RchiOBHm_Chr4g0434851

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002115
Physical Location & Seq
Forward (+)
58507041 .. 58510708
3668 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40329

Sequence Viewer

Length: 954 bp
ATGGTGTATACAGGGGGGTCGGAGGAGAGAACGAGAGTGGTGGCGGCTAAGTCGTCGTCGGCGGCGGCGGGGATGAATTCCGAGAGAGCGGCGAAGCCTCTGCACAATTTCAGTTTGCCTTGGGATTTGAAGTGGGGGAACCAGAGGCACCTGCGGTGCATGAAGGTGGATTCCGATGGCGACGCGGCGGCGGATTTTGATCGGCGATCGGCGGTGGGGGTGGTTCGGCGGCGGGGAGGGGAATCGGAGGGGCTGTTCGACAGGCGGAGCAGGGTGAGGAGGCAGAGGATCGAGAGAGCCGGCGACGGCGAAGAGGAGGAGGGGATCGAGGCGGTGAGGGAGAAGCTCATGTTTGAATTCAAAACGGCGGCGGACAAGATGAAAGACGCGATTTTGAGAGGGGAGAAGGAAGAGGTGGAGGAGGAGGACGACCACGAGCCGGCGCCGGTTGCTGCTGCTGTTGTTACTGACGCGACGGCGGCGGCGGAGGAGGAGGACGCTGAGGCCGTGGCTGCGGAGGAGGGGGGATCGTCGCCGGCGGCGGCGGCGGTGAGGCCGTGGAATCTGAGGACGAGGAGGGCGGCGTGCAAGGCTCCAATTGGCGGTGGTGGCGGCAAGGGGTTGAAAATTGAGGAGAGGAAGACGAATTACTCGCCGTTGAGGAGTGAGGGAAACAATGGCGGCAAGTCACCGAGGCTGGTCCGAGGGGCTTCCGGTTCGGGTCTGGAGAAGGACGGGCCCAAGGAAAGGCCCAAGTTCTCACTCACGCTCTCCAAGAAGGAGATCGATGAGGATTTCATTCAGATGCTCGGCCACCGCCCTCCCCGCCGCCCCAAGAAGCGGCCCAGAGCGGTGCAGAAGCAATTGGATGCTTTGTTTCCCGGTATGTGGTTGACGGAGGTCTCAGCTGATTCGTACAAGGTTCCTGAGTTCCCTGAAAATGTCAAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

317

Amino Acids

34.81

Weight (kDa)

8.71

Isoelectric Point (pI)

70.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 257 - 306 2.4e-28 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 159
Acc36I ACCTGC 1 cut(s) 159
AccB1I GGYRCC 2 cut(s) 147, 442
AccBSI CCGCTC 2 cut(s) 89, 851
AccI GTMKAC 1 cut(s) 8
AccII CGCG 3 cut(s) 185, 389, 473
AclWI GGATC 3 cut(s) 296, 332, 535
AcoI YGGCCR 1 cut(s) 811
AcsI RAATTY 2 cut(s) 76, 356
AcyI GRCGYC 1 cut(s) 443
AfaI GTAC 1 cut(s) 917
AfiI CCNNNNNNNGG 5 cut(s) 439, 602, 747, 840, 888
AgsI TTSAA 4 cut(s) 130, 356, 361, 625
AloI GAACNNNNNNTCC 2 cut(s) 239, 271
AluBI AGCT 2 cut(s) 346, 908
AluI AGCT 2 cut(s) 346, 908
Alw26I GTCTC 1 cut(s) 907
AlwI GGATC 3 cut(s) 296, 332, 535
AoxI GGCC 6 cut(s) 504, 554, 737, 749, 811, 842
ApaI GGGCCC 1 cut(s) 741
ApeKI GCWGC 3 cut(s) 452, 455, 512
ApoI RAATTY 2 cut(s) 76, 356
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 5 cut(s) 700, 737, 738, 750, 843
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 4 cut(s) 286, 346, 562, 681
AvaII GGWCC 1 cut(s) 700
BaeGI GKGCMC 1 cut(s) 741
BanI GGYRCC 2 cut(s) 147, 442
BanII GRGCYC 1 cut(s) 741
BarI GAAGNNNNNNTAC 2 cut(s) 632, 664
BauI CACGAG 1 cut(s) 434
BbsI GAAGAC 1 cut(s) 647
BbvCI CCTCAGC 1 cut(s) 501
BbvI GCAGC 3 cut(s) 439, 442, 499
BccI CCATC 1 cut(s) 170
BceAI ACGGC 6 cut(s) 322, 381, 491, 492, 541, 640
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BcnI CCSGG 1 cut(s) 882
BcoDI GTCTC 1 cut(s) 907
BfoI RGCGCY 1 cut(s) 446
BfuAI ACCTGC 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 882
Bme18I GGWCC 1 cut(s) 700
BmgT120I GGNCC 5 cut(s) 700, 737, 738, 750, 843
BmiI GGNNCC 6 cut(s) 140, 149, 444, 594, 739, 924
BmrFI CCNGG 1 cut(s) 882
BmsI GCATC 2 cut(s) 795, 859
BoxI GACNNNNGTC 1 cut(s) 899
BpiI GAAGAC 1 cut(s) 647
BpmI CTGGAG 1 cut(s) 746
Bpu10I CCTNAGC 1 cut(s) 501
BpuMI CCSGG 1 cut(s) 882
Bsa29I ATCGAT 1 cut(s) 786
BsaBI GATNNNNATC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 443
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 6 cut(s) 119, 507, 557, 692, 703, 741
BsaWI WCCGGW 1 cut(s) 713
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 5 cut(s) 439, 602, 747, 840, 888
Bse118I RCCGGY 4 cut(s) 299, 439, 445, 535
Bse8I GATNNNNATC 1 cut(s) 198
BseCI ATCGAT 1 cut(s) 786
BseDI CCNNGG 6 cut(s) 119, 507, 557, 692, 703, 741
BseGI GGATG 2 cut(s) 78, 874
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 5 cut(s) 439, 602, 747, 840, 888
BseMII CTCAG 4 cut(s) 492, 557, 918, 918
BseSI GKGCMC 1 cut(s) 741
BseXI GCAGC 3 cut(s) 439, 442, 499
BsgI GTGCAG 2 cut(s) 86, 875
Bsh1236I CGCG 3 cut(s) 185, 389, 473
Bsh1285I CGRYCG 1 cut(s) 209
BshFI GGCC 6 cut(s) 506, 556, 739, 751, 813, 844
BshNI GGYRCC 2 cut(s) 147, 442
BshVI ATCGAT 1 cut(s) 786
BsiEI CGRYCG 1 cut(s) 209
BsiSI CCGG 6 cut(s) 300, 440, 446, 536, 714, 882
BslI CCNNNNNNNGG 5 cut(s) 439, 602, 747, 840, 888
BsmAI GTCTC 1 cut(s) 907
BsnI GGCC 6 cut(s) 506, 556, 739, 751, 813, 844
Bso31I GGTCTC 1 cut(s) 907
Bsp120I GGGCCC 1 cut(s) 737
Bsp1286I GDGCHC 1 cut(s) 741
Bsp143I GATC 6 cut(s) 199, 206, 288, 324, 527, 783
BspANI GGCC 6 cut(s) 506, 556, 739, 751, 813, 844
BspCNI CTCAG 4 cut(s) 493, 558, 917, 919
BspDI ATCGAT 1 cut(s) 786
BspFNI CGCG 3 cut(s) 185, 389, 473
BspLI GGNNCC 6 cut(s) 140, 149, 444, 594, 739, 924
BspMI ACCTGC 1 cut(s) 159
BspPI GGATC 3 cut(s) 296, 332, 535
BspT107I GGYRCC 2 cut(s) 147, 442
BspTNI GGTCTC 1 cut(s) 907
BsrBI CCGCTC 2 cut(s) 89, 851
BsrFI RCCGGY 4 cut(s) 299, 439, 445, 535
BssAI RCCGGY 4 cut(s) 299, 439, 445, 535
BssECI CCNNGG 6 cut(s) 119, 507, 557, 692, 703, 741
BssMI GATC 6 cut(s) 199, 206, 288, 324, 527, 783
BssNAI GTATAC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 443
BssSI CACGAG 1 cut(s) 434
BssT1I CCWWGG 2 cut(s) 119, 741
Bst1107I GTATAC 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 434
Bst6I CTCTTC 2 cut(s) 306, 405
BstACI GRCGYC 1 cut(s) 443
BstC8I GCNNGC 4 cut(s) 301, 441, 537, 586
BstDEI CTNAG 5 cut(s) 48, 501, 566, 904, 927
BstDSI CCRYGG 2 cut(s) 507, 557
BstF5I GGATG 2 cut(s) 78, 874
BstFNI CGCG 3 cut(s) 185, 389, 473
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 6 cut(s) 202, 209, 291, 327, 530, 786
BstMAI GTCTC 1 cut(s) 907
BstMBI GATC 6 cut(s) 199, 206, 288, 324, 527, 783
BstMCI CGRYCG 1 cut(s) 209
BstMWI GCNNNNNNNGC 7 cut(s) 449, 479, 512, 545, 590, 609, 825
BstPAI GACNNNNGTC 1 cut(s) 899
BstSCI CCNGG 1 cut(s) 880
BstSLI GKGCMC 1 cut(s) 741
BstUI CGCG 3 cut(s) 185, 389, 473
BstV1I GCAGC 3 cut(s) 439, 442, 499
BstV2I GAAGAC 1 cut(s) 647
BstZ17I GTATAC 1 cut(s) 9
Bsu15I ATCGAT 1 cut(s) 786
BsuRI GGCC 6 cut(s) 506, 556, 739, 751, 813, 844
BsuTUI ATCGAT 1 cut(s) 786
BtgI CCRYGG 2 cut(s) 507, 557
BtsCI GGATG 2 cut(s) 78, 874
BveI ACCTGC 1 cut(s) 159
Cac8I GCNNGC 4 cut(s) 301, 441, 537, 586
CfoI GCGC 1 cut(s) 445
Cfr10I RCCGGY 4 cut(s) 299, 439, 445, 535
Cfr13I GGNCC 5 cut(s) 700, 737, 738, 750, 843
ClaI ATCGAT 1 cut(s) 786
CseI GACGC 4 cut(s) 191, 395, 479, 506
Csp6I GTAC 1 cut(s) 916
CviAII CATG 2 cut(s) 160, 349
CviQI GTAC 1 cut(s) 916
DdeI CTNAG 5 cut(s) 48, 501, 566, 904, 927
DinI GGCGCC 1 cut(s) 444
DpnI GATC 6 cut(s) 201, 208, 290, 326, 529, 785
DpnII GATC 6 cut(s) 199, 206, 288, 324, 527, 783
EaeI YGGCCR 1 cut(s) 811
Eam1104I CTCTTC 2 cut(s) 306, 405
EarI CTCTTC 2 cut(s) 306, 405
EciI GGCGGA 4 cut(s) 206, 280, 386, 500
Eco130I CCWWGG 2 cut(s) 119, 741
Eco24I GRGCYC 1 cut(s) 741
Eco31I GGTCTC 1 cut(s) 907
Eco47I GGWCC 1 cut(s) 700
EcoRI GAATTC 2 cut(s) 76, 356
EcoT14I CCWWGG 2 cut(s) 119, 741
EcoT38I GRGCYC 1 cut(s) 741
EgeI GGCGCC 1 cut(s) 444
EheI GGCGCC 1 cut(s) 444
ErhI CCWWGG 2 cut(s) 119, 741
FaeI CATG 2 cut(s) 163, 352
FaiI YATR 4 cut(s) 9, 161, 350, 887
FatI CATG 2 cut(s) 159, 348
FauI CCCGC 3 cut(s) 61, 225, 833
FblI GTMKAC 1 cut(s) 8
FokI GGATG 2 cut(s) 85, 881
FriOI GRGCYC 1 cut(s) 741
GlaI GCGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 746
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 6 cut(s) 506, 556, 739, 751, 813, 844
HapII CCGG 6 cut(s) 300, 440, 446, 536, 714, 882
HgaI GACGC 4 cut(s) 191, 395, 479, 506
HhaI GCGC 1 cut(s) 445
Hin1I GRCGYC 1 cut(s) 443
Hin1II CATG 2 cut(s) 163, 352
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HincII GTYRAC 1 cut(s) 894
HindII GTYRAC 1 cut(s) 894
HinfI GANTC 4 cut(s) 170, 242, 562, 911
HpaII CCGG 6 cut(s) 300, 440, 446, 536, 714, 882
HphI GGTGA 4 cut(s) 286, 346, 562, 681
Hpy166II GTNNAC 2 cut(s) 9, 894
Hpy188I TCNGA 7 cut(s) 22, 82, 175, 247, 567, 704, 804
Hpy188III TCNNGA 4 cut(s) 292, 725, 926, 946
Hpy8I GTNNAC 2 cut(s) 9, 894
Hpy99I CGWCG 6 cut(s) 58, 61, 185, 308, 478, 535
HpyAV CCTTC 4 cut(s) 157, 400, 724, 772
HpyCH4V TGCA 4 cut(s) 103, 159, 588, 856
HpyF10VI GCNNNNNNNGC 7 cut(s) 449, 479, 512, 545, 590, 609, 825
HpyF3I CTNAG 5 cut(s) 48, 501, 566, 904, 927
Hsp92I GRCGYC 1 cut(s) 443
Hsp92II CATG 2 cut(s) 163, 352
HspAI GCGC 1 cut(s) 443
KasI GGCGCC 1 cut(s) 442
KroI GCCGGC 3 cut(s) 299, 439, 535
KroNI GCCGGC 3 cut(s) 301, 441, 537
Kzo9I GATC 6 cut(s) 199, 206, 288, 324, 527, 783
LmnI GCTCC 2 cut(s) 267, 598
Lsp1109I GCAGC 3 cut(s) 439, 442, 499
LweI GCATC 2 cut(s) 795, 859
MaeIII GTNAC 2 cut(s) 463, 687
MalI GATC 6 cut(s) 201, 208, 290, 326, 529, 785
MbiI CCGCTC 2 cut(s) 89, 851
MboI GATC 6 cut(s) 199, 206, 288, 324, 527, 783
MboII GAAGA 3 cut(s) 323, 422, 652
MfeI CAATTG 2 cut(s) 597, 863
MhlI GDGCHC 1 cut(s) 741
MluCI AATT 7 cut(s) 76, 106, 356, 597, 627, 646, 863
Mly113I GGCGCC 1 cut(s) 443
MreI CGCCGGCG 1 cut(s) 535
MroNI GCCGGC 3 cut(s) 299, 439, 535
MslI CAYNNNNRTG 2 cut(s) 164, 803
MspA1I CMGCKG 1 cut(s) 908
MspI CCGG 6 cut(s) 300, 440, 446, 536, 714, 882
MspR9I CCNGG 1 cut(s) 882
MunI CAATTG 2 cut(s) 597, 863
MvnI CGCG 3 cut(s) 185, 389, 473
MwoI GCNNNNNNNGC 7 cut(s) 449, 479, 512, 545, 590, 609, 825
NaeI GCCGGC 3 cut(s) 301, 441, 537
NarI GGCGCC 1 cut(s) 443
NciI CCSGG 1 cut(s) 882
NdeII GATC 6 cut(s) 199, 206, 288, 324, 527, 783
NgoMIV GCCGGC 3 cut(s) 299, 439, 535
NlaIII CATG 2 cut(s) 163, 352
NlaIV GGNNCC 6 cut(s) 140, 149, 444, 594, 739, 924
NmeAIII GCCGAG 1 cut(s) 789
NmuCI GTSAC 1 cut(s) 687
PaqCI CACCTGC 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 504
PdiI GCCGGC 3 cut(s) 301, 441, 537
PfeI GAWTC 4 cut(s) 170, 242, 562, 911
Ple19I CGATCG 1 cut(s) 209
PluTI GGCGCC 1 cut(s) 446
PshAI GACNNNNGTC 1 cut(s) 899
PspN4I GGNNCC 6 cut(s) 140, 149, 444, 594, 739, 924
PspOMI GGGCCC 1 cut(s) 737
PspPI GGNCC 5 cut(s) 700, 737, 738, 750, 843
PvuI CGATCG 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 908
RsaI GTAC 1 cut(s) 917
RsaNI GTAC 1 cut(s) 916
RseI CAYNNNNRTG 2 cut(s) 164, 803
Sau3AI GATC 6 cut(s) 199, 206, 288, 324, 527, 783
Sau96I GGNCC 5 cut(s) 700, 737, 738, 750, 843
ScrFI CCNGG 1 cut(s) 882
SduI GDGCHC 1 cut(s) 741
SetI ASST 8 cut(s) 153, 168, 348, 417, 903, 910, 924, 953
SfaNI GCATC 2 cut(s) 795, 859
SfoI GGCGCC 1 cut(s) 444
SgrAI CRCCGGYG 1 cut(s) 535
SinI GGWCC 1 cut(s) 700
SmiMI CAYNNNNRTG 2 cut(s) 164, 803
Sse9I AATT 7 cut(s) 76, 106, 356, 597, 627, 646, 863
SspDI GGCGCC 1 cut(s) 442
StyD4I CCNGG 1 cut(s) 880
StyI CCWWGG 2 cut(s) 119, 741
TaqI TCGA 4 cut(s) 258, 291, 327, 786
TasI AATT 7 cut(s) 76, 106, 356, 597, 627, 646, 863
TfiI GAWTC 4 cut(s) 170, 242, 562, 911
TseFI GTSAC 1 cut(s) 687
TseI GCWGC 3 cut(s) 452, 455, 512
Tsp45I GTSAC 1 cut(s) 687
TspDTI ATGAA 4 cut(s) 89, 176, 395, 787
TspGWI ACGGA 1 cut(s) 911
VpaK11BI GGWCC 1 cut(s) 700
XapI RAATTY 2 cut(s) 76, 356
XmiI GTMKAC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.