Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002115

Physical Location & Seq

Genomic Coordinates Reverse (-)

30367199 .. 30369142

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G313700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGTGTATATAGGTGTGTCGGGGGAGAGAGAGAGAGTGGCTGCTAAGTCCATGGCGATGGGTTCTGAGAGAACAAAGCCTCTGCACAATTTCAACTTGCCGTGGGATTTGAAGTGGGGGAACCAGAAGCACCTAAGGTGCATGAAGGTGAGCTCCGACGCTGGCGGTAGTACCGGAGAAGCCTCGGCCGTTGATCGGCGATCTTCGGCTCAGAGATTGGAGAGTTCGGTGATGATGACTCGGCGGAGGGAATCGGAGTTTGAGAAGCGGAGGTTTCGGGCTCCGCGGCCGAGGATCGAAAACGACGACGCAGAGGAAGGGATCGAAGCGGTTAGGGAGAAGCTCATGTTTGATCTCAAAACGGCGGCGGATAAGATGAAGGACGCGATTTTGAGGGAGGAGGAGGTGGCGGTGGCGGCTGCTGATACTGACATGGCGGCGGATGGGGAGGATGTTGAGATGGCGGAGGAGGGGGAATCATCGCCTGCGGCGGCGGCAGAGGTCAGGCCGTGGAATCTGAGGACGAGGAGGGCCGCGTGTAAGGCTCCTCTTTGTGGTGGTGGTGCGAAGGGGTTGAGAATCGAGGAGAAGAAGGCGAATTACTCGCCGTTGAGGAGTGAGGGTAACAATGGCGTGAAGTCGCCGAGGCCGGTCAGAGGGGCTTCGGGTTCGGGTTCGGGTTCGGGTCCGGAGAAGAAGGAGAAGGAGAAGGAGAGGGTCAAGTTCGCAGTGTCGCTTACCAAGAAGGAGATCGAGGAGGATTTCATGGTGATGCTCGGCCACAGGCCTCCTCGCCGGCCAAAGAAGCGCCCAAGAAATGTTCAGAAGCAATTGGATACGTTGTTTCCGGGGATGTGGTTGACGGAGGTCTCAGCTGAGACGTACAAGGTTCCTGAGTTCCCTGAAACTGCCAAGGTGATTGCTTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

311

Amino Acids

34.51

Weight (kDa)

9.3

Isoelectric Point (pI)

63.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25370 AT1G25370 AT1G68340 AT1G68340 AT1G68340
fragaria_vesca	FvH4_4g27050
malus_domestica	MD13G1039500.v1.1 MD16G1040400.v1.1
prunus_persica	Prupe.1G313700_v2.0.a1 Prupe.1G313700_v2.0.a1
pyrus_communis	pycom05g23430 pycom13g03400 pycom13g29000 pycom15g37110 pycom16g03510 pycom17g22390
rosa_chinensis	RchiOBHm_Chr2g0122051 RchiOBHm_Chr4g0434851 RchiOBHm_Chr5g0054211
rosa_laevigata	RLG00000001525 RLG00000006641 RLG00000020224
rosa_multiflora	Rmu_sc0000674.1_g000025 Rmu_sc0002398.1_g000003 Rmu_sc0003726.1_g000003 Rmu_sc0005624.1_g000003 Rmu_sc0009656.1_g000005
rosa_roxburghii	Rroxscaffold_156G00440310 Rroxscaffold_5G00342830 Rroxscaffold_5G00376060 Rroxscaffold_5G00383210
rosa_rugosa	Rorug04G0279400 Rorug04G0279500 Rorug04G0279600
rosa_samantha	Rh1AG099900 Rh2BG456800 Rh4CG259900 Rh4CG358400 Rh4DG337900 Rh7CG341700 Rh7CG453800 Rh7DG393600
rosa_wichuraiana	Rw4G029260 Rw7G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	286, 386, 536
AccIII	TCCGGA	1 cut(s)	688
AclWI	GGATC	2 cut(s)	302, 329
AcoI	YGGCCR	4 cut(s)	186, 287, 778, 797
AfaI	GTAC	2 cut(s)	172, 884
AfiI	CCNNNNNNNGG	3 cut(s)	195, 554, 656
AgsI	TTSAA	2 cut(s)	94, 112
AluBI	AGCT	3 cut(s)	153, 343, 875
AluI	AGCT	3 cut(s)	153, 343, 875
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	2 cut(s)	872, 874
AlwI	GGATC	2 cut(s)	302, 329
Aor13HI	TCCGGA	1 cut(s)	688
AoxI	GGCC	8 cut(s)	186, 287, 506, 531, 647, 778, 785, 797
ApeKI	GCWGC	2 cut(s)	41, 419
AspLEI	GCGC	1 cut(s)	810
AspS9I	GGNCC	2 cut(s)	531, 686
AsuC2I	CCSGG	1 cut(s)	849
AsuHPI	GGTGA	4 cut(s)	160, 241, 781, 928
AvaII	GGWCC	1 cut(s)	686
AxyI	CCTNAGG	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	155, 283
BarI	GAAGNNNNNNTAC	2 cut(s)	584, 616
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	28, 406
BccI	CCATC	3 cut(s)	52, 437, 454
BceAI	ACGGC	5 cut(s)	85, 173, 378, 493, 592
BciVI	GTATCC	1 cut(s)	829
BcnI	CCSGG	1 cut(s)	849
BcoDI	GTCTC	2 cut(s)	872, 874
BfoI	RGCGCY	1 cut(s)	811
BfuI	GTATCC	1 cut(s)	829
Bme1390I	CCNGG	1 cut(s)	849
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	2 cut(s)	531, 686
BmiI	GGNNCC	5 cut(s)	122, 282, 546, 687, 891
BmrFI	CCNGG	1 cut(s)	849
BmsI	GCATC	1 cut(s)	762
BoxI	GACNNNNGTC	1 cut(s)	866
BpuMI	CCSGG	1 cut(s)	849
BsaI	GGTCTC	1 cut(s)	874
BsaJI	CCNNGG	9 cut(s)	51, 101, 183, 284, 290, 509, 644, 848, 912
BsaWI	WCCGGW	2 cut(s)	173, 688
BsaXI	ACNNNNNCTCC	2 cut(s)	607, 637
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 554, 656
Bse118I	RCCGGY	2 cut(s)	649, 795
Bse21I	CCTNAGG	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	688
BseDI	CCNNGG	9 cut(s)	51, 101, 183, 284, 290, 509, 644, 848, 912
BseGI	GGATG	3 cut(s)	448, 457, 858
BseLI	CCNNNNNNNGG	3 cut(s)	195, 554, 656
BseMII	CTCAG	6 cut(s)	57, 224, 509, 867, 885, 885
BseRI	GAGGAG	9 cut(s)	413, 416, 482, 537, 541, 599, 628, 770, 780
BseX3I	CGGCCG	2 cut(s)	186, 287
BseXI	GCAGC	2 cut(s)	28, 406
BsgI	GTGCAG	1 cut(s)	68
Bsh1236I	CGCG	3 cut(s)	286, 386, 536
Bsh1285I	CGRYCG	2 cut(s)	189, 290
BshFI	GGCC	8 cut(s)	188, 289, 508, 533, 649, 780, 787, 799
BsiEI	CGRYCG	2 cut(s)	189, 290
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	5 cut(s)	174, 650, 689, 796, 848
BslI	CCNNNNNNNGG	3 cut(s)	195, 554, 656
BsmAI	GTCTC	2 cut(s)	872, 874
BsmBI	CGTCTC	1 cut(s)	872
BsnI	GGCC	8 cut(s)	188, 289, 508, 533, 649, 780, 787, 799
Bso31I	GGTCTC	1 cut(s)	874
Bsp1286I	GDGCHC	2 cut(s)	155, 283
Bsp13I	TCCGGA	1 cut(s)	688
Bsp143I	GATC	6 cut(s)	193, 200, 294, 321, 352, 750
Bsp19I	CCATGG	1 cut(s)	51
BspANI	GGCC	8 cut(s)	188, 289, 508, 533, 649, 780, 787, 799
BspCNI	CTCAG	6 cut(s)	58, 223, 510, 868, 884, 886
BspEI	TCCGGA	1 cut(s)	688
BspFNI	CGCG	3 cut(s)	286, 386, 536
BspLI	GGNNCC	5 cut(s)	122, 282, 546, 687, 891
BspPI	GGATC	2 cut(s)	302, 329
BspTNI	GGTCTC	1 cut(s)	874
BsrFI	RCCGGY	2 cut(s)	649, 795
BssAI	RCCGGY	2 cut(s)	649, 795
BssECI	CCNNGG	9 cut(s)	51, 101, 183, 284, 290, 509, 644, 848, 912
BssMI	GATC	6 cut(s)	193, 200, 294, 321, 352, 750
BssT1I	CCWWGG	2 cut(s)	51, 912
BstC8I	GCNNGC	3 cut(s)	163, 486, 797
BstDEI	CTNAG	8 cut(s)	45, 66, 134, 210, 518, 871, 876, 894
BstDSI	CCRYGG	4 cut(s)	51, 101, 284, 509
BstF5I	GGATG	3 cut(s)	448, 457, 858
BstFNI	CGCG	3 cut(s)	286, 386, 536
BstH2I	RGCGCY	1 cut(s)	811
BstHHI	GCGC	1 cut(s)	810
BstKTI	GATC	6 cut(s)	196, 203, 297, 324, 355, 753
BstMAI	GTCTC	2 cut(s)	872, 874
BstMBI	GATC	6 cut(s)	193, 200, 294, 321, 352, 750
BstMCI	CGRYCG	2 cut(s)	189, 290
BstMWI	GCNNNNNNNGC	4 cut(s)	416, 494, 542, 805
BstPAI	GACNNNNGTC	1 cut(s)	866
BstSCI	CCNGG	1 cut(s)	847
BstUI	CGCG	3 cut(s)	286, 386, 536
BstV1I	GCAGC	2 cut(s)	28, 406
BstXI	CCANNNNNNTGG	1 cut(s)	58
BstZI	CGGCCG	2 cut(s)	186, 287
Bsu36I	CCTNAGG	1 cut(s)	134
BsuI	GTATCC	1 cut(s)	829
BsuRI	GGCC	8 cut(s)	188, 289, 508, 533, 649, 780, 787, 799
BtgI	CCRYGG	4 cut(s)	51, 101, 284, 509
BtgZI	GCGATG	2 cut(s)	71, 465
BtsCI	GGATG	3 cut(s)	448, 457, 858
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	3 cut(s)	163, 486, 797
CfoI	GCGC	1 cut(s)	810
Cfr10I	RCCGGY	2 cut(s)	649, 795
Cfr13I	GGNCC	2 cut(s)	531, 686
Cfr42I	CCGCGG	1 cut(s)	287
CseI	GACGC	3 cut(s)	167, 317, 392
Csp6I	GTAC	2 cut(s)	171, 883
CviAII	CATG	5 cut(s)	52, 142, 346, 433, 766
CviQI	GTAC	2 cut(s)	171, 883
DdeI	CTNAG	8 cut(s)	45, 66, 134, 210, 518, 871, 876, 894
DpnI	GATC	6 cut(s)	195, 202, 296, 323, 354, 752
DpnII	GATC	6 cut(s)	193, 200, 294, 321, 352, 750
EaeI	YGGCCR	4 cut(s)	186, 287, 778, 797
EagI	CGGCCG	2 cut(s)	186, 287
EciI	GGCGGA	4 cut(s)	259, 383, 455, 479
Ecl136II	GAGCTC	1 cut(s)	153
EclXI	CGGCCG	2 cut(s)	186, 287
Eco130I	CCWWGG	2 cut(s)	51, 912
Eco147I	AGGCCT	1 cut(s)	787
Eco24I	GRGCYC	2 cut(s)	155, 283
Eco31I	GGTCTC	1 cut(s)	874
Eco47I	GGWCC	1 cut(s)	686
Eco52I	CGGCCG	2 cut(s)	186, 287
Eco53kI	GAGCTC	1 cut(s)	153
Eco81I	CCTNAGG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	153
EcoT14I	CCWWGG	2 cut(s)	51, 912
EcoT38I	GRGCYC	2 cut(s)	155, 283
ErhI	CCWWGG	2 cut(s)	51, 912
Esp3I	CGTCTC	1 cut(s)	872
FaeI	CATG	5 cut(s)	55, 145, 349, 436, 769
FaiI	YATR	7 cut(s)	9, 11, 53, 143, 347, 434, 767
FatI	CATG	5 cut(s)	51, 141, 345, 432, 765
FokI	GGATG	3 cut(s)	455, 464, 865
FriOI	GRGCYC	2 cut(s)	155, 283
GlaI	GCGC	1 cut(s)	809
HaeII	RGCGCY	1 cut(s)	811
HaeIII	GGCC	8 cut(s)	188, 289, 508, 533, 649, 780, 787, 799
HapII	CCGG	5 cut(s)	174, 650, 689, 796, 848
HgaI	GACGC	3 cut(s)	167, 317, 392
HhaI	GCGC	1 cut(s)	810
Hin1II	CATG	5 cut(s)	55, 145, 349, 436, 769
Hin6I	GCGC	1 cut(s)	808
HinP1I	GCGC	1 cut(s)	808
HincII	GTYRAC	1 cut(s)	861
HindII	GTYRAC	1 cut(s)	861
HinfI	GANTC	5 cut(s)	238, 251, 476, 514, 579
HpaII	CCGG	5 cut(s)	174, 650, 689, 796, 848
HphI	GGTGA	4 cut(s)	160, 241, 781, 928
Hpy166II	GTNNAC	1 cut(s)	861
Hpy188I	TCNGA	8 cut(s)	67, 157, 213, 256, 519, 656, 825, 932
Hpy188III	TCNNGA	2 cut(s)	689, 893
Hpy8I	GTNNAC	1 cut(s)	861
Hpy99I	CGWCG	3 cut(s)	161, 308, 311
HpyAV	CCTTC	9 cut(s)	139, 311, 373, 562, 586, 691, 697, 703, 739
HpyCH4IV	ACGT	2 cut(s)	839, 881
HpyCH4V	TGCA	2 cut(s)	85, 141
HpyF10VI	GCNNNNNNNGC	4 cut(s)	416, 494, 542, 805
HpyF3I	CTNAG	8 cut(s)	45, 66, 134, 210, 518, 871, 876, 894
HpySE526I	ACGT	2 cut(s)	839, 881
Hsp92II	CATG	5 cut(s)	55, 145, 349, 436, 769
HspAI	GCGC	1 cut(s)	808
Kpn2I	TCCGGA	1 cut(s)	688
KroI	GCCGGC	1 cut(s)	795
KroNI	GCCGGC	1 cut(s)	797
KspI	CCGCGG	1 cut(s)	287
Kzo9I	GATC	6 cut(s)	193, 200, 294, 321, 352, 750
LmnI	GCTCC	3 cut(s)	158, 286, 550
Lsp1109I	GCAGC	2 cut(s)	28, 406
LweI	GCATC	1 cut(s)	762
MaeII	ACGT	2 cut(s)	839, 881
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	6 cut(s)	195, 202, 296, 323, 354, 752
MboI	GATC	6 cut(s)	193, 200, 294, 321, 352, 750
MboII	GAAGA	3 cut(s)	195, 601, 706
MfeI	CAATTG	1 cut(s)	830
MhlI	GDGCHC	2 cut(s)	155, 283
MluCI	AATT	3 cut(s)	88, 598, 830
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	180
MroI	TCCGGA	1 cut(s)	688
MroNI	GCCGGC	1 cut(s)	795
MslI	CAYNNNNRTG	3 cut(s)	56, 146, 770
MspA1I	CMGCKG	2 cut(s)	286, 875
MspI	CCGG	5 cut(s)	174, 650, 689, 796, 848
MspR9I	CCNGG	1 cut(s)	849
MunI	CAATTG	1 cut(s)	830
MvnI	CGCG	3 cut(s)	286, 386, 536
MwoI	GCNNNNNNNGC	4 cut(s)	416, 494, 542, 805
NaeI	GCCGGC	1 cut(s)	797
NciI	CCSGG	1 cut(s)	849
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	6 cut(s)	193, 200, 294, 321, 352, 750
NgoMIV	GCCGGC	1 cut(s)	795
NlaIII	CATG	5 cut(s)	55, 145, 349, 436, 769
NlaIV	GGNNCC	5 cut(s)	122, 282, 546, 687, 891
NmeAIII	GCCGAG	5 cut(s)	164, 220, 315, 669, 756
PceI	AGGCCT	1 cut(s)	787
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PdiI	GCCGGC	1 cut(s)	797
PfeI	GAWTC	4 cut(s)	251, 476, 514, 579
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PshAI	GACNNNNGTC	1 cut(s)	866
Psp124BI	GAGCTC	1 cut(s)	155
PspN4I	GGNNCC	5 cut(s)	122, 282, 546, 687, 891
PspPI	GGNCC	2 cut(s)	531, 686
PvuII	CAGCTG	1 cut(s)	875
RsaI	GTAC	2 cut(s)	172, 884
RsaNI	GTAC	2 cut(s)	171, 883
RseI	CAYNNNNRTG	3 cut(s)	56, 146, 770
SacI	GAGCTC	1 cut(s)	155
SacII	CCGCGG	1 cut(s)	287
Sau3AI	GATC	6 cut(s)	193, 200, 294, 321, 352, 750
Sau96I	GGNCC	2 cut(s)	531, 686
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	849
SduI	GDGCHC	2 cut(s)	155, 283
SfaNI	GCATC	1 cut(s)	762
Sfr303I	CCGCGG	1 cut(s)	287
SgrBI	CCGCGG	1 cut(s)	287
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	3 cut(s)	56, 146, 770
Sse9I	AATT	3 cut(s)	88, 598, 830
SseBI	AGGCCT	1 cut(s)	787
SstI	GAGCTC	1 cut(s)	155
StuI	AGGCCT	1 cut(s)	787
StyD4I	CCNGG	1 cut(s)	847
StyI	CCWWGG	2 cut(s)	51, 912
TaiI	ACGT	2 cut(s)	842, 884
TaqI	TCGA	4 cut(s)	297, 324, 582, 753
TasI	AATT	3 cut(s)	88, 598, 830
TauI	GCSGC	8 cut(s)	289, 368, 419, 440, 491, 494, 497, 536
TfiI	GAWTC	4 cut(s)	251, 476, 514, 579
TscAI	CASTG	1 cut(s)	735
TseI	GCWGC	2 cut(s)	41, 419
TspDTI	ATGAA	3 cut(s)	158, 392, 754
TspGWI	ACGGA	1 cut(s)	878
TspRI	CASTG	1 cut(s)	735
VpaK11BI	GGWCC	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.