Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001274

Physical Location & Seq

Genomic Coordinates Forward (+)

37402164 .. 37402622

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44932.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCCGACGCCAGAGCTACTTGCTGCTGCAGCCAAATTGAGAGAGGCAGAGGCCGAGTTGAGGGAAGCTGAGTTGGAAGAAAAAGATGATGGTGTTTTAATAGGGCCTGCACCGCATGTTGCGGCTGCTGAAGTTGAATCAGCTAACCAGGGTGATCGTTTCGAAGAGGTGACAAGGATCATGGAAGCAGAGGATGATAGCATGTATGATATATTGGGAGCAAACCACAATGTGTCTGCTGATAACATCAAGAAAAGGTACCGGAAGTTGTCGCTTTTGGTGCACCCTGATAAATGCTCTCACCCTCAAGCTAGCCAAGCATTTGTAAAGCTGAACAAGGCGTTTAAGGAGTTACAGGATCCGCAGAAGCGGAGAGCGCTGGATGAGAAGATTGAGGTTAAGGAGAAGCAGGAAAGATTCAATGTGGAGTTGACGGCAATGCGGGAAGCTGCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3752 DnaJ

Protein Analysis

153

Amino Acids

17.12

Weight (kDa)

5.12

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	68 - 128	7.8e-20	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65280 AT1G65280
fragaria_vesca	FvH4_3g44892 FvH4_3g44892 FvH4_3g44892 FvH4_3g44931 FvH4_3g44932 FvH4_3g44960 FvH4_3g44966 FvH4_4g06470
malus_domestica	MD04G1003500.v1.1
prunus_persica	Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1
pyrus_communis	pycom04g00360
rosa_chinensis	RchiOBHm_Chr4g0398261 RchiOBHm_Chr5g0081671 RchiOBHm_Chr5g0082081 RchiOBHm_Chr5g0082701
rosa_laevigata	RLG00000036957 RLG00000036962 RLG00000036979
rosa_multiflora	Rmu_co8467303.1_g000001 Rmu_sc0000303.1_g000009 Rmu_sc0001687.1_g000002 Rmu_sc0002176.1_g000036 Rmu_sc0002723.1_g000006 Rmu_sc0002723.1_g000051 Rmu_sc0002723.1_g000052 Rmu_sc0004094.1_g000006 Rmu_sc0004835.1_g000037 Rmu_sc0012399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343240
rosa_rugosa	Rorug04G0007200 Rorug04G0007300 Rorug05G0477600
rosa_samantha	Rh4AG084700 Rh4BG082100 Rh4CG092100 Rh4DG077200 Rh5AG529100 Rh5BG554300 Rh5BG554800 Rh5BG555700 Rh5CG577200 Rh5CG577700 Rh5CG578400 Rh5DG563900 Rh5DG564100 Rh5DG565000 Rh5DG565100
rosa_wichuraiana	Rw0G022970 Rw4G007040 Rw5G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	258
AciI	CCGC	5 cut(s)	113, 122, 362, 370, 442
AclWI	GGATC	3 cut(s)	185, 353, 366
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	8
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	1 cut(s)	260
AfeI	AGCGCT	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	137, 421
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	6 cut(s)	16, 68, 143, 311, 331, 449
AluI	AGCT	6 cut(s)	16, 68, 143, 311, 331, 449
Alw21I	GWGCWC	1 cut(s)	285
Alw44I	GTGCAC	1 cut(s)	281
AlwI	GGATC	3 cut(s)	185, 353, 366
Aor51HI	AGCGCT	1 cut(s)	378
AoxI	GGCC	2 cut(s)	51, 104
ApaLI	GTGCAC	1 cut(s)	281
ApeKI	GCWGC	5 cut(s)	23, 26, 29, 125, 449
Asp718I	GGTACC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	3 cut(s)	164, 181, 293
AsuII	TTCGAA	1 cut(s)	162
AsuNHI	GCTAGC	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	5 cut(s)	10, 13, 41, 112, 436
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	1 cut(s)	149
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	380
BisI	GCNGC	6 cut(s)	24, 27, 30, 123, 126, 450
BlsI	GCNGC	6 cut(s)	25, 28, 31, 124, 127, 451
Bme1390I	CCNGG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	260, 360
BmrFI	CCNGG	1 cut(s)	149
BmtI	GCTAGC	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse3DI	GCAATG	2 cut(s)	444, 459
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	199, 388
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMI	GCAATG	2 cut(s)	444, 459
BseMII	CTCAG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	5 cut(s)	10, 13, 41, 112, 436
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	53, 106
BshNI	GGYRCC	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	60
BsnI	GGCC	2 cut(s)	53, 106
Bsp119I	TTCGAA	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	154, 177, 358
BspACI	CCGC	5 cut(s)	113, 122, 362, 370, 442
BspANI	GGCC	2 cut(s)	53, 106
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	260, 360
BspMAI	CTGCAG	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	315
BspPI	GGATC	3 cut(s)	185, 353, 366
BspT104I	TTCGAA	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	258
BsrDI	GCAATG	2 cut(s)	444, 459
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	3 cut(s)	154, 177, 358
BssNI	GRCGYC	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	8
BstBI	TTCGAA	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	108, 313
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	199, 388
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	3 cut(s)	157, 180, 361
BstMBI	GATC	3 cut(s)	154, 177, 358
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 112, 280, 317, 376
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	2 cut(s)	119, 205
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	5 cut(s)	10, 13, 41, 112, 436
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	53, 106
BtsCI	GGATG	2 cut(s)	199, 388
Cac8I	GCNNGC	2 cut(s)	108, 313
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	104
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	3 cut(s)	116, 181, 202
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	3 cut(s)	156, 179, 360
DpnII	GATC	3 cut(s)	154, 177, 358
DraIII	CACNNNGTG	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco47III	AGCGCT	1 cut(s)	378
Eco57I	CTGAAG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	147
FaeI	CATG	3 cut(s)	119, 184, 205
FaiI	YATR	5 cut(s)	117, 182, 203, 207, 212
FatI	CATG	3 cut(s)	115, 180, 201
FauI	CCCGC	1 cut(s)	435
Fnu4HI	GCNGC	6 cut(s)	24, 27, 30, 123, 126, 450
FokI	GGATG	2 cut(s)	206, 395
Fsp4HI	GCNGC	6 cut(s)	24, 27, 30, 123, 126, 450
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	6 cut(s)	24, 27, 30, 123, 126, 450
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	53, 106
HapII	CCGG	1 cut(s)	262
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	379
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	3 cut(s)	119, 184, 205
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	2 cut(s)	137, 417
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	3 cut(s)	164, 181, 293
Hpy166II	GTNNAC	2 cut(s)	283, 432
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	2 cut(s)	283, 432
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4V	TGCA	4 cut(s)	29, 110, 283, 452
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 112, 280, 317, 376
HpyF3I	CTNAG	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	3 cut(s)	119, 184, 205
HspAI	GCGC	1 cut(s)	377
KpnI	GGTACC	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	154, 177, 358
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	9 cut(s)	24, 120, 134, 161, 275, 300, 341, 365, 395
Lsp1109I	GCAGC	5 cut(s)	10, 13, 41, 112, 436
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	169, 351
MalI	GATC	3 cut(s)	156, 179, 360
MboI	GATC	3 cut(s)	154, 177, 358
MboII	GAAGA	3 cut(s)	89, 176, 400
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	7 cut(s)	37, 43, 54, 160, 184, 315, 388
MseI	TTAA	3 cut(s)	98, 345, 399
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	5 cut(s)	29, 112, 280, 317, 376
NdeII	GATC	3 cut(s)	154, 177, 358
NheI	GCTAGC	1 cut(s)	311
NlaIII	CATG	3 cut(s)	119, 184, 205
NlaIV	GGNNCC	2 cut(s)	260, 360
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	2 cut(s)	119, 205
NspV	TTCGAA	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	137, 417
PkrI	GCNGC	6 cut(s)	25, 28, 31, 124, 127, 451
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	260, 360
PspPI	GGNCC	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	98, 345, 399
SatI	GCNGC	6 cut(s)	24, 27, 30, 123, 126, 450
Sau3AI	GATC	3 cut(s)	154, 177, 358
Sau96I	GGNCC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	9 cut(s)	18, 70, 145, 171, 260, 313, 333, 399, 451
SfcI	CTRYAG	1 cut(s)	27
SfuI	TTCGAA	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	1 cut(s)	35
SsiI	CCGC	5 cut(s)	113, 122, 362, 370, 442
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	147
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	35
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	137, 417
Tru1I	TTAA	3 cut(s)	98, 345, 399
Tru9I	TTAA	3 cut(s)	98, 345, 399
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	5 cut(s)	23, 26, 29, 125, 449
Tsp45I	GTSAC	1 cut(s)	169
VneI	GTGCAC	1 cut(s)	281
XceI	RCATGY	2 cut(s)	119, 205
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.