Rw7G033110

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002115
Physical Location & Seq
Reverse (-)
48596045 .. 48597887
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G033110.1

Sequence Viewer

Length: 339 bp
ATGGGGGTGGTTCGGTGGCGGGGAGGGGAATCGGAGGAGCAGTTTGACAGACGGAGAAAGGTAAGGAGGCAGAGGATTGAGAGCGCTGGCGACAGTGAAGACGAGGAAGGGATCGAGGCGGTGAGGGAGAAGCTCATGTTTGAATTCAAAACGGCGGCGAACAAGATGAAAGACAAGATTTTGAGATGGGAGAAGGAAGAGGTGATGTTGGAGAAACTGAAGTTTGAGAAAGAAGAAGGAAGAGGAAGAGAGCGTGTTGGTGCTGAAACCAGGACCAAGGTTAAGCAGCAGCCACTTACTGCCGAACCCTCAACCACAACTCCCTCAAAAGTCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

112

Amino Acids

13.14

Weight (kDa)

9.25

Isoelectric Point (pI)

78.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 19, 119, 155
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 239
AfeI AGCGCT 1 cut(s) 85
AgsI TTSAA 2 cut(s) 143, 148
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AlwI GGATC 1 cut(s) 119
Aor51HI AGCGCT 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 286, 289
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 273
AsuHPI GGTGA 2 cut(s) 133, 214
AvaII GGWCC 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 298, 301
BccI CCATC 1 cut(s) 180
BceAI ACGGC 1 cut(s) 168
BciT130I CCWGG 1 cut(s) 271
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 3 cut(s) 156, 287, 290
BlsI GCNGC 3 cut(s) 157, 288, 291
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 276
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 304, 334
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 2 cut(s) 298, 301
BslFI GGGAC 1 cut(s) 317
BsmFI GGGAC 1 cut(s) 317
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 3 cut(s) 19, 119, 155
BspPI GGATC 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 3 cut(s) 192, 235, 241
BstC8I GCNNGC 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 114
BstMBI GATC 1 cut(s) 111
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 298, 301
BstV2I GAAGAC 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 88
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 273
CviAII CATG 1 cut(s) 136
CviJI RGCY 2 cut(s) 133, 292
CviKI_1 RGCY 2 cut(s) 133, 292
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Eam1104I CTCTTC 3 cut(s) 192, 235, 241
EarI CTCTTC 3 cut(s) 192, 235, 241
Eco130I CCWWGG 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 273
Eco47III AGCGCT 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 1 cut(s) 139
FaiI YATR 2 cut(s) 137, 337
FaqI GGGAC 1 cut(s) 317
FatI CATG 1 cut(s) 135
FauI CCCGC 1 cut(s) 12
Fnu4HI GCNGC 3 cut(s) 156, 287, 290
Fsp4HI GCNGC 3 cut(s) 156, 287, 290
GlaI GCGC 1 cut(s) 85
GluI GCNGC 3 cut(s) 156, 287, 290
HaeII RGCGCY 1 cut(s) 87
HhaI GCGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 1 cut(s) 29
HphI GGTGA 2 cut(s) 133, 214
Hpy188I TCNGA 1 cut(s) 34
HpyAV CCTTC 3 cut(s) 101, 187, 230
HpyCH4III ACNGT 1 cut(s) 95
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 3 cut(s) 72, 256, 283
Lsp1109I GCAGC 2 cut(s) 298, 301
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 5 cut(s) 110, 209, 245, 252, 258
MluCI AATT 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 189
MseI TTAA 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 271
MvaI CCWGG 1 cut(s) 271
NdeII GATC 1 cut(s) 111
NlaIII CATG 1 cut(s) 139
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 3 cut(s) 157, 288, 291
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspPI GGNCC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 3 cut(s) 156, 287, 290
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 271
SetI ASST 4 cut(s) 63, 135, 204, 282
SinI GGWCC 1 cut(s) 273
Sse9I AATT 1 cut(s) 143
SsiI CCGC 3 cut(s) 19, 119, 155
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 143
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 100
TseI GCWGC 2 cut(s) 286, 289
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.