Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002398.1

Orthogroup ID

OG0002115

Physical Location & Seq

Genomic Coordinates Forward (+)

11501 .. 13136

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002398.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgggacctacagttggacagaaacttaccatacaggggtgcagaggtgatttacgaaatgagtctacagatttgaaggtgcatgttggactgcaattcaacaaaattagacgtgggggtcattcacaggccggactggccccatcatctctaaggcctagtttgaagaagggattggttcctaatggaaaattttttgccgtggggggcaagaagaagactgtttggaagggtaggaaggttctccataatgaaaatttgagtcagggacgcgctcagaagtgttcaaccgtgatggaggaggagaaggacgctgaggtttcggaggaggggggatcgtcgcagccggtgaggctgtggaatctgaggacgaggaaggctccaattggcggtggcggcggcaaggggttgaaaatagaggagagaaaggtgaattacttgccgtgggagagtaaggatctagagaagaaggacggggccaagttctcactcactctctccaagaaggagatcgaagaggatttcatacagatgctcggccaccgccctccggctgccccaagaagaggcctagagtggtgcagaagcaattggatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

199

Amino Acids

22.08

Weight (kDa)

10.01

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25370 AT1G25370 AT1G68340 AT1G68340 AT1G68340
fragaria_vesca	FvH4_4g27050
malus_domestica	MD13G1039500.v1.1 MD16G1040400.v1.1
prunus_persica	Prupe.1G313700_v2.0.a1 Prupe.1G313700_v2.0.a1
pyrus_communis	pycom05g23430 pycom13g03400 pycom13g29000 pycom15g37110 pycom16g03510 pycom17g22390
rosa_chinensis	RchiOBHm_Chr2g0122051 RchiOBHm_Chr4g0434851 RchiOBHm_Chr5g0054211
rosa_laevigata	RLG00000001525 RLG00000006641 RLG00000020224
rosa_multiflora	Rmu_sc0000674.1_g000025 Rmu_sc0002398.1_g000003 Rmu_sc0003726.1_g000003 Rmu_sc0005624.1_g000003 Rmu_sc0009656.1_g000005
rosa_roxburghii	Rroxscaffold_156G00440310 Rroxscaffold_5G00342830 Rroxscaffold_5G00376060 Rroxscaffold_5G00383210
rosa_rugosa	Rorug04G0279400 Rorug04G0279500 Rorug04G0279600
rosa_samantha	Rh1AG099900 Rh2BG456800 Rh4CG259900 Rh4CG358400 Rh4DG337900 Rh7CG341700 Rh7CG453800 Rh7DG393600
rosa_wichuraiana	Rw4G029260 Rw7G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	65
AccII	CGCG	1 cut(s)	273
AciI	CCGC	4 cut(s)	390, 396, 399, 544
AclWI	GGATC	2 cut(s)	343, 465
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	2 cut(s)	191, 256
AfiI	CCNNNNNNNGG	5 cut(s)	14, 36, 389, 550, 566
AgsI	TTSAA	5 cut(s)	76, 100, 166, 288, 412
AjiI	CACGTC	1 cut(s)	113
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AlwI	GGATC	2 cut(s)	343, 465
AoxI	GGCC	6 cut(s)	129, 138, 155, 477, 538, 568
ApeKI	GCWGC	2 cut(s)	343, 554
ApoI	RAATTY	2 cut(s)	191, 256
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	3 cut(s)	5, 139, 477
AsuHPI	GGTGA	3 cut(s)	59, 361, 442
AvaII	GGWCC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	224
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	355, 541
BccI	CCATC	2 cut(s)	151, 289
BceAI	ACGGC	2 cut(s)	185, 427
BfaI	CTAG	3 cut(s)	159, 461, 572
BfmI	CTRYAG	2 cut(s)	9, 66
BglI	GCCNNNNNGGC	2 cut(s)	137, 352
BisI	GCNGC	4 cut(s)	344, 397, 400, 555
BlsI	GCNGC	4 cut(s)	345, 398, 401, 556
Bme18I	GGWCC	1 cut(s)	5
BmgBI	CACGTC	1 cut(s)	113
BmgT120I	GGNCC	3 cut(s)	5, 139, 477
BmiI	GGNNCC	5 cut(s)	6, 141, 180, 381, 478
BmsI	GCATC	1 cut(s)	522
BpiI	GAAGAC	1 cut(s)	224
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
Bpu10I	CCTNAGC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	201, 443
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 36, 389, 550, 566
Bse118I	RCCGGY	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	201, 443
BseLI	CCNNNNNNNGG	5 cut(s)	14, 36, 389, 550, 566
BseMII	CTCAG	3 cut(s)	290, 306, 356
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	4 cut(s)	314, 317, 341, 434
BseXI	GCAGC	2 cut(s)	355, 541
BsgI	GTGCAG	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	6 cut(s)	131, 140, 157, 479, 540, 570
BsiSI	CCGG	3 cut(s)	132, 347, 551
BslFI	GGGAC	2 cut(s)	18, 282
BslI	CCNNNNNNNGG	5 cut(s)	14, 36, 389, 550, 566
BsmFI	GGGAC	2 cut(s)	18, 282
BsnI	GGCC	6 cut(s)	131, 140, 157, 479, 540, 570
Bsp143I	GATC	3 cut(s)	335, 457, 510
BspACI	CCGC	4 cut(s)	390, 396, 399, 544
BspANI	GGCC	6 cut(s)	131, 140, 157, 479, 540, 570
BspCNI	CTCAG	3 cut(s)	289, 307, 357
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	5 cut(s)	6, 141, 180, 381, 478
BspPI	GGATC	2 cut(s)	343, 465
BsrFI	RCCGGY	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	201, 443
BssMI	GATC	3 cut(s)	335, 457, 510
Bst4CI	ACNGT	3 cut(s)	13, 223, 292
Bst6I	CTCTTC	2 cut(s)	510, 559
BstDEI	CTNAG	4 cut(s)	152, 276, 315, 365
BstDSI	CCRYGG	2 cut(s)	201, 443
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	3 cut(s)	338, 460, 513
BstMBI	GATC	3 cut(s)	335, 457, 510
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 352, 396
BstNSI	RCATGY	1 cut(s)	86
BstSFI	CTRYAG	2 cut(s)	9, 66
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	355, 541
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	6 cut(s)	131, 140, 157, 479, 540, 570
BtgI	CCRYGG	2 cut(s)	201, 443
BtrI	CACGTC	1 cut(s)	113
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	3 cut(s)	5, 139, 477
CseI	GACGC	2 cut(s)	279, 320
CviAII	CATG	1 cut(s)	83
DdeI	CTNAG	4 cut(s)	152, 276, 315, 365
DpnI	GATC	3 cut(s)	337, 459, 512
DpnII	GATC	3 cut(s)	335, 457, 510
DrdI	GACNNNNNNGTC	1 cut(s)	117
DseDI	GACNNNNNNGTC	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	510, 559
EarI	CTCTTC	2 cut(s)	510, 559
Eco147I	AGGCCT	2 cut(s)	157, 570
Eco47I	GGWCC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	5
FaeI	CATG	1 cut(s)	86
FaiI	YATR	5 cut(s)	32, 84, 249, 527, 598
FaqI	GGGAC	2 cut(s)	18, 282
FatI	CATG	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	4 cut(s)	344, 397, 400, 555
Fsp4HI	GCNGC	4 cut(s)	344, 397, 400, 555
FspBI	CTAG	3 cut(s)	159, 461, 572
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	4 cut(s)	344, 397, 400, 555
HaeIII	GGCC	6 cut(s)	131, 140, 157, 479, 540, 570
HapII	CCGG	3 cut(s)	132, 347, 551
HgaI	GACGC	2 cut(s)	279, 320
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	3 cut(s)	62, 262, 361
HpaII	CCGG	3 cut(s)	132, 347, 551
HphI	GGTGA	3 cut(s)	59, 361, 442
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	3 cut(s)	279, 325, 366
Hpy188III	TCNNGA	1 cut(s)	461
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	8 cut(s)	70, 163, 223, 232, 301, 370, 463, 499
HpyCH4III	ACNGT	3 cut(s)	13, 223, 292
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	4 cut(s)	42, 82, 94, 582
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 352, 396
HpyF3I	CTNAG	4 cut(s)	152, 276, 315, 365
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	86
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	335, 457, 510
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	7 cut(s)	20, 113, 122, 145, 251, 360, 564
Lsp1109I	GCAGC	2 cut(s)	355, 541
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	3 cut(s)	159, 461, 572
MaeII	ACGT	1 cut(s)	112
MalI	GATC	3 cut(s)	337, 459, 512
MboI	GATC	3 cut(s)	335, 457, 510
MboII	GAAGA	6 cut(s)	178, 226, 229, 478, 527, 576
MfeI	CAATTG	2 cut(s)	384, 589
MflI	RGATCY	1 cut(s)	457
MluCI	AATT	7 cut(s)	95, 105, 191, 256, 384, 433, 589
MlyI	GAGTC	2 cut(s)	71, 271
MmeI	TCCRAC	1 cut(s)	67
MslI	CAYNNNNRTG	1 cut(s)	530
MspI	CCGG	3 cut(s)	132, 347, 551
MunI	CAATTG	2 cut(s)	384, 589
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	137, 352, 396
NdeII	GATC	3 cut(s)	335, 457, 510
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	5 cut(s)	6, 141, 180, 381, 478
NmeAIII	GCCGAG	1 cut(s)	516
NspI	RCATGY	1 cut(s)	86
PceI	AGGCCT	2 cut(s)	157, 570
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	4 cut(s)	345, 398, 401, 556
PleI	GAGTC	2 cut(s)	70, 270
PpsI	GAGTC	2 cut(s)	70, 270
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	5 cut(s)	6, 141, 180, 381, 478
PspPI	GGNCC	3 cut(s)	5, 139, 477
PspPPI	RGGWCCY	1 cut(s)	5
PsuI	RGATCY	1 cut(s)	457
RseI	CAYNNNNRTG	1 cut(s)	530
SatI	GCNGC	4 cut(s)	344, 397, 400, 555
Sau3AI	GATC	3 cut(s)	335, 457, 510
Sau96I	GGNCC	3 cut(s)	5, 139, 477
SchI	GAGTC	2 cut(s)	71, 271
SetI	ASST	7 cut(s)	10, 49, 81, 115, 243, 321, 432
SfaNI	GCATC	1 cut(s)	522
SfcI	CTRYAG	2 cut(s)	9, 66
SfiI	GGCCNNNNNGGCC	1 cut(s)	137
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	530
Sse9I	AATT	7 cut(s)	95, 105, 191, 256, 384, 433, 589
SseBI	AGGCCT	2 cut(s)	157, 570
SsiI	CCGC	4 cut(s)	390, 396, 399, 544
SspMI	CTAG	3 cut(s)	159, 461, 572
StuI	AGGCCT	2 cut(s)	157, 570
TaaI	ACNGT	3 cut(s)	13, 223, 292
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	513
TasI	AATT	7 cut(s)	95, 105, 191, 256, 384, 433, 589
TauI	GCSGC	2 cut(s)	399, 402
TfiI	GAWTC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	343, 554
TspDTI	ATGAA	2 cut(s)	267, 514
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	2 cut(s)	191, 256
XbaI	TCTAGA	1 cut(s)	460
XceI	RCATGY	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	3 cut(s)	159, 461, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.