AT1G68340

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002115
Physical Location & Seq
Reverse (-)
25613926 .. 25615404
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68340.2

Sequence Viewer

Length: 741 bp
ATGGCGACGACGACGGGACACGAGAGATCAAAGACTCTTATCAATTTCTCGTTACCGAAGTTGTGGGGGACTCAACGACTTCTGCGGTGTGGGAAGGGTGATGATTCTGACGGTGACGGTGGTGAAGGTTCTAGCTCCGGCGGTGATCAACGAATCCGTCGCCGTTCTTCGAATTTCGAATCCGATCATCAGAATCGACGATTAAAGGTTGAATCATCGGAGAAAGAAGGAATCGAAGAGTTTAGAGAGAAGATTATGTTAGATCTTAGAAACGTTGCTGATAAGATGAAGGAATCTATATTTAGGCAACAAGTACTTCTCGGCGAAGAAGAAGAAGATAAGGAGATTGAGATTGAGAGGGATGATTCTCCGCCGGAAGCGACGGGAGCGGCGACGGTGGAGGTACGGCCGTGGAATTTGAGAAAGAGAAGAGCTGCTTGTAAAGCTTCGATTTCTTTAGGAATTGATTCGAAAAATCAGTGTAAGGAATCAGTGATGAATCCGTCGATGTTAGGAAACGAATTGGGGAAAGATAGGTCGAGATTGTTGTATACGTTGTCGAAGAAGGAGATTGAAGAAGATTATATGATGATGATAGGGTTAAAACCACCGCGTAGGCCTAAGAAACGATCAAGAACTGTTCAAAAACAGATCGATTTGTTGAATTTTGCTTCTTATATAACTGAAATCACTGAAGATCTTTATAATGTTCCTGACCAAGCTGAGAAGAGAAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

246

Amino Acids

28.14

Weight (kDa)

8.32

Isoelectric Point (pI)

73.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 186 - 235 2.8e-22 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 705
AccBSI CCGCTC 1 cut(s) 389
AccI GTMKAC 1 cut(s) 551
AccII CGCG 1 cut(s) 613
AciI CCGC 5 cut(s) 85, 141, 371, 389, 611
AclI AACGTT 1 cut(s) 273
AcoI YGGCCR 1 cut(s) 407
AcsI RAATTY 3 cut(s) 172, 415, 664
AcuI CTGAAG 1 cut(s) 714
AfaI GTAC 2 cut(s) 315, 405
AgsI TTSAA 4 cut(s) 212, 575, 644, 664
AluBI AGCT 4 cut(s) 135, 434, 446, 722
AluI AGCT 4 cut(s) 135, 434, 446, 722
AoxI GGCC 2 cut(s) 407, 617
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 3 cut(s) 172, 415, 664
Asp700I GAANNNNTTC 1 cut(s) 466
AsuHPI GGTGA 4 cut(s) 110, 125, 134, 155
AsuII TTCGAA 3 cut(s) 170, 177, 470
BaeI ACNNNNGTAYC 2 cut(s) 395, 428
BauI CACGAG 1 cut(s) 20
BbvI GCAGC 1 cut(s) 421
BceAI ACGGC 3 cut(s) 147, 394, 422
BclI TGATCA 1 cut(s) 145
BfaI CTAG 1 cut(s) 132
BglII AGATCT 2 cut(s) 262, 697
BisI GCNGC 2 cut(s) 390, 435
BlsI GCNGC 2 cut(s) 391, 436
BmcAI AGTACT 1 cut(s) 315
Bpu14I TTCGAA 3 cut(s) 170, 177, 470
Bsa29I ATCGAT 1 cut(s) 654
BsaJI CCNNGG 1 cut(s) 410
BseCI ATCGAT 1 cut(s) 654
BseDI CCNNGG 1 cut(s) 410
BseGI GGATG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 714
BseX3I CGGCCG 1 cut(s) 407
BseXI GCAGC 1 cut(s) 421
Bsh1236I CGCG 1 cut(s) 613
Bsh1285I CGRYCG 1 cut(s) 410
BshFI GGCC 2 cut(s) 409, 619
BshVI ATCGAT 1 cut(s) 654
BsiEI CGRYCG 1 cut(s) 410
BsiSI CCGG 2 cut(s) 138, 374
BslFI GGGAC 2 cut(s) 30, 82
BsmFI GGGAC 2 cut(s) 30, 82
BsnI GGCC 2 cut(s) 409, 619
Bsp119I TTCGAA 3 cut(s) 170, 177, 470
Bsp143I GATC 7 cut(s) 26, 145, 184, 262, 629, 651, 697
BspACI CCGC 5 cut(s) 85, 141, 371, 389, 611
BspANI GGCC 2 cut(s) 409, 619
BspCNI CTCAG 1 cut(s) 715
BspDI ATCGAT 1 cut(s) 654
BspFNI CGCG 1 cut(s) 613
BspQI GCTCTTC 1 cut(s) 424
BspT104I TTCGAA 3 cut(s) 170, 177, 470
BsrBI CCGCTC 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 410
BssMI GATC 7 cut(s) 26, 145, 184, 262, 629, 651, 697
BssNAI GTATAC 1 cut(s) 552
BssSI CACGAG 1 cut(s) 20
Bst1107I GTATAC 1 cut(s) 552
Bst2BI CACGAG 1 cut(s) 20
Bst4CI ACNGT 4 cut(s) 113, 119, 397, 640
Bst6I CTCTTC 3 cut(s) 231, 424, 722
BstBI TTCGAA 3 cut(s) 170, 177, 470
BstDEI CTNAG 3 cut(s) 266, 621, 723
BstDSI CCRYGG 1 cut(s) 410
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 1 cut(s) 613
BstKTI GATC 7 cut(s) 29, 148, 187, 265, 632, 654, 700
BstMBI GATC 7 cut(s) 26, 145, 184, 262, 629, 651, 697
BstMCI CGRYCG 1 cut(s) 410
BstMWI GCNNNNNNNGC 2 cut(s) 386, 443
BstUI CGCG 1 cut(s) 613
BstV1I GCAGC 1 cut(s) 421
BstX2I RGATCY 2 cut(s) 262, 697
BstYI RGATCY 2 cut(s) 262, 697
BstZ17I GTATAC 1 cut(s) 552
BstZI CGGCCG 1 cut(s) 407
Bsu15I ATCGAT 1 cut(s) 654
BsuRI GGCC 2 cut(s) 409, 619
BsuTUI ATCGAT 1 cut(s) 654
BtgI CCRYGG 1 cut(s) 410
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 3 cut(s) 485, 498, 690
ClaI ATCGAT 1 cut(s) 654
Csp6I GTAC 2 cut(s) 314, 404
CviJI RGCY 6 cut(s) 135, 409, 434, 446, 619, 722
CviKI_1 RGCY 6 cut(s) 135, 409, 434, 446, 619, 722
CviQI GTAC 2 cut(s) 314, 404
DdeI CTNAG 3 cut(s) 266, 621, 723
DpnI GATC 7 cut(s) 28, 147, 186, 264, 631, 653, 699
DpnII GATC 7 cut(s) 26, 145, 184, 262, 629, 651, 697
EaeI YGGCCR 1 cut(s) 407
EagI CGGCCG 1 cut(s) 407
Eam1104I CTCTTC 3 cut(s) 231, 424, 722
EarI CTCTTC 3 cut(s) 231, 424, 722
EciI GGCGGA 1 cut(s) 360
EclXI CGGCCG 1 cut(s) 407
Eco147I AGGCCT 1 cut(s) 619
Eco52I CGGCCG 1 cut(s) 407
Eco57I CTGAAG 1 cut(s) 714
FaiI YATR 8 cut(s) 257, 299, 552, 585, 587, 678, 680, 705
FalI AAGNNNNNCTT 2 cut(s) 421, 453
FaqI GGGAC 2 cut(s) 30, 82
FbaI TGATCA 1 cut(s) 145
FblI GTMKAC 1 cut(s) 551
Fnu4HI GCNGC 2 cut(s) 390, 435
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 390, 435
FspBI CTAG 1 cut(s) 132
GluI GCNGC 2 cut(s) 390, 435
HaeIII GGCC 2 cut(s) 409, 619
HapII CCGG 2 cut(s) 138, 374
HindIII AAGCTT 1 cut(s) 444
HpaII CCGG 2 cut(s) 138, 374
HphI GGTGA 4 cut(s) 110, 125, 134, 155
Hpy166II GTNNAC 1 cut(s) 552
Hpy188I TCNGA 4 cut(s) 109, 184, 192, 220
Hpy188III TCNNGA 3 cut(s) 540, 633, 713
Hpy8I GTNNAC 1 cut(s) 552
Hpy99I CGWCG 8 cut(s) 10, 13, 16, 162, 201, 385, 397, 508
HpyAV CCTTC 5 cut(s) 88, 119, 221, 283, 559
HpyCH4III ACNGT 4 cut(s) 113, 119, 397, 640
HpyCH4IV ACGT 2 cut(s) 273, 554
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 443
HpyF3I CTNAG 3 cut(s) 266, 621, 723
HpySE526I ACGT 2 cut(s) 273, 554
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 7 cut(s) 26, 145, 184, 262, 629, 651, 697
LguI GCTCTTC 1 cut(s) 424
LmnI GCTCC 2 cut(s) 140, 386
LpnPI CCDG 3 cut(s) 151, 387, 726
Lsp1109I GCAGC 1 cut(s) 421
MaeI CTAG 1 cut(s) 132
MaeII ACGT 2 cut(s) 273, 554
MaeIII GTNAC 2 cut(s) 51, 113
MalI GATC 7 cut(s) 28, 147, 186, 264, 631, 653, 699
MbiI CCGCTC 1 cut(s) 389
MboI GATC 7 cut(s) 26, 145, 184, 262, 629, 651, 697
MflI RGATCY 2 cut(s) 262, 697
MluCI AATT 6 cut(s) 43, 172, 415, 462, 521, 664
MlyI GAGTC 2 cut(s) 28, 64
MnlI CCTC 2 cut(s) 351, 394
MroXI GAANNNNTTC 1 cut(s) 466
MseI TTAA 2 cut(s) 203, 602
MspI CCGG 2 cut(s) 138, 374
MvnI CGCG 1 cut(s) 613
MwoI GCNNNNNNNGC 2 cut(s) 386, 443
NdeII GATC 7 cut(s) 26, 145, 184, 262, 629, 651, 697
NmeAIII GCCGAG 1 cut(s) 300
NmuCI GTSAC 1 cut(s) 113
NspV TTCGAA 3 cut(s) 170, 177, 470
PceI AGGCCT 1 cut(s) 619
PciSI GCTCTTC 1 cut(s) 424
PcsI WCGNNNNNNNCGW 1 cut(s) 389
PdmI GAANNNNTTC 1 cut(s) 466
PkrI GCNGC 2 cut(s) 391, 436
PleI GAGTC 2 cut(s) 28, 64
PpsI GAGTC 2 cut(s) 28, 64
PsiI TTATAA 1 cut(s) 705
Psp1406I AACGTT 1 cut(s) 273
PsuI RGATCY 2 cut(s) 262, 697
RsaI GTAC 2 cut(s) 315, 405
RsaNI GTAC 2 cut(s) 314, 404
SapI GCTCTTC 1 cut(s) 424
SaqAI TTAA 2 cut(s) 203, 602
SatI GCNGC 2 cut(s) 390, 435
Sau3AI GATC 7 cut(s) 26, 145, 184, 262, 629, 651, 697
ScaI AGTACT 1 cut(s) 315
SchI GAGTC 2 cut(s) 28, 64
SfuI TTCGAA 3 cut(s) 170, 177, 470
Sse9I AATT 6 cut(s) 43, 172, 415, 462, 521, 664
SseBI AGGCCT 1 cut(s) 619
SsiI CCGC 5 cut(s) 85, 141, 371, 389, 611
SspMI CTAG 1 cut(s) 132
StuI AGGCCT 1 cut(s) 619
TaaI ACNGT 4 cut(s) 113, 119, 397, 640
TaiI ACGT 2 cut(s) 276, 557
TasI AATT 6 cut(s) 43, 172, 415, 462, 521, 664
TatI WGTACW 1 cut(s) 313
TauI GCSGC 1 cut(s) 392
Tru1I TTAA 2 cut(s) 203, 602
Tru9I TTAA 2 cut(s) 203, 602
TscAI CASTG 3 cut(s) 485, 498, 697
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 434
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 302, 512
TspGWI ACGGA 2 cut(s) 146, 492
TspRI CASTG 3 cut(s) 485, 498, 697
XapI RAATTY 3 cut(s) 172, 415, 664
XmiI GTMKAC 1 cut(s) 551
XmnI GAANNNNTTC 1 cut(s) 466
XspI CTAG 1 cut(s) 132
ZrmI AGTACT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.