RLG00000036962

Protein of unknown function (DUF3752)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001274
Physical Location & Seq
Forward (+)
86958708 .. 86965346
6639 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036962

Sequence Viewer

Length: 1419 bp
ATGAAACATTTAGACTACACGGGGAGCCATTCTGTCCGTTCATCAATATCCTCTCCTTCAAGCTCCAACGATTCTAAACGCTTTTCCAAGACGCGTCATCTCCACCGTCCCGATGACACTTCCAAAAGAGACGAACAAAGGCAAAGGGAGAAGGCTGAGAAACAGAGGAGCAAAAGTGAGGCAAGGCGAATGAAATCAAAAGACAATGATAAGAAGAAGCAGAGAGCTTATGAGATTGATGATGATTCTGGGTCTTTGAGCGGTGGTGATCCGCAAGCGGTTCTACGAGACTTGTTGAAGGAATTTCCTAATATTGGGTGTGATTTGAAGCAGCTTTTGCAAGTGATCGATTGGGGCAAAGCGGTTGACATAAATGGACTAGCTCAGAAACCTCTGATCAAGCCTCTCAGGACTCTGTTCCTTTGCTTGAATCTCAAGGAACTGAATCACGGAGGTTTTGTACTGCCTCCAAATGTTCGTCCAACTTTGGAGGTTGTTGGTTCCATGATTACGTCTTCTTTAGATAATGTTGTTCCTCCTGAGAGAAGGCCAATTGGCCTAGAGAAGCCGTCACCGGAGATACTTGATGCTGCAACCAAATTGAGAGAGGCAGAGGCTGAGTTAAGGGAAGCTGAGTTGGAGGAAAAAGATGATGGGATTTTTATAGGACCTGCACCACGTGTTGTGGCTGCTGAAGCTGAATCAACTAACCAAGCTGATCGGTTTGAAGAGGTGACAAGGATCATGGAAGCAGAGGATGATAGCTCCTATGAGATACTAGGAGCAAGCCACTATGTGTTTGCTGATAACATCAAGAAAAGGTACTGGAAGTTGTCACTTTTGGATCCGGAGAAGCGGAGAGCTCTGGATGAGAAGATTGAGCTTAGGGAGAAGCAGGAGAGATTCATTGTTGAGTTGAGGGCAATGCGGGAAGCAGCAATGTGGAGAAAGATGCAGGGGATTTCCATGGAGGGTGATAAGGAGCTACTGGCAGGTGATGTGACTGGTGTTAAAGCGGCACGAAAAAGAGATGAGTGGATGACAGAGCTTCCACCGGAGAGGAAACATTGTATGGCTAAGATGGAGTACTTACAAGCCTATAATGAGTTTGCATCACTTGCCTTGAATGAGGAGGAGAGGAAGAGGAGTTTAGAGGCAGAGTTGATGGACAATTACAAAAAAGATAAACGATCGAAATCATTGCTGCAAAAGCACCAAGAGGAGACTAGAGCAAAGAGAAAATACTCCAAGCAACAGGCAGAGGAGGAAGACTGGGTGGGGACACATCCGTGGAGGCCTTGGGACCGTGAGAAAGATTTGGCAGGTGGTAGACAACGTGTGAAATTGGATTCAAAAAACATGACTCGAGGTTTGTCATCTCGGTTTTCTGGAGGATCATACCAGAGGAACTTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3752 DnaJ

Protein Analysis

473

Amino Acids

54.41

Weight (kDa)

8.75

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3752 PF12572 344 - 463 9.2e-16 Protein of unknown function (DUF3752)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 983, 1313
Acc36I ACCTGC 3 cut(s) 679, 983, 1313
AccBSI CCGCTC 1 cut(s) 261
AccI GTMKAC 1 cut(s) 1330
AccII CGCG 1 cut(s) 94
AccIII TCCGGA 1 cut(s) 847
AciI CCGC 7 cut(s) 261, 272, 278, 362, 856, 928, 1016
AclWI GGATC 5 cut(s) 263, 749, 839, 852, 1402
AcsI RAATTY 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 714
AcvI CACGTG 1 cut(s) 680
AdeI CACNNNGTG 2 cut(s) 680, 796
AfaI GTAC 3 cut(s) 462, 824, 1088
AfiI CCNNNNNNNGG 1 cut(s) 314
AflIII ACRYGT 3 cut(s) 92, 679, 1336
AgsI TTSAA 7 cut(s) 60, 298, 328, 430, 728, 1126, 1353
AleI CACNNNNGTG 1 cut(s) 1288
Alw21I GWGCWC 1 cut(s) 865
Alw26I GTCTC 3 cut(s) 123, 282, 1217
AlwI GGATC 5 cut(s) 263, 749, 839, 852, 1402
AlwNI CAGNNNCTG 1 cut(s) 617
Ama87I CYCGRG 1 cut(s) 1365
Aor13HI TCCGGA 1 cut(s) 847
AoxI GGCC 3 cut(s) 548, 556, 1295
ApeKI GCWGC 5 cut(s) 331, 590, 689, 935, 1204
ApoI RAATTY 1 cut(s) 302
ArsI GACNNNNNNTTYG 2 cut(s) 1354, 1386
AspS9I GGNCC 2 cut(s) 668, 1303
AsuHPI GGTGA 5 cut(s) 278, 564, 745, 986, 1007
AvaI CYCGRG 1 cut(s) 1365
AvaII GGWCC 2 cut(s) 668, 1303
BamHI GGATCC 1 cut(s) 844
BanII GRGCYC 1 cut(s) 865
BbrPI CACGTG 1 cut(s) 680
BbsI GAAGAC 2 cut(s) 507, 1275
Bbv12I GWGCWC 1 cut(s) 865
BbvI GCAGC 5 cut(s) 343, 577, 676, 947, 1191
BccI CCATC 3 cut(s) 647, 1075, 1159
BceAI ACGGC 1 cut(s) 553
BcgI CGANNNNNNTGC 2 cut(s) 1183, 1217
BclI TGATCA 1 cut(s) 396
BcoDI GTCTC 3 cut(s) 123, 282, 1217
BfaI CTAG 4 cut(s) 380, 560, 779, 1227
BfuAI ACCTGC 3 cut(s) 679, 983, 1313
BisI GCNGC 6 cut(s) 332, 591, 690, 936, 1017, 1205
BlsI GCNGC 6 cut(s) 333, 592, 691, 937, 1018, 1206
BmcAI AGTACT 1 cut(s) 1088
Bme18I GGWCC 2 cut(s) 668, 1303
BmeT110I CYCGRG 1 cut(s) 1365
BmgT120I GGNCC 2 cut(s) 668, 1303
BmiI GGNNCC 4 cut(s) 26, 502, 846, 1304
BmrI ACTGGG 1 cut(s) 1282
BmsI GCATC 3 cut(s) 577, 942, 1121
BmuI ACTGGG 1 cut(s) 1282
BpiI GAAGAC 2 cut(s) 507, 1275
BpmI CTGGAG 1 cut(s) 1410
Bpu10I CCTNAGC 1 cut(s) 884
BpuEI CTTGAG 1 cut(s) 419
Bsa29I ATCGAT 1 cut(s) 348
BsaAI YACGTR 1 cut(s) 680
BsaBI GATNNNNATC 1 cut(s) 1195
BsaJI CCNNGG 3 cut(s) 966, 1289, 1298
BsaWI WCCGGW 3 cut(s) 574, 847, 1054
BsaXI ACNNNNNCTCC 4 cut(s) 160, 190, 444, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 4 cut(s) 830, 993, 1009, 1277
Bse3DI GCAATG 3 cut(s) 930, 945, 1199
Bse8I GATNNNNATC 1 cut(s) 1195
BseAI TCCGGA 1 cut(s) 847
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 966, 1289, 1298
BseGI GGATG 4 cut(s) 763, 874, 1044, 1285
BseJI GATNNNNATC 1 cut(s) 1195
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 3 cut(s) 930, 945, 1199
BseMII CTCAG 6 cut(s) 147, 398, 421, 531, 609, 624
BseNI ACTGG 4 cut(s) 830, 993, 1009, 1277
BseRI GAGGAG 6 cut(s) 181, 1145, 1148, 1159, 1235, 1277
BseXI GCAGC 5 cut(s) 343, 577, 676, 947, 1191
BsgI GTGCAG 1 cut(s) 657
Bsh1236I CGCG 1 cut(s) 94
Bsh1285I CGRYCG 1 cut(s) 1193
BshFI GGCC 3 cut(s) 550, 558, 1297
BshVI ATCGAT 1 cut(s) 348
BsiEI CGRYCG 1 cut(s) 1193
BsiHKAI GWGCWC 1 cut(s) 865
BsiHKCI CYCGRG 1 cut(s) 1365
BsiSI CCGG 3 cut(s) 575, 848, 1055
BslFI GGGAC 3 cut(s) 93, 1294, 1316
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 3 cut(s) 123, 282, 1217
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 3 cut(s) 93, 1294, 1316
BsnI GGCC 3 cut(s) 550, 558, 1297
BsoBI CYCGRG 1 cut(s) 1365
Bsp1286I GDGCHC 1 cut(s) 865
Bsp13I TCCGGA 1 cut(s) 847
Bsp143I GATC 8 cut(s) 268, 345, 396, 718, 741, 844, 1190, 1394
Bsp19I CCATGG 1 cut(s) 966
BspACI CCGC 7 cut(s) 261, 272, 278, 362, 856, 928, 1016
BspANI GGCC 3 cut(s) 550, 558, 1297
BspCNI CTCAG 6 cut(s) 148, 397, 420, 532, 610, 625
BspDI ATCGAT 1 cut(s) 348
BspEI TCCGGA 1 cut(s) 847
BspFNI CGCG 1 cut(s) 94
BspLI GGNNCC 4 cut(s) 26, 502, 846, 1304
BspMI ACCTGC 3 cut(s) 679, 983, 1313
BspPI GGATC 5 cut(s) 263, 749, 839, 852, 1402
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 3 cut(s) 930, 945, 1199
BsrI ACTGG 4 cut(s) 830, 993, 1009, 1277
BssECI CCNNGG 3 cut(s) 966, 1289, 1298
BssMI GATC 8 cut(s) 268, 345, 396, 718, 741, 844, 1190, 1394
BssT1I CCWWGG 2 cut(s) 966, 1298
Bst4CI ACNGT 2 cut(s) 107, 1307
Bst6I CTCTTC 2 cut(s) 723, 1136
BstAPI GCANNNNNTGC 2 cut(s) 337, 1118
BstBAI YACGTR 1 cut(s) 680
BstC8I GCNNGC 2 cut(s) 276, 787
BstDEI CTNAG 8 cut(s) 156, 384, 407, 540, 618, 633, 884, 1077
BstDSI CCRYGG 2 cut(s) 966, 1289
BstF5I GGATG 4 cut(s) 763, 874, 1044, 1285
BstFNI CGCG 1 cut(s) 94
BstKTI GATC 8 cut(s) 271, 348, 399, 721, 744, 847, 1193, 1397
BstMAI GTCTC 3 cut(s) 123, 282, 1217
BstMBI GATC 8 cut(s) 268, 345, 396, 718, 741, 844, 1190, 1394
BstMCI CGRYCG 1 cut(s) 1193
BstMWI GCNNNNNNNGC 4 cut(s) 337, 695, 1118, 1210
BstUI CGCG 1 cut(s) 94
BstV1I GCAGC 5 cut(s) 343, 577, 676, 947, 1191
BstV2I GAAGAC 2 cut(s) 507, 1275
BstX2I RGATCY 1 cut(s) 844
BstYI RGATCY 1 cut(s) 844
Bsu15I ATCGAT 1 cut(s) 348
BsuRI GGCC 3 cut(s) 550, 558, 1297
BsuTUI ATCGAT 1 cut(s) 348
BtgI CCRYGG 2 cut(s) 966, 1289
BtsCI GGATG 4 cut(s) 763, 874, 1044, 1285
BveI ACCTGC 3 cut(s) 679, 983, 1313
Cac8I GCNNGC 2 cut(s) 276, 787
CaiI CAGNNNCTG 1 cut(s) 617
Cfr13I GGNCC 2 cut(s) 668, 1303
ClaI ATCGAT 1 cut(s) 348
CseI GACGC 2 cut(s) 83, 100
Csp6I GTAC 3 cut(s) 461, 823, 1087
CviAII CATG 4 cut(s) 505, 745, 967, 1360
CviQI GTAC 3 cut(s) 461, 823, 1087
DdeI CTNAG 8 cut(s) 156, 384, 407, 540, 618, 633, 884, 1077
DpnI GATC 8 cut(s) 270, 347, 398, 720, 743, 846, 1192, 1396
DpnII GATC 8 cut(s) 268, 345, 396, 718, 741, 844, 1190, 1394
DraIII CACNNNGTG 2 cut(s) 680, 796
Eam1104I CTCTTC 2 cut(s) 723, 1136
EarI CTCTTC 2 cut(s) 723, 1136
Ecl136II GAGCTC 1 cut(s) 863
Eco130I CCWWGG 2 cut(s) 966, 1298
Eco147I AGGCCT 1 cut(s) 1297
Eco24I GRGCYC 1 cut(s) 865
Eco47I GGWCC 2 cut(s) 668, 1303
Eco53kI GAGCTC 1 cut(s) 863
Eco57I CTGAAG 1 cut(s) 714
Eco72I CACGTG 1 cut(s) 680
Eco88I CYCGRG 1 cut(s) 1365
EcoICRI GAGCTC 1 cut(s) 863
EcoO109I RGGNCCY 1 cut(s) 668
EcoT14I CCWWGG 2 cut(s) 966, 1298
EcoT38I GRGCYC 1 cut(s) 865
ErhI CCWWGG 2 cut(s) 966, 1298
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 4 cut(s) 508, 748, 970, 1363
FaqI GGGAC 3 cut(s) 93, 1294, 1316
FatI CATG 4 cut(s) 504, 744, 966, 1359
FauI CCCGC 1 cut(s) 921
FbaI TGATCA 1 cut(s) 396
FblI GTMKAC 1 cut(s) 1330
Fnu4HI GCNGC 6 cut(s) 332, 591, 690, 936, 1017, 1205
FokI GGATG 4 cut(s) 770, 881, 1051, 1272
FriOI GRGCYC 1 cut(s) 865
Fsp4HI GCNGC 6 cut(s) 332, 591, 690, 936, 1017, 1205
FspBI CTAG 4 cut(s) 380, 560, 779, 1227
GluI GCNGC 6 cut(s) 332, 591, 690, 936, 1017, 1205
GsuI CTGGAG 1 cut(s) 1410
HaeIII GGCC 3 cut(s) 550, 558, 1297
HapII CCGG 3 cut(s) 575, 848, 1055
HgaI GACGC 2 cut(s) 83, 100
Hin1II CATG 4 cut(s) 508, 748, 970, 1363
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 9 cut(s) 71, 245, 412, 430, 445, 701, 903, 1349, 1363
HpaII CCGG 3 cut(s) 575, 848, 1055
HphI GGTGA 5 cut(s) 278, 564, 745, 986, 1007
Hpy166II GTNNAC 2 cut(s) 367, 1331
Hpy188I TCNGA 2 cut(s) 387, 396
Hpy188III TCNNGA 7 cut(s) 110, 409, 539, 814, 848, 866, 1389
Hpy8I GTNNAC 2 cut(s) 367, 1331
HpyAV CCTTC 4 cut(s) 66, 145, 292, 540
HpyCH4III ACNGT 2 cut(s) 107, 1307
HpyCH4IV ACGT 3 cut(s) 512, 679, 1336
HpyCH4V TGCA 6 cut(s) 340, 593, 674, 955, 1112, 1207
HpyF10VI GCNNNNNNNGC 4 cut(s) 337, 695, 1118, 1210
HpyF3I CTNAG 8 cut(s) 156, 384, 407, 540, 618, 633, 884, 1077
HpySE526I ACGT 3 cut(s) 512, 679, 1336
Hsp92II CATG 4 cut(s) 508, 748, 970, 1363
Kpn2I TCCGGA 1 cut(s) 847
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 8 cut(s) 268, 345, 396, 718, 741, 844, 1190, 1394
LmnI GCTCC 6 cut(s) 24, 68, 168, 770, 782, 982
Lsp1109I GCAGC 5 cut(s) 343, 577, 676, 947, 1191
LweI GCATC 3 cut(s) 577, 942, 1121
MaeI CTAG 4 cut(s) 380, 560, 779, 1227
MaeII ACGT 3 cut(s) 512, 679, 1336
MaeIII GTNAC 4 cut(s) 570, 733, 834, 1000
MalI GATC 8 cut(s) 270, 347, 398, 720, 743, 846, 1192, 1396
MbiI CCGCTC 1 cut(s) 261
MboI GATC 8 cut(s) 268, 345, 396, 718, 741, 844, 1190, 1394
MboII GAAGA 6 cut(s) 226, 507, 740, 886, 1153, 1280
MfeI CAATTG 1 cut(s) 552
MflI RGATCY 1 cut(s) 844
MhlI GDGCHC 1 cut(s) 865
MluCI AATT 5 cut(s) 302, 552, 599, 1171, 1343
MluI ACGCGT 1 cut(s) 92
MlyI GAGTC 2 cut(s) 406, 1357
MmeI TCCRAC 3 cut(s) 90, 506, 618
MroI TCCGGA 1 cut(s) 847
MseI TTAA 2 cut(s) 623, 1011
MslI CAYNNNNRTG 1 cut(s) 1288
MspI CCGG 3 cut(s) 575, 848, 1055
MunI CAATTG 1 cut(s) 552
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 4 cut(s) 337, 695, 1118, 1210
NcoI CCATGG 1 cut(s) 966
NdeII GATC 8 cut(s) 268, 345, 396, 718, 741, 844, 1190, 1394
NlaIII CATG 4 cut(s) 508, 748, 970, 1363
NlaIV GGNNCC 4 cut(s) 26, 502, 846, 1304
NmuCI GTSAC 4 cut(s) 570, 733, 834, 1000
OliI CACNNNNGTG 1 cut(s) 1288
PaeR7I CTCGAG 1 cut(s) 1365
PaqCI CACCTGC 2 cut(s) 983, 1313
PceI AGGCCT 1 cut(s) 1297
PfeI GAWTC 7 cut(s) 71, 245, 430, 445, 701, 903, 1349
PkrI GCNGC 6 cut(s) 333, 592, 691, 937, 1018, 1206
Ple19I CGATCG 1 cut(s) 1193
PleI GAGTC 2 cut(s) 406, 1357
PmaCI CACGTG 1 cut(s) 680
PmlI CACGTG 1 cut(s) 680
PpsI GAGTC 2 cut(s) 406, 1357
Ppu21I YACGTR 1 cut(s) 680
PpuMI RGGWCCY 1 cut(s) 668
Psp124BI GAGCTC 1 cut(s) 865
Psp5II RGGWCCY 1 cut(s) 668
PspCI CACGTG 1 cut(s) 680
PspN4I GGNNCC 4 cut(s) 26, 502, 846, 1304
PspPI GGNCC 2 cut(s) 668, 1303
PspPPI RGGWCCY 1 cut(s) 668
PspXI VCTCGAGB 1 cut(s) 1365
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 844
PvuI CGATCG 1 cut(s) 1193
RsaI GTAC 3 cut(s) 462, 824, 1088
RsaNI GTAC 3 cut(s) 461, 823, 1087
RseI CAYNNNNRTG 1 cut(s) 1288
SacI GAGCTC 1 cut(s) 865
SaqAI TTAA 2 cut(s) 623, 1011
SatI GCNGC 6 cut(s) 332, 591, 690, 936, 1017, 1205
Sau3AI GATC 8 cut(s) 268, 345, 396, 718, 741, 844, 1190, 1394
Sau96I GGNCC 2 cut(s) 668, 1303
ScaI AGTACT 1 cut(s) 1088
SchI GAGTC 2 cut(s) 406, 1357
SduI GDGCHC 1 cut(s) 865
SfaNI GCATC 3 cut(s) 577, 942, 1121
Sfr274I CTCGAG 1 cut(s) 1365
SinI GGWCC 2 cut(s) 668, 1303
SlaI CTCGAG 1 cut(s) 1365
SmiMI CAYNNNNRTG 1 cut(s) 1288
SmlI CTYRAG 2 cut(s) 434, 1365
SmoI CTYRAG 2 cut(s) 434, 1365
Sse9I AATT 5 cut(s) 302, 552, 599, 1171, 1343
SseBI AGGCCT 1 cut(s) 1297
SsiI CCGC 7 cut(s) 261, 272, 278, 362, 856, 928, 1016
SspI AATATT 1 cut(s) 313
SspMI CTAG 4 cut(s) 380, 560, 779, 1227
SstI GAGCTC 1 cut(s) 865
StuI AGGCCT 1 cut(s) 1297
StyI CCWWGG 2 cut(s) 966, 1298
TaaI ACNGT 2 cut(s) 107, 1307
TaiI ACGT 3 cut(s) 515, 682, 1339
TaqI TCGA 3 cut(s) 348, 1193, 1366
TasI AATT 5 cut(s) 302, 552, 599, 1171, 1343
TatI WGTACW 2 cut(s) 460, 1086
TauI GCSGC 1 cut(s) 1019
TfiI GAWTC 7 cut(s) 71, 245, 430, 445, 701, 903, 1349
Tru1I TTAA 2 cut(s) 623, 1011
Tru9I TTAA 2 cut(s) 623, 1011
TseFI GTSAC 4 cut(s) 570, 733, 834, 1000
TseI GCWGC 5 cut(s) 331, 590, 689, 935, 1204
Tsp45I GTSAC 4 cut(s) 570, 733, 834, 1000
TspDTI ATGAA 4 cut(s) 17, 30, 206, 895
TspGWI ACGGA 3 cut(s) 26, 465, 1278
VpaK11BI GGWCC 2 cut(s) 668, 1303
XapI RAATTY 1 cut(s) 302
XhoI CTCGAG 1 cut(s) 1365
XmiI GTMKAC 1 cut(s) 1330
XspI CTAG 4 cut(s) 380, 560, 779, 1227
ZrmI AGTACT 1 cut(s) 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.