Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002115

Physical Location & Seq

Genomic Coordinates Forward (+)

25321117 .. 25323778

Gene Structure 2662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23430.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1887 bp

ATGTCCTTGTTGGCTAAATTAAGGGGCCTAGAGAAAGTCCAAGGAGCAAATCATTCCATAATTTCGTTTTTATTTTTTAACCACGCAATATTATTATACGTTGCATTAAGAAGAGGAAACTCTTATGAAAGTTCACTACTTGTAGTCATTTTCCATTTTAAATGGATGAATATTTTTGCACTCACGTACTCTGTATTGTCATTTGTCACCTTTTGCACATGTATCTTAGTTTTGGCCATCAATTTTAGTTTGATTTATTTTTCTTTGTTATCTAATAATCTTTTTTTTGGGTATTCAGTTGAACTAAGTGGTAGTTGTTGGTATATATTGAAAGATATTATACCAAATGCCCGTCCCTTAATTTTTAAATTACTTCTTCACTCGTACCATTTTGTTGACAAAAACTTGTTTTGCATTCTCTGCGATCTCGGTTGCAAGGCGTCTGAAAGACAAAGCATTGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTTTGAAAACTTTGAGTTTTAATGATAATGATCAAAATAAGAGAAATAGTACTGAGAACTTTTCGTTAAAGTTTAAAAAAAAAAAAAAGATTAATTACAGTAAGTTTGCTGTGACTAATTCTCATTGGAAAATGTTTAAATTAACTAATAATTTCAAATGGTACGAAGAAGTACAAAATAGGACTTATATGCTGCTGACATACACAATCAATAAATATTTGGACTTTCATACCTCATCTTTTAAAATTGACAATGTCATACCTCATCTTACGAATTTGTGTCAATCTCAGACCTCCGTTAGTTTTTCTATAAAATATTTAATATTTAAAAAAAAAACAAAAAACCAAAAAAAAAACCCATCAACCCGTGTCCCCCTTCCCCAAAAACCTAGATCCCCTTATCTGAGTTCTCTCCCACCCAACCCTCTCTTTTTCTCTCTATCTCGCCTCTTTCTCTTCTCTCCCTTCCCACCTGTCCCCACCAAACCTTCCTCTCCGATCCCACCGACAACAACCCTACCTCTATCTTTGACTCCAGCGATGACAGCCACGACCCCTAATCGCCCCCAAACCCTAACTCTAGCCATTACCTCTACAACAACATTCCCTTCTTCTCCTCACCCCCAGAGTCTACCCATCTGGCGATTTGTGAGAGAAAAACAAAACAATAACAACAATAACAATCCCAATAGAAAAACTCTCCGTTTTTCCCAGAAAATTTCGAGATTTTCCAAGAAAATCAAAGGATGCACGAGAAACAGAGAGGGAAAGTTGGTGTATATAGGCGGGTCGGATGAGGAGGAGAAAGTGGAGGTGAAGTCCATGACGATGGGTTATGAGAGGGCGAAGCCTCTGTACAATTTCAACTTGCCGTGGTATTTGAAGTGGGGAAACCAGAAGCACTTGTGGTGCCAGAAGGAGAGCTTCGATGCCAGTGGGAGTGGCAAGGAAGGGTATGGGGTTAATCGGCGATCGTTAGCTCAGAGGATTGAGAGCTCGTCGGCAGTGATGACTCGGGTGGGAATGGTTTCTGGTTTTGGGATTTTAGGGATGCAGGTTGCAAGGAGAGATAAGAGAAAAAGGCGAGAGAGAAAGAGAGAGGGTTGGGTAGAGGAGAACTCAAAGAAGAGGATCTGGGTTTTTGGGGAGGGGGACACGGTTAATTTTTTTTGTAATAAAAATGGATCCCGTTTCTGCCCACGTCAGCATTTAACAGAAAAAGTAACAGAAAAACTGACGGAAATAAGGTATGAAAGTGTCGTGACACCAATAATTGAGGTAGTTTTTTTTCCAAAAAAAAAAAAAAAAAAAAAGAAGAAGAGAGGATTAATTACAGTTTTACCTGAGCATATTGCCTTTTCAAATGACATTAGTTATTTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

629

Amino Acids

72.85

Weight (kDa)

10.15

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25370 AT1G25370 AT1G68340 AT1G68340 AT1G68340
fragaria_vesca	FvH4_4g27050
malus_domestica	MD13G1039500.v1.1 MD16G1040400.v1.1
prunus_persica	Prupe.1G313700_v2.0.a1 Prupe.1G313700_v2.0.a1
pyrus_communis	pycom05g23430 pycom13g03400 pycom13g29000 pycom15g37110 pycom16g03510 pycom17g22390
rosa_chinensis	RchiOBHm_Chr2g0122051 RchiOBHm_Chr4g0434851 RchiOBHm_Chr5g0054211
rosa_laevigata	RLG00000001525 RLG00000006641 RLG00000020224
rosa_multiflora	Rmu_sc0000674.1_g000025 Rmu_sc0002398.1_g000003 Rmu_sc0003726.1_g000003 Rmu_sc0005624.1_g000003 Rmu_sc0009656.1_g000005
rosa_roxburghii	Rroxscaffold_156G00440310 Rroxscaffold_5G00342830 Rroxscaffold_5G00376060 Rroxscaffold_5G00383210
rosa_rugosa	Rorug04G0279400 Rorug04G0279500 Rorug04G0279600
rosa_samantha	Rh1AG099900 Rh2BG456800 Rh4CG259900 Rh4CG358400 Rh4DG337900 Rh7CG341700 Rh7CG453800 Rh7DG393600
rosa_wichuraiana	Rw4G029260 Rw7G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1546
AccB1I	GGYRCC	1 cut(s)	1410
AccI	GTMKAC	1 cut(s)	1132
AciI	CCGC	1 cut(s)	1287
AclWI	GGATC	5 cut(s)	888, 994, 1640, 1680, 1693
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	2 cut(s)	775, 1218
AcyI	GRCGYC	1 cut(s)	440
AfaI	GTAC	6 cut(s)	188, 386, 553, 665, 675, 1358
AflIII	ACRYGT	1 cut(s)	218
AgsI	TTSAA	7 cut(s)	302, 331, 508, 658, 1366, 1384, 1863
AjiI	CACGTC	1 cut(s)	1703
AluBI	AGCT	3 cut(s)	1425, 1481, 1497
AluI	AGCT	3 cut(s)	1425, 1481, 1497
Alw21I	GWGCWC	1 cut(s)	1499
AlwI	GGATC	5 cut(s)	888, 994, 1640, 1680, 1693
Ama87I	CYCGRG	1 cut(s)	1515
AoxI	GGCC	2 cut(s)	25, 234
ApeKI	GCWGC	1 cut(s)	694
ApoI	RAATTY	2 cut(s)	775, 1218
AseI	ATTAAT	2 cut(s)	594, 1829
Asp700I	GAANNNNTTC	1 cut(s)	1528
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	3 cut(s)	199, 1112, 1327
AvaI	CYCGRG	1 cut(s)	1515
BalI	TGGCCA	1 cut(s)	236
BamHI	GGATCC	1 cut(s)	1685
BanI	GGYRCC	1 cut(s)	1410
BanII	GRGCYC	1 cut(s)	1499
BarI	GAAGNNNNNNTAC	2 cut(s)	1340, 1372
BauI	CACGAG	1 cut(s)	1252
Bbv12I	GWGCWC	1 cut(s)	1499
BbvI	GCAGC	1 cut(s)	681
BccI	CCATC	4 cut(s)	245, 868, 1145, 1324
BceAI	ACGGC	1 cut(s)	1357
BclI	TGATCA	1 cut(s)	532
BfaI	CTAG	3 cut(s)	29, 891, 1082
BfuAI	ACCTGC	1 cut(s)	1546
BisI	GCNGC	1 cut(s)	695
BlsI	GCNGC	1 cut(s)	696
BmcAI	AGTACT	1 cut(s)	553
BmeT110I	CYCGRG	1 cut(s)	1515
BmgBI	CACGTC	1 cut(s)	1703
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	3 cut(s)	26, 1412, 1687
BmsI	GCATC	3 cut(s)	1238, 1420, 1542
BplI	GAGNNNNNCTC	2 cut(s)	1604, 1636
BpmI	CTGGAG	1 cut(s)	1020
Bpu10I	CCTNAGC	1 cut(s)	1845
BsaAI	YACGTR	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	40, 1373
BsaXI	ACNNNNNCTCC	2 cut(s)	1304, 1334
Bse1I	ACTGG	1 cut(s)	1434
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	40, 1373
BseGI	GGATG	4 cut(s)	171, 1253, 1300, 1557
BseJI	GATNNNNATC	1 cut(s)	531
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	5 cut(s)	546, 803, 896, 1496, 1836
BseNI	ACTGG	1 cut(s)	1434
BseRI	GAGGAG	4 cut(s)	1107, 1313, 1316, 1628
BseXI	GCAGC	1 cut(s)	681
Bsh1285I	CGRYCG	1 cut(s)	1475
BshFI	GGCC	2 cut(s)	27, 236
BshNI	GGYRCC	1 cut(s)	1410
BsiEI	CGRYCG	1 cut(s)	1475
BsiHKAI	GWGCWC	1 cut(s)	1499
BsiHKCI	CYCGRG	1 cut(s)	1515
BslFI	GGGAC	4 cut(s)	339, 857, 962, 1667
BsmFI	GGGAC	4 cut(s)	339, 857, 962, 1667
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	27, 236
BsoBI	CYCGRG	1 cut(s)	1515
Bsp1286I	GDGCHC	1 cut(s)	1499
Bsp1407I	TGTACA	1 cut(s)	1356
Bsp143I	GATC	7 cut(s)	424, 532, 893, 999, 1472, 1632, 1685
BspACI	CCGC	1 cut(s)	1287
BspANI	GGCC	2 cut(s)	27, 236
BspCNI	CTCAG	5 cut(s)	547, 802, 897, 1495, 1837
BspLI	GGNNCC	3 cut(s)	26, 1412, 1687
BspMI	ACCTGC	1 cut(s)	1546
BspPI	GGATC	5 cut(s)	888, 994, 1640, 1680, 1693
BspT107I	GGYRCC	1 cut(s)	1410
BsrDI	GCAATG	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	1356
BsrI	ACTGG	1 cut(s)	1434
BssECI	CCNNGG	2 cut(s)	40, 1373
BssMI	GATC	7 cut(s)	424, 532, 893, 999, 1472, 1632, 1685
BssNI	GRCGYC	1 cut(s)	440
BssSI	CACGAG	1 cut(s)	1252
BssT1I	CCWWGG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	1252
Bst4CI	ACNGT	3 cut(s)	602, 1660, 1837
Bst6I	CTCTTC	4 cut(s)	106, 962, 1622, 1814
BstACI	GRCGYC	1 cut(s)	440
BstAPI	GCANNNNNTGC	1 cut(s)	420
BstAUI	TGTACA	1 cut(s)	1356
BstBAI	YACGTR	1 cut(s)	186
BstDEI	CTNAG	7 cut(s)	226, 305, 555, 789, 905, 1482, 1845
BstDSI	CCRYGG	1 cut(s)	1373
BstF5I	GGATG	4 cut(s)	171, 1253, 1300, 1557
BstKTI	GATC	7 cut(s)	427, 535, 896, 1002, 1475, 1635, 1688
BstMBI	GATC	7 cut(s)	424, 532, 893, 999, 1472, 1632, 1685
BstMCI	CGRYCG	1 cut(s)	1475
BstMWI	GCNNNNNNNGC	2 cut(s)	420, 1046
BstNSI	RCATGY	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	681
BstX2I	RGATCY	3 cut(s)	893, 1632, 1685
BstXI	CCANNNNNNTGG	1 cut(s)	1330
BstYI	RGATCY	3 cut(s)	893, 1632, 1685
BsuRI	GGCC	2 cut(s)	27, 236
BtgI	CCRYGG	1 cut(s)	1373
BtgZI	GCGATG	1 cut(s)	1055
BtrI	CACGTC	1 cut(s)	1703
BtsCI	GGATG	4 cut(s)	171, 1253, 1300, 1557
BtsI	GCAGTG	1 cut(s)	1512
BtsIMutI	CAGTG	2 cut(s)	1441, 1512
BveI	ACCTGC	1 cut(s)	1546
Cfr13I	GGNCC	1 cut(s)	25
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	6 cut(s)	187, 385, 552, 664, 674, 1357
CviAII	CATG	2 cut(s)	219, 1324
CviJI	RGCY	9 cut(s)	14, 27, 236, 1049, 1085, 1351, 1425, 1481, 1497
CviKI_1	RGCY	9 cut(s)	14, 27, 236, 1049, 1085, 1351, 1425, 1481, 1497
CviQI	GTAC	6 cut(s)	187, 385, 552, 664, 674, 1357
DdeI	CTNAG	7 cut(s)	226, 305, 555, 789, 905, 1482, 1845
DpnI	GATC	7 cut(s)	426, 534, 895, 1001, 1474, 1634, 1687
DpnII	GATC	7 cut(s)	424, 532, 893, 999, 1472, 1632, 1685
DraI	TTTAAA	7 cut(s)	160, 367, 577, 640, 745, 829, 1881
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	4 cut(s)	106, 962, 1622, 1814
EarI	CTCTTC	4 cut(s)	106, 962, 1622, 1814
Ecl136II	GAGCTC	1 cut(s)	1497
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	1499
Eco53kI	GAGCTC	1 cut(s)	1497
Eco88I	CYCGRG	1 cut(s)	1515
EcoICRI	GAGCTC	1 cut(s)	1497
EcoO109I	RGGNCCY	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	1499
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	2 cut(s)	222, 1327
FalI	AAGNNNNNCTT	2 cut(s)	1409, 1441
FaqI	GGGAC	4 cut(s)	339, 857, 962, 1667
FatI	CATG	2 cut(s)	218, 1323
FauI	CCCGC	1 cut(s)	1280
FbaI	TGATCA	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	1132
Fnu4HI	GCNGC	1 cut(s)	695
FokI	GGATG	4 cut(s)	178, 1260, 1307, 1564
FriOI	GRGCYC	1 cut(s)	1499
Fsp4HI	GCNGC	1 cut(s)	695
FspBI	CTAG	3 cut(s)	29, 891, 1082
GluI	GCNGC	1 cut(s)	695
GsuI	CTGGAG	1 cut(s)	1020
HaeIII	GGCC	2 cut(s)	27, 236
HgaI	GACGC	1 cut(s)	429
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	2 cut(s)	222, 1327
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	3 cut(s)	1033, 1129, 1513
HphI	GGTGA	3 cut(s)	199, 1112, 1327
Hpy166II	GTNNAC	3 cut(s)	134, 397, 1133
Hpy188I	TCNGA	6 cut(s)	445, 792, 906, 999, 1294, 1485
Hpy188III	TCNNGA	2 cut(s)	1224, 1762
Hpy8I	GTNNAC	3 cut(s)	134, 397, 1133
Hpy99I	CGWCG	1 cut(s)	1504
HpyAV	CCTTC	6 cut(s)	887, 976, 999, 1119, 1411, 1445
HpyCH4III	ACNGT	3 cut(s)	602, 1660, 1837
HpyCH4IV	ACGT	3 cut(s)	99, 185, 1702
HpyCH4V	TGCA	9 cut(s)	104, 179, 216, 414, 435, 461, 1251, 1555, 1562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	420, 1046
HpyF3I	CTNAG	7 cut(s)	226, 305, 555, 789, 905, 1482, 1845
HpySE526I	ACGT	3 cut(s)	99, 185, 1702
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	2 cut(s)	222, 1327
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	7 cut(s)	424, 532, 893, 999, 1472, 1632, 1685
LmnI	GCTCC	1 cut(s)	44
Lsp1109I	GCAGC	1 cut(s)	681
LweI	GCATC	3 cut(s)	1238, 1420, 1542
MaeI	CTAG	3 cut(s)	29, 891, 1082
MaeII	ACGT	3 cut(s)	99, 185, 1702
MaeIII	GTNAC	4 cut(s)	205, 613, 1723, 1762
MalI	GATC	7 cut(s)	426, 534, 895, 1001, 1474, 1634, 1687
MboI	GATC	7 cut(s)	424, 532, 893, 999, 1472, 1632, 1685
MboII	GAAGA	8 cut(s)	123, 368, 680, 949, 1104, 1639, 1828, 1831
MflI	RGATCY	3 cut(s)	893, 1632, 1685
MhlI	GDGCHC	1 cut(s)	1499
MlsI	TGGCCA	1 cut(s)	236
MluNI	TGGCCA	1 cut(s)	236
MlyI	GAGTC	3 cut(s)	1027, 1138, 1507
MmeI	TCCRAC	1 cut(s)	1272
Mox20I	TGGCCA	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	1528
MscI	TGGCCA	1 cut(s)	236
MslI	CAYNNNNRTG	1 cut(s)	1328
Msp20I	TGGCCA	1 cut(s)	236
Mva1269I	GAATGC	1 cut(s)	414
MwoI	GCNNNNNNNGC	2 cut(s)	420, 1046
NdeII	GATC	7 cut(s)	424, 532, 893, 999, 1472, 1632, 1685
NlaIII	CATG	2 cut(s)	222, 1327
NlaIV	GGNNCC	3 cut(s)	26, 1412, 1687
NmuCI	GTSAC	3 cut(s)	205, 613, 1762
NspI	RCATGY	1 cut(s)	222
PciI	ACATGT	1 cut(s)	218
PctI	GAATGC	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	1528
PflFI	GACNNNGTC	1 cut(s)	755
PkrI	GCNGC	1 cut(s)	696
Ple19I	CGATCG	1 cut(s)	1475
PleI	GAGTC	3 cut(s)	1027, 1137, 1507
PpsI	GAGTC	3 cut(s)	1027, 1137, 1507
Ppu21I	YACGTR	1 cut(s)	186
PscI	ACATGT	1 cut(s)	218
PshBI	ATTAAT	2 cut(s)	594, 1829
Psp124BI	GAGCTC	1 cut(s)	1499
PspN4I	GGNNCC	3 cut(s)	26, 1412, 1687
PspPI	GGNCC	1 cut(s)	25
PsuI	RGATCY	3 cut(s)	893, 1632, 1685
PsyI	GACNNNGTC	1 cut(s)	755
PvuI	CGATCG	1 cut(s)	1475
RsaI	GTAC	6 cut(s)	188, 386, 553, 665, 675, 1358
RsaNI	GTAC	6 cut(s)	187, 385, 552, 664, 674, 1357
RseI	CAYNNNNRTG	1 cut(s)	1328
SacI	GAGCTC	1 cut(s)	1499
SatI	GCNGC	1 cut(s)	695
Sau3AI	GATC	7 cut(s)	424, 532, 893, 999, 1472, 1632, 1685
Sau96I	GGNCC	1 cut(s)	25
ScaI	AGTACT	1 cut(s)	553
SchI	GAGTC	3 cut(s)	1027, 1138, 1507
SduI	GDGCHC	1 cut(s)	1499
SfaNI	GCATC	3 cut(s)	1238, 1420, 1542
SmiMI	CAYNNNNRTG	1 cut(s)	1328
SsiI	CCGC	1 cut(s)	1287
SspI	AATATT	5 cut(s)	90, 172, 719, 818, 825
SspMI	CTAG	3 cut(s)	29, 891, 1082
SstI	GAGCTC	1 cut(s)	1499
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	3 cut(s)	602, 1660, 1837
TaiI	ACGT	3 cut(s)	102, 188, 1705
TaqI	TCGA	2 cut(s)	1223, 1428
TatI	WGTACW	3 cut(s)	551, 673, 1356
TscAI	CASTG	2 cut(s)	1441, 1512
TseFI	GTSAC	3 cut(s)	205, 613, 1762
TseI	GCWGC	1 cut(s)	694
Tsp45I	GTSAC	3 cut(s)	205, 613, 1762
TspDTI	ATGAA	4 cut(s)	141, 182, 719, 1767
TspGWI	ACGGA	3 cut(s)	787, 1193, 1754
TspRI	CASTG	2 cut(s)	1441, 1512
Tth111I	GACNNNGTC	1 cut(s)	755
VspI	ATTAAT	2 cut(s)	594, 1829
XapI	RAATTY	2 cut(s)	775, 1218
XceI	RCATGY	1 cut(s)	222
XmiI	GTMKAC	1 cut(s)	1132
XmnI	GAANNNNTTC	1 cut(s)	1528
XspI	CTAG	3 cut(s)	29, 891, 1082
ZrmI	AGTACT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.