Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002115

Physical Location & Seq

Genomic Coordinates Forward (+)

2253796 .. 2255128

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGTGTATATAGGCGGGTCGGAGGAGGAAGAGAGAGTGGCGGCGAAGTCCATGGCGATGGGTTCCGAGAGGACGAAGGCTCTGCACAATTTCAACTTGCCGTGGGATTTGAAGTGGGGGAACCAGAAGCACCTGCGGTGCCAGAAGGAGAGCTCCGACGCCGGCGGGAGTGGCGGGGAAGGGTCGGGGGCTAATCGGCGATCGTCGGCTCAGAGGATGGAGAGCTCGCCGGCGGTGATGACTCGGCGGAGGGATTTGGAGTTCCAGAAGCGGAAGTTTCGGGCCCCGAGGCCGAGGATCGAAAACGACGATGCGGAGGAAGGGATCGATGCGTTTAGGCAGAAGCTCATGTTTGATCTCAAGACGGCGGCGGATAAGATGAAAGACGCGATTTTGAGGGAGAAGGAGGTGGCAGTGGCGGGGGCGGCTGCTGATACTGACGTGGCGGCGGCAGAGGAGGATGTTGAGATGGCGGAGGTTGGCGAATCGGAACCTCCGGTTGCGCCGGAGCCGGAGCAGCCGGAGGCGAGGCCGTGGAATCTGAGGACGAGGAGGGCGGCGTGCAAGGCTCCAATGGGCGGCGGCGGCGGCGGTGCTAAGGTGGTGAGAATCGAGGAAAAGAAGGCGAATTACTCGCCGTTGAGGAGTGAGGGTAACAATGGCGTGAAGTCGCCGAGGCTGGTGAGAGGGGCTTCGGTTTCGGGTCCAGAGAAGAATAAGGAGGAGGAGAAGCCCAAATTCTCGTTGACGCTCACCAAGAAGGAGATCGAGGAAGATTTCATGAAGATGCTCGGCCACCGCCCTCCCCGACGCCCAAAGAGGCGGCCAAGAAATGCTCAGAAGCAATTGGATGGTTTGTTTCCCGGTGCGTGGTTGACGGAGGTCTCGGCGGAGACGTACAAGGTTCCTGAGTTCCCTGAAAATACAAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

312

Amino Acids

34.59

Weight (kDa)

9.25

Isoelectric Point (pI)

73.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25370 AT1G25370 AT1G68340 AT1G68340 AT1G68340
fragaria_vesca	FvH4_4g27050
malus_domestica	MD13G1039500.v1.1 MD16G1040400.v1.1
prunus_persica	Prupe.1G313700_v2.0.a1 Prupe.1G313700_v2.0.a1
pyrus_communis	pycom05g23430 pycom13g03400 pycom13g29000 pycom15g37110 pycom16g03510 pycom17g22390
rosa_chinensis	RchiOBHm_Chr2g0122051 RchiOBHm_Chr4g0434851 RchiOBHm_Chr5g0054211
rosa_laevigata	RLG00000001525 RLG00000006641 RLG00000020224
rosa_multiflora	Rmu_sc0000674.1_g000025 Rmu_sc0002398.1_g000003 Rmu_sc0003726.1_g000003 Rmu_sc0005624.1_g000003 Rmu_sc0009656.1_g000005
rosa_roxburghii	Rroxscaffold_156G00440310 Rroxscaffold_5G00342830 Rroxscaffold_5G00376060 Rroxscaffold_5G00383210
rosa_rugosa	Rorug04G0279400 Rorug04G0279500 Rorug04G0279600
rosa_samantha	Rh1AG099900 Rh2BG456800 Rh4CG259900 Rh4CG358400 Rh4DG337900 Rh7CG341700 Rh7CG453800 Rh7DG393600
rosa_wichuraiana	Rw4G029260 Rw7G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	141
Acc36I	ACCTGC	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	138
AccII	CGCG	1 cut(s)	389
AclWI	GGATC	2 cut(s)	305, 332
AcoI	YGGCCR	2 cut(s)	793, 824
AcsI	RAATTY	1 cut(s)	737
AcyI	GRCGYC	2 cut(s)	159, 811
AfaI	GTAC	1 cut(s)	899
AfiI	CCNNNNNNNGG	2 cut(s)	578, 870
AgsI	TTSAA	2 cut(s)	94, 112
AjiI	CACGTC	1 cut(s)	442
AloI	GAACNNNNNNTCC	2 cut(s)	245, 277
AluBI	AGCT	3 cut(s)	153, 225, 346
AluI	AGCT	3 cut(s)	153, 225, 346
Alw21I	GWGCWC	2 cut(s)	155, 227
Alw26I	GTCTC	2 cut(s)	887, 889
AlwI	GGATC	2 cut(s)	305, 332
Ama87I	CYCGRG	1 cut(s)	286
AoxI	GGCC	5 cut(s)	282, 290, 530, 793, 824
ApaI	GGGCCC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	428, 517
ApoI	RAATTY	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	3 cut(s)	282, 283, 704
AsuC2I	CCSGG	1 cut(s)	864
AsuHPI	GGTGA	4 cut(s)	247, 616, 694, 745
AvaI	CYCGRG	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	704
BaeGI	GKGCMC	1 cut(s)	286
BaeI	ACNNNNGTAYC	2 cut(s)	426, 459
BanI	GGYRCC	1 cut(s)	138
BanII	GRGCYC	3 cut(s)	155, 227, 286
BarI	GAAGNNNNNNTAC	2 cut(s)	614, 646
Bbv12I	GWGCWC	2 cut(s)	155, 227
BbvI	GCAGC	2 cut(s)	415, 529
BccI	CCATC	4 cut(s)	52, 211, 463, 845
BceAI	ACGGC	4 cut(s)	85, 381, 517, 622
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BcnI	CCSGG	1 cut(s)	864
BcoDI	GTCTC	2 cut(s)	887, 889
BfuAI	ACCTGC	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	864
Bme18I	GGWCC	1 cut(s)	704
BmeT110I	CYCGRG	1 cut(s)	286
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	3 cut(s)	282, 283, 704
BmrFI	CCNGG	1 cut(s)	864
BmsI	GCATC	3 cut(s)	301, 319, 777
BoxI	GACNNNNGTC	1 cut(s)	881
Bpu10I	CCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	864
Bsa29I	ATCGAT	1 cut(s)	327
BsaHI	GRCGYC	2 cut(s)	159, 811
BsaI	GGTCTC	1 cut(s)	889
BsaJI	CCNNGG	6 cut(s)	51, 101, 287, 293, 533, 674
BsaWI	WCCGGW	1 cut(s)	496
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bsc4I	CCNNNNNNNGG	2 cut(s)	578, 870
Bse118I	RCCGGY	2 cut(s)	161, 229
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	6 cut(s)	51, 101, 287, 293, 533, 674
BseGI	GGATG	3 cut(s)	222, 466, 856
BseLI	CCNNNNNNNGG	2 cut(s)	578, 870
BseMII	CTCAG	4 cut(s)	224, 533, 851, 900
BseRI	GAGGAG	6 cut(s)	38, 470, 565, 658, 737, 740
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	2 cut(s)	415, 529
BsgI	GTGCAG	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	389
Bsh1285I	CGRYCG	1 cut(s)	203
BshFI	GGCC	5 cut(s)	284, 292, 532, 795, 826
BshNI	GGYRCC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	203
BsiHKAI	GWGCWC	2 cut(s)	155, 227
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	7 cut(s)	162, 230, 497, 506, 512, 521, 864
BslI	CCNNNNNNNGG	2 cut(s)	578, 870
BsmAI	GTCTC	2 cut(s)	887, 889
BsmBI	CGTCTC	1 cut(s)	887
BsnI	GGCC	5 cut(s)	284, 292, 532, 795, 826
Bso31I	GGTCTC	1 cut(s)	889
BsoBI	CYCGRG	1 cut(s)	286
Bsp120I	GGGCCC	1 cut(s)	282
Bsp1286I	GDGCHC	3 cut(s)	155, 227, 286
Bsp143I	GATC	5 cut(s)	200, 297, 324, 355, 765
Bsp19I	CCATGG	1 cut(s)	51
BspANI	GGCC	5 cut(s)	284, 292, 532, 795, 826
BspCNI	CTCAG	4 cut(s)	223, 534, 850, 901
BspDI	ATCGAT	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	780
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	305, 332
BspT107I	GGYRCC	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	889
BsrFI	RCCGGY	2 cut(s)	161, 229
BssAI	RCCGGY	2 cut(s)	161, 229
BssECI	CCNNGG	6 cut(s)	51, 101, 287, 293, 533, 674
BssMI	GATC	5 cut(s)	200, 297, 324, 355, 765
BssNI	GRCGYC	2 cut(s)	159, 811
BssT1I	CCWWGG	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	2 cut(s)	159, 811
BstC8I	GCNNGC	4 cut(s)	163, 227, 231, 562
BstDEI	CTNAG	5 cut(s)	210, 542, 597, 837, 909
BstDSI	CCRYGG	3 cut(s)	51, 101, 533
BstF5I	GGATG	3 cut(s)	222, 466, 856
BstFNI	CGCG	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	5 cut(s)	203, 300, 327, 358, 768
BstMAI	GTCTC	2 cut(s)	887, 889
BstMBI	GATC	5 cut(s)	200, 297, 324, 355, 765
BstMCI	CGRYCG	1 cut(s)	203
BstMWI	GCNNNNNNNGC	6 cut(s)	171, 425, 517, 566, 585, 588
BstPAI	GACNNNNGTC	1 cut(s)	881
BstSCI	CCNGG	1 cut(s)	862
BstSLI	GKGCMC	1 cut(s)	286
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	2 cut(s)	415, 529
BstXI	CCANNNNNNTGG	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	327
BsuRI	GGCC	5 cut(s)	284, 292, 532, 795, 826
BsuTUI	ATCGAT	1 cut(s)	327
BtgI	CCRYGG	3 cut(s)	51, 101, 533
BtgZI	GCGATG	1 cut(s)	71
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	3 cut(s)	222, 466, 856
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	4 cut(s)	163, 227, 231, 562
CciI	TCATGA	1 cut(s)	780
CfoI	GCGC	1 cut(s)	505
Cfr10I	RCCGGY	2 cut(s)	161, 229
Cfr13I	GGNCC	3 cut(s)	282, 283, 704
ClaI	ATCGAT	1 cut(s)	327
CseI	GACGC	4 cut(s)	167, 395, 757, 819
Csp6I	GTAC	1 cut(s)	898
CviAII	CATG	3 cut(s)	52, 349, 781
CviQI	GTAC	1 cut(s)	898
DdeI	CTNAG	5 cut(s)	210, 542, 597, 837, 909
DpnI	GATC	5 cut(s)	202, 299, 326, 357, 767
DpnII	GATC	5 cut(s)	200, 297, 324, 355, 765
EaeI	YGGCCR	2 cut(s)	793, 824
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	4 cut(s)	262, 386, 488, 905
Ecl136II	GAGCTC	2 cut(s)	153, 225
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	3 cut(s)	155, 227, 286
Eco31I	GGTCTC	1 cut(s)	889
Eco47I	GGWCC	1 cut(s)	704
Eco53kI	GAGCTC	2 cut(s)	153, 225
Eco88I	CYCGRG	1 cut(s)	286
EcoICRI	GAGCTC	2 cut(s)	153, 225
EcoO109I	RGGNCCY	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	3 cut(s)	155, 227, 286
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	887
FaeI	CATG	3 cut(s)	55, 352, 784
FaiI	YATR	5 cut(s)	9, 11, 53, 350, 782
FatI	CATG	3 cut(s)	51, 348, 780
FauI	CCCGC	4 cut(s)	8, 158, 167, 412
FokI	GGATG	3 cut(s)	229, 473, 863
FriOI	GRGCYC	3 cut(s)	155, 227, 286
GlaI	GCGC	1 cut(s)	504
HaeIII	GGCC	5 cut(s)	284, 292, 532, 795, 826
HapII	CCGG	7 cut(s)	162, 230, 497, 506, 512, 521, 864
HgaI	GACGC	4 cut(s)	167, 395, 757, 819
HhaI	GCGC	1 cut(s)	505
Hin1I	GRCGYC	2 cut(s)	159, 811
Hin1II	CATG	3 cut(s)	55, 352, 784
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HincII	GTYRAC	2 cut(s)	747, 876
HindII	GTYRAC	2 cut(s)	747, 876
HinfI	GANTC	4 cut(s)	241, 485, 538, 609
HpaII	CCGG	7 cut(s)	162, 230, 497, 506, 512, 521, 864
HphI	GGTGA	4 cut(s)	247, 616, 694, 745
Hpy166II	GTNNAC	2 cut(s)	747, 876
Hpy188I	TCNGA	7 cut(s)	22, 67, 157, 213, 490, 543, 840
Hpy188III	TCNNGA	5 cut(s)	265, 361, 707, 781, 908
Hpy8I	GTNNAC	2 cut(s)	747, 876
Hpy99I	CGWCG	4 cut(s)	161, 208, 311, 813
HpyAV	CCTTC	7 cut(s)	70, 139, 173, 314, 397, 616, 754
HpyCH4IV	ACGT	2 cut(s)	441, 896
HpyCH4V	TGCA	2 cut(s)	85, 564
HpyF10VI	GCNNNNNNNGC	6 cut(s)	171, 425, 517, 566, 585, 588
HpyF3I	CTNAG	5 cut(s)	210, 542, 597, 837, 909
HpySE526I	ACGT	2 cut(s)	441, 896
Hsp92I	GRCGYC	2 cut(s)	159, 811
Hsp92II	CATG	3 cut(s)	55, 352, 784
HspAI	GCGC	1 cut(s)	503
KroI	GCCGGC	2 cut(s)	161, 229
KroNI	GCCGGC	2 cut(s)	163, 231
Kzo9I	GATC	5 cut(s)	200, 297, 324, 355, 765
LmnI	GCTCC	4 cut(s)	158, 508, 514, 574
Lsp1109I	GCAGC	2 cut(s)	415, 529
LweI	GCATC	3 cut(s)	301, 319, 777
MaeII	ACGT	2 cut(s)	441, 896
MaeIII	GTNAC	1 cut(s)	653
MalI	GATC	5 cut(s)	202, 299, 326, 357, 767
MboI	GATC	5 cut(s)	200, 297, 324, 355, 765
MboII	GAAGA	4 cut(s)	41, 724, 785, 796
MfeI	CAATTG	1 cut(s)	845
MhlI	GDGCHC	3 cut(s)	155, 227, 286
MluCI	AATT	4 cut(s)	88, 628, 737, 845
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	180
MreI	CGCCGGCG	2 cut(s)	161, 229
MroNI	GCCGGC	2 cut(s)	161, 229
MslI	CAYNNNNRTG	2 cut(s)	56, 785
MspI	CCGG	7 cut(s)	162, 230, 497, 506, 512, 521, 864
MspR9I	CCNGG	1 cut(s)	864
MunI	CAATTG	1 cut(s)	845
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	6 cut(s)	171, 425, 517, 566, 585, 588
NaeI	GCCGGC	2 cut(s)	163, 231
NciI	CCSGG	1 cut(s)	864
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	5 cut(s)	200, 297, 324, 355, 765
NgoMIV	GCCGGC	2 cut(s)	161, 229
NlaIII	CATG	3 cut(s)	55, 352, 784
NmeAIII	GCCGAG	5 cut(s)	223, 318, 699, 771, 866
PagI	TCATGA	1 cut(s)	780
PaqCI	CACCTGC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	2 cut(s)	306, 893
PdiI	GCCGGC	2 cut(s)	163, 231
PfeI	GAWTC	3 cut(s)	485, 538, 609
Ple19I	CGATCG	1 cut(s)	203
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PshAI	GACNNNNGTC	1 cut(s)	881
Psp124BI	GAGCTC	2 cut(s)	155, 227
PspOMI	GGGCCC	1 cut(s)	282
PspPI	GGNCC	3 cut(s)	282, 283, 704
PvuI	CGATCG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	899
RsaNI	GTAC	1 cut(s)	898
RseI	CAYNNNNRTG	2 cut(s)	56, 785
SacI	GAGCTC	2 cut(s)	155, 227
Sau3AI	GATC	5 cut(s)	200, 297, 324, 355, 765
Sau96I	GGNCC	3 cut(s)	282, 283, 704
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	864
SduI	GDGCHC	3 cut(s)	155, 227, 286
SfaNI	GCATC	3 cut(s)	301, 319, 777
SgrAI	CRCCGGYG	2 cut(s)	161, 229
SinI	GGWCC	1 cut(s)	704
SmiMI	CAYNNNNRTG	2 cut(s)	56, 785
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	4 cut(s)	88, 628, 737, 845
SstI	GAGCTC	2 cut(s)	155, 227
StyD4I	CCNGG	1 cut(s)	862
StyI	CCWWGG	1 cut(s)	51
TaiI	ACGT	2 cut(s)	444, 899
TaqI	TCGA	4 cut(s)	300, 327, 612, 768
TasI	AATT	4 cut(s)	88, 628, 737, 845
TfiI	GAWTC	3 cut(s)	485, 538, 609
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	2 cut(s)	428, 517
TspDTI	ATGAA	3 cut(s)	395, 769, 797
TspGWI	ACGGA	1 cut(s)	893
TspRI	CASTG	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	704
XapI	RAATTY	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.