193 - 253 1.9e-17 DnaJ domain
DUF3752 PF12572 289 - 400 1.8e-13 Protein of unknown function (DUF3752)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 797
Acc36I ACCTGC 2 cut(s) 490, 797
AccB7I CCANNNNNTGG 1 cut(s) 951
AccI GTMKAC 1 cut(s) 902
AccIII TCCGGA 1 cut(s) 736
AciI CCGC 7 cut(s) 72, 83, 89, 500, 612, 745, 830
AclWI GGATC 5 cut(s) 74, 560, 601, 728, 741
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 525
AcvI CACGTG 1 cut(s) 491
AdeI CACNNNGTG 1 cut(s) 607
AfaI GTAC 3 cut(s) 273, 635, 892
AfeI AGCGCT 1 cut(s) 753
AfiI CCNNNNNNNGG 4 cut(s) 125, 414, 435, 951
AgeI ACCGGT 1 cut(s) 531
AgsI TTSAA 6 cut(s) 69, 109, 139, 241, 539, 770
AjnI CCWGG 1 cut(s) 522
Alw21I GWGCWC 1 cut(s) 660
Alw26I GTCTC 2 cut(s) 93, 193
Alw44I GTGCAC 1 cut(s) 656
AlwI GGATC 5 cut(s) 74, 560, 601, 728, 741
Aor13HI TCCGGA 1 cut(s) 736
Aor51HI AGCGCT 1 cut(s) 753
AoxI GGCC 4 cut(s) 359, 367, 426, 714
ApaLI GTGCAC 1 cut(s) 656
ApeKI GCWGC 4 cut(s) 142, 401, 404, 1114
ApoI RAATTY 1 cut(s) 113
AsiGI ACCGGT 1 cut(s) 531
AspLEI GCGC 1 cut(s) 754
AspS9I GGNCC 2 cut(s) 368, 479
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 3 cut(s) 89, 556, 821
AsuII TTCGAA 1 cut(s) 1034
AvaII GGWCC 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 660
BamHI GGATCC 1 cut(s) 733
BarI GAAGNNNNNNTAC 4 cut(s) 1136, 1168, 1170, 1202
BbrPI CACGTG 1 cut(s) 491
BbsI GAAGAC 4 cut(s) 57, 318, 1185, 1250
Bbv12I GWGCWC 1 cut(s) 660
BbvI GCAGC 4 cut(s) 154, 388, 416, 1101
BccI CCATC 5 cut(s) 155, 458, 945, 985, 1069
BceAI ACGGC 2 cut(s) 158, 364
BcgI CGANNNNNNTGC 2 cut(s) 1093, 1127
BciT130I CCWGG 1 cut(s) 524
BciVI GTATCC 2 cut(s) 934, 1179
BclI TGATCA 1 cut(s) 207
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 2 cut(s) 93, 193
BfaI CTAG 3 cut(s) 191, 590, 1061
BfmI CTRYAG 3 cut(s) 402, 728, 1248
BfoI RGCGCY 1 cut(s) 755
BfuAI ACCTGC 2 cut(s) 490, 797
BfuI GTATCC 2 cut(s) 934, 1179
BisI GCNGC 6 cut(s) 143, 402, 405, 501, 831, 1115
BlsI GCNGC 6 cut(s) 144, 403, 406, 502, 832, 1116
Bme1390I CCNGG 2 cut(s) 371, 524
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 2 cut(s) 368, 479
BmiI GGNNCC 2 cut(s) 313, 735
BmrFI CCNGG 2 cut(s) 371, 524
BmsI GCATC 4 cut(s) 388, 576, 949, 1031
BpiI GAAGAC 4 cut(s) 57, 318, 1185, 1250
Bpu14I TTCGAA 1 cut(s) 1034
BpuEI CTTGAG 2 cut(s) 230, 666
BpuMI CCSGG 1 cut(s) 371
Bsa29I ATCGAT 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 491
BsaBI GATNNNNATC 1 cut(s) 1105
BsaI GGTCTC 1 cut(s) 193
BsaWI WCCGGW 2 cut(s) 531, 736
BsaXI ACNNNNNCTCC 6 cut(s) 255, 285, 365, 395, 946, 976
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 414, 435, 951
Bse118I RCCGGY 1 cut(s) 531
Bse1I ACTGG 4 cut(s) 641, 807, 945, 1187
Bse3DI GCAATG 1 cut(s) 1109
Bse8I GATNNNNATC 1 cut(s) 1105
BseAI TCCGGA 1 cut(s) 736
BseBI CCWGG 1 cut(s) 524
BseCI ATCGAT 1 cut(s) 159
BseGI GGATG 4 cut(s) 574, 763, 858, 956
BseJI GATNNNNATC 1 cut(s) 1105
BseLI CCNNNNNNNGG 4 cut(s) 125, 414, 435, 951
BseMI GCAATG 1 cut(s) 1109
BseMII CTCAG 5 cut(s) 209, 232, 342, 435, 787
BseNI ACTGG 4 cut(s) 641, 807, 945, 1187
BseRI GAGGAG 4 cut(s) 1055, 1058, 1145, 1187
BseSI GKGCMC 1 cut(s) 660
BseXI GCAGC 4 cut(s) 154, 388, 416, 1101
Bsh1285I CGRYCG 1 cut(s) 1103
BshFI GGCC 4 cut(s) 361, 369, 428, 716
BshTI ACCGGT 1 cut(s) 531
BshVI ATCGAT 1 cut(s) 159
BsiEI CGRYCG 1 cut(s) 1103
BsiHKAI GWGCWC 1 cut(s) 660
BsiSI CCGG 4 cut(s) 371, 386, 532, 737
BslI CCNNNNNNNGG 4 cut(s) 125, 414, 435, 951
BsmAI GTCTC 2 cut(s) 93, 193
BsnI GGCC 4 cut(s) 361, 369, 428, 716
Bso31I GGTCTC 1 cut(s) 193
Bsp119I TTCGAA 1 cut(s) 1034
Bsp1286I GDGCHC 1 cut(s) 660
Bsp13I TCCGGA 1 cut(s) 736
Bsp143I GATC 8 cut(s) 79, 156, 207, 552, 593, 733, 1100, 1213
BspACI CCGC 7 cut(s) 72, 83, 89, 500, 612, 745, 830
BspANI GGCC 4 cut(s) 361, 369, 428, 716
BspCNI CTCAG 5 cut(s) 208, 231, 343, 436, 786
BspDI ATCGAT 1 cut(s) 159
BspEI TCCGGA 1 cut(s) 736
BspLI GGNNCC 2 cut(s) 313, 735
BspMAI CTGCAG 1 cut(s) 406
BspMI ACCTGC 2 cut(s) 490, 797
BspPI GGATC 5 cut(s) 74, 560, 601, 728, 741
BspT104I TTCGAA 1 cut(s) 1034
BspTNI GGTCTC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 1109
BsrFI RCCGGY 1 cut(s) 531
BsrI ACTGG 4 cut(s) 641, 807, 945, 1187
BssAI RCCGGY 1 cut(s) 531
BssMI GATC 8 cut(s) 79, 156, 207, 552, 593, 733, 1100, 1213
Bst2UI CCWGG 1 cut(s) 524
Bst6I CTCTTC 3 cut(s) 534, 1049, 1139
BstAPI GCANNNNNTGC 2 cut(s) 148, 1028
BstBAI YACGTR 1 cut(s) 491
BstBI TTCGAA 1 cut(s) 1034
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 6 cut(s) 195, 218, 351, 444, 773, 987
BstF5I GGATG 4 cut(s) 574, 763, 858, 956
BstH2I RGCGCY 1 cut(s) 755
BstHHI GCGC 1 cut(s) 754
BstKTI GATC 8 cut(s) 82, 159, 210, 555, 596, 736, 1103, 1216
BstMAI GTCTC 2 cut(s) 93, 193
BstMBI GATC 8 cut(s) 79, 156, 207, 552, 593, 733, 1100, 1213
BstMCI CGRYCG 1 cut(s) 1103
BstNI CCWGG 1 cut(s) 524
BstSCI CCNGG 2 cut(s) 369, 522
BstSFI CTRYAG 3 cut(s) 402, 728, 1248
BstSLI GKGCMC 1 cut(s) 660
BstV1I GCAGC 4 cut(s) 154, 388, 416, 1101
BstV2I GAAGAC 4 cut(s) 57, 318, 1185, 1250
BstX2I RGATCY 1 cut(s) 733
BstYI RGATCY 1 cut(s) 733
Bsu15I ATCGAT 1 cut(s) 159
BsuI GTATCC 2 cut(s) 934, 1179
BsuRI GGCC 4 cut(s) 361, 369, 428, 716
BsuTUI ATCGAT 1 cut(s) 159
BtsCI GGATG 4 cut(s) 574, 763, 858, 956
BtsIMutI CAGTG 2 cut(s) 823, 952
BveI ACCTGC 2 cut(s) 490, 797
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 1 cut(s) 754
Cfr10I RCCGGY 1 cut(s) 531
Cfr13I GGNCC 2 cut(s) 368, 479
ClaI ATCGAT 1 cut(s) 159
Csp6I GTAC 3 cut(s) 272, 634, 891
CspAI ACCGGT 1 cut(s) 531
CviAII CATG 2 cut(s) 316, 881
CviQI GTAC 3 cut(s) 272, 634, 891
DdeI CTNAG 6 cut(s) 195, 218, 351, 444, 773, 987
DpnI GATC 8 cut(s) 81, 158, 209, 554, 595, 735, 1102, 1215
DpnII GATC 8 cut(s) 79, 156, 207, 552, 593, 733, 1100, 1213
DraI TTTAAA 1 cut(s) 721
DraIII CACNNNGTG 1 cut(s) 607
Eam1104I CTCTTC 3 cut(s) 534, 1049, 1139
EarI CTCTTC 3 cut(s) 534, 1049, 1139
Eco147I AGGCCT 1 cut(s) 716
Eco31I GGTCTC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 479
Eco47III AGCGCT 1 cut(s) 753
Eco57I CTGAAG 1 cut(s) 525
Eco72I CACGTG 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 522
FaeI CATG 2 cut(s) 319, 884
FaiI YATR 9 cut(s) 42, 182, 317, 582, 882, 887, 1011, 1095, 1191
FatI CATG 2 cut(s) 315, 880
FbaI TGATCA 1 cut(s) 207
FblI GTMKAC 1 cut(s) 902
Fnu4HI GCNGC 6 cut(s) 143, 402, 405, 501, 831, 1115
FokI GGATG 4 cut(s) 581, 770, 865, 963
Fsp4HI GCNGC 6 cut(s) 143, 402, 405, 501, 831, 1115
FspBI CTAG 3 cut(s) 191, 590, 1061
GlaI GCGC 1 cut(s) 753
GluI GCNGC 6 cut(s) 143, 402, 405, 501, 831, 1115
HaeII RGCGCY 1 cut(s) 755
HaeIII GGCC 4 cut(s) 361, 369, 428, 716
HapII CCGG 4 cut(s) 371, 386, 532, 737
HhaI GCGC 1 cut(s) 754
Hin1II CATG 2 cut(s) 319, 884
Hin6I GCGC 1 cut(s) 752
HinP1I GCGC 1 cut(s) 752
HincII GTYRAC 2 cut(s) 178, 903
HindII GTYRAC 2 cut(s) 178, 903
HinfI GANTC 7 cut(s) 56, 223, 241, 256, 512, 792, 1057
HpaII CCGG 4 cut(s) 371, 386, 532, 737
HphI GGTGA 3 cut(s) 89, 556, 821
Hpy166II GTNNAC 3 cut(s) 178, 658, 903
Hpy188I TCNGA 5 cut(s) 198, 207, 294, 970, 1213
Hpy188III TCNNGA 5 cut(s) 220, 350, 625, 737, 1061
Hpy8I GTNNAC 3 cut(s) 178, 658, 903
Hpy99I CGWCG 1 cut(s) 385
HpyAV CCTTC 3 cut(s) 103, 351, 975
HpyCH4IV ACGT 2 cut(s) 323, 490
HpyCH4V TGCA 5 cut(s) 151, 404, 658, 1022, 1117
HpyF3I CTNAG 6 cut(s) 195, 218, 351, 444, 773, 987
HpySE526I ACGT 2 cut(s) 323, 490
Hsp92II CATG 2 cut(s) 319, 884
HspAI GCGC 1 cut(s) 752
Kpn2I TCCGGA 1 cut(s) 736
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 8 cut(s) 79, 156, 207, 552, 593, 733, 1100, 1213
LmnI GCTCC 2 cut(s) 490, 967
Lsp1109I GCAGC 4 cut(s) 154, 388, 416, 1101
LweI GCATC 4 cut(s) 388, 576, 949, 1031
MaeI CTAG 3 cut(s) 191, 590, 1061
MaeII ACGT 2 cut(s) 323, 490
MaeIII GTNAC 2 cut(s) 544, 645
MalI GATC 8 cut(s) 81, 158, 209, 554, 595, 735, 1102, 1215
MboI GATC 8 cut(s) 79, 156, 207, 552, 593, 733, 1100, 1213
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 1 cut(s) 733
MhlI GDGCHC 1 cut(s) 660
MluCI AATT 4 cut(s) 113, 363, 410, 1081
MlyI GAGTC 2 cut(s) 217, 1066
MmeI TCCRAC 2 cut(s) 317, 429
MroI TCCGGA 1 cut(s) 736
MseI TTAA 3 cut(s) 434, 720, 825
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 4 cut(s) 371, 386, 532, 737
MspR9I CCNGG 2 cut(s) 371, 524
MunI CAATTG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 524
NciI CCSGG 1 cut(s) 371
NdeII GATC 8 cut(s) 79, 156, 207, 552, 593, 733, 1100, 1213
NlaIII CATG 2 cut(s) 319, 884
NlaIV GGNNCC 2 cut(s) 313, 735
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 2 cut(s) 544, 645
NspV TTCGAA 1 cut(s) 1034
PaqCI CACCTGC 1 cut(s) 797
PceI AGGCCT 1 cut(s) 716
PfeI GAWTC 5 cut(s) 56, 241, 256, 512, 792
PflMI CCANNNNNTGG 1 cut(s) 951
PinAI ACCGGT 1 cut(s) 531
PkrI GCNGC 6 cut(s) 144, 403, 406, 502, 832, 1116
Ple19I CGATCG 1 cut(s) 1103
PleI GAGTC 2 cut(s) 217, 1065
PmaCI CACGTG 1 cut(s) 491
PmlI CACGTG 1 cut(s) 491
PpsI GAGTC 2 cut(s) 217, 1065
Ppu21I YACGTR 1 cut(s) 491
Psp6I CCWGG 1 cut(s) 522
PspCI CACGTG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 2 cut(s) 313, 735
PspPI GGNCC 2 cut(s) 368, 479
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 733
PvuI CGATCG 1 cut(s) 1103
RsaI GTAC 3 cut(s) 273, 635, 892
RsaNI GTAC 3 cut(s) 272, 634, 891
SalI GTCGAC 1 cut(s) 901
SaqAI TTAA 3 cut(s) 434, 720, 825
SatI GCNGC 6 cut(s) 143, 402, 405, 501, 831, 1115
Sau3AI GATC 8 cut(s) 79, 156, 207, 552, 593, 733, 1100, 1213
Sau96I GGNCC 2 cut(s) 368, 479
SchI GAGTC 2 cut(s) 217, 1066
ScrFI CCNGG 2 cut(s) 371, 524
SduI GDGCHC 1 cut(s) 660
SfaNI GCATC 4 cut(s) 388, 576, 949, 1031
SfcI CTRYAG 3 cut(s) 402, 728, 1248
SfuI TTCGAA 1 cut(s) 1034
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 2 cut(s) 245, 681
SmoI CTYRAG 2 cut(s) 245, 681
Sse9I AATT 4 cut(s) 113, 363, 410, 1081
SseBI AGGCCT 1 cut(s) 716
SsiI CCGC 7 cut(s) 72, 83, 89, 500, 612, 745, 830
SspI AATATT 2 cut(s) 124, 1256
SspMI CTAG 3 cut(s) 191, 590, 1061
StuI AGGCCT 1 cut(s) 716
StyD4I CCNGG 2 cut(s) 369, 522
TaiI ACGT 2 cut(s) 326, 493
TaqI TCGA 5 cut(s) 8, 159, 902, 1034, 1103
TasI AATT 4 cut(s) 113, 363, 410, 1081
TatI WGTACW 2 cut(s) 271, 890
TauI GCSGC 2 cut(s) 503, 833
TfiI GAWTC 5 cut(s) 56, 241, 256, 512, 792
Tru1I TTAA 3 cut(s) 434, 720, 825
Tru9I TTAA 3 cut(s) 434, 720, 825
TscAI CASTG 2 cut(s) 823, 952
TseFI GTSAC 2 cut(s) 544, 645
TseI GCWGC 4 cut(s) 142, 401, 404, 1114
Tsp45I GTSAC 2 cut(s) 544, 645
TspDTI ATGAA 2 cut(s) 17, 784
TspGWI ACGGA 2 cut(s) 276, 572
TspRI CASTG 2 cut(s) 823, 952
Van91I CCANNNNNTGG 1 cut(s) 951
VneI GTGCAC 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 1 cut(s) 113
XbaI TCTAGA 1 cut(s) 1060
XmiI GTMKAC 1 cut(s) 902
XspI CTAG 3 cut(s) 191, 590, 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.