Rh7DG393600

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002115
Physical Location & Seq
Reverse (-)
53966627 .. 53968487
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG393600.1

Sequence Viewer

Length: 624 bp
ATGGGGGTGGTTCGGTGGCGGGGAGGGGAATCGGAGGAGCAGTTTGACAGACGGAGAAAGGTAAGGAGGCAGAGGATTGAGAGCGCTGGCGACAGTGAAGACGAGGAAGGGATCGAGGCGGTGAGGGAGAAGCTCATGTTTGAATTCAAAACGGCGGCGAACAAGATGAAAGACAAGATTTTGAGAGGGGAGAAGGAAGAGGTGGAGGAGGACGACGACGAGCCAGCGTCGATTGCTGCTGCTGCTGTTACTGACATGACAGAGGCAGTGGAGGAGGAGGATGCTGAGGCTGTGGTGGCGGAGGAGGGGGGATCATCGCCGGTCCGAGGGGCTTCCGGTTCGGGTCTGGAGAAGAAGGATGGGCCCAAGGAAATGTGTAAGTTCTCACTCGCGTTAGGTCACCGCCCTCCCCATCGCCCTAAGAAGTGGCCTCGAGCGGTGCAAAAGCAATTGGATGTGATGTTGGAGAAACTGAAGTTTGAGAAACAAGAAGGAAGAGGAAGAGAGCGTGTTGGTGCTGAAACCAGGACCAAGGTTAAGCAGCAGCCACTTACTGCCAAACCCTCAACCACAACTCCCTCAAAAGTCCCAGAATGGAGGGAGCGTGAGGTAGTTCAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

207

Amino Acids

23.34

Weight (kDa)

5.75

Isoelectric Point (pI)

61.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 132 - 154 2.6e-07 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 437
AccII CGCG 1 cut(s) 392
AciI CCGC 6 cut(s) 19, 119, 155, 299, 403, 437
AclWI GGATC 2 cut(s) 119, 319
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 494
AfeI AGCGCT 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 2 cut(s) 143, 148
AjnI CCWGG 1 cut(s) 524
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AlwI GGATC 2 cut(s) 119, 319
Ama87I CYCGRG 1 cut(s) 432
Aor51HI AGCGCT 1 cut(s) 85
AoxI GGCC 2 cut(s) 362, 428
ApaI GGGCCC 1 cut(s) 366
ApeKI GCWGC 5 cut(s) 236, 239, 242, 541, 544
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 4 cut(s) 322, 362, 363, 528
AsuHPI GGTGA 2 cut(s) 133, 392
AvaI CYCGRG 1 cut(s) 432
AvaII GGWCC 2 cut(s) 322, 528
BaeGI GKGCMC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 5 cut(s) 223, 226, 229, 553, 556
BccI CCATC 2 cut(s) 353, 420
BceAI ACGGC 1 cut(s) 168
BciT130I CCWGG 1 cut(s) 526
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 6 cut(s) 156, 237, 240, 243, 542, 545
BlsI GCNGC 6 cut(s) 157, 238, 241, 244, 543, 546
Bme1390I CCNGG 1 cut(s) 526
Bme18I GGWCC 2 cut(s) 322, 528
BmeT110I CYCGRG 1 cut(s) 432
BmgT120I GGNCC 4 cut(s) 322, 362, 363, 528
BmiI GGNNCC 1 cut(s) 364
BmrFI CCNGG 1 cut(s) 526
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 368
Bpu10I CCTNAGC 1 cut(s) 285
BsaJI CCNNGG 3 cut(s) 325, 366, 531
BsaWI WCCGGW 1 cut(s) 335
BsaXI ACNNNNNCTCC 6 cut(s) 26, 56, 559, 589, 589, 619
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse118I RCCGGY 1 cut(s) 319
BseBI CCWGG 1 cut(s) 526
BseDI CCNNGG 3 cut(s) 325, 366, 531
BseGI GGATG 3 cut(s) 286, 364, 460
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 276
BseRI GAGGAG 5 cut(s) 50, 221, 287, 290, 317
BseSI GKGCMC 1 cut(s) 366
BseXI GCAGC 5 cut(s) 223, 226, 229, 553, 556
Bsh1236I CGCG 1 cut(s) 392
BshFI GGCC 2 cut(s) 364, 430
BsiHKCI CYCGRG 1 cut(s) 432
BsiSI CCGG 2 cut(s) 320, 336
BslFI GGGAC 1 cut(s) 572
BslI CCNNNNNNNGG 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 572
BsnI GGCC 2 cut(s) 364, 430
BsoBI CYCGRG 1 cut(s) 432
Bsp120I GGGCCC 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 2 cut(s) 111, 311
BspACI CCGC 6 cut(s) 19, 119, 155, 299, 403, 437
BspANI GGCC 2 cut(s) 364, 430
BspCNI CTCAG 1 cut(s) 277
BspFNI CGCG 1 cut(s) 392
BspLI GGNNCC 1 cut(s) 364
BspPI GGATC 2 cut(s) 119, 319
BsrBI CCGCTC 1 cut(s) 437
BsrFI RCCGGY 1 cut(s) 319
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 3 cut(s) 325, 366, 531
BssMI GATC 2 cut(s) 111, 311
BssT1I CCWWGG 2 cut(s) 366, 531
Bst2UI CCWGG 1 cut(s) 526
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 3 cut(s) 192, 490, 496
BstC8I GCNNGC 2 cut(s) 88, 225
BstDEI CTNAG 2 cut(s) 285, 420
BstEII GGTNACC 1 cut(s) 398
BstF5I GGATG 3 cut(s) 286, 364, 460
BstFNI CGCG 1 cut(s) 392
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 2 cut(s) 114, 314
BstMBI GATC 2 cut(s) 111, 311
BstMWI GCNNNNNNNGC 3 cut(s) 233, 242, 296
BstNI CCWGG 1 cut(s) 526
BstPI GGTNACC 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 524
BstSLI GKGCMC 1 cut(s) 366
BstUI CGCG 1 cut(s) 392
BstV1I GCAGC 5 cut(s) 223, 226, 229, 553, 556
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 2 cut(s) 364, 430
BtgZI GCGATG 2 cut(s) 300, 398
BtsCI GGATG 3 cut(s) 286, 364, 460
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 2 cut(s) 100, 273
Cac8I GCNNGC 2 cut(s) 88, 225
CfoI GCGC 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 4 cut(s) 322, 362, 363, 528
CpoI CGGWCCG 1 cut(s) 322
CseI GACGC 1 cut(s) 216
CspI CGGWCCG 1 cut(s) 322
CviAII CATG 2 cut(s) 136, 256
CviJI RGCY 8 cut(s) 133, 223, 290, 332, 364, 430, 547, 619
CviKI_1 RGCY 8 cut(s) 133, 223, 290, 332, 364, 430, 547, 619
DdeI CTNAG 2 cut(s) 285, 420
DpnI GATC 2 cut(s) 113, 313
DpnII GATC 2 cut(s) 111, 311
Eam1104I CTCTTC 3 cut(s) 192, 490, 496
EarI CTCTTC 3 cut(s) 192, 490, 496
EciI GGCGGA 1 cut(s) 314
Eco130I CCWWGG 2 cut(s) 366, 531
Eco24I GRGCYC 1 cut(s) 366
Eco47I GGWCC 2 cut(s) 322, 528
Eco47III AGCGCT 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 432
Eco91I GGTNACC 1 cut(s) 398
EcoO65I GGTNACC 1 cut(s) 398
EcoRI GAATTC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 524
EcoT14I CCWWGG 2 cut(s) 366, 531
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 2 cut(s) 366, 531
FaeI CATG 2 cut(s) 139, 259
FaiI YATR 2 cut(s) 137, 257
FaqI GGGAC 1 cut(s) 572
FatI CATG 2 cut(s) 135, 255
FauI CCCGC 1 cut(s) 12
Fnu4HI GCNGC 6 cut(s) 156, 237, 240, 243, 542, 545
FokI GGATG 3 cut(s) 293, 371, 467
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 6 cut(s) 156, 237, 240, 243, 542, 545
GlaI GCGC 1 cut(s) 85
GluI GCNGC 6 cut(s) 156, 237, 240, 243, 542, 545
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 2 cut(s) 364, 430
HapII CCGG 2 cut(s) 320, 336
HgaI GACGC 1 cut(s) 216
HhaI GCGC 1 cut(s) 86
Hin1II CATG 2 cut(s) 139, 259
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 1 cut(s) 29
HpaII CCGG 2 cut(s) 320, 336
HphI GGTGA 2 cut(s) 133, 392
Hpy188I TCNGA 2 cut(s) 34, 326
Hpy188III TCNNGA 1 cut(s) 347
Hpy99I CGWCG 3 cut(s) 218, 221, 232
HpyAV CCTTC 4 cut(s) 101, 187, 349, 485
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 442
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 242, 296
HpyF3I CTNAG 2 cut(s) 285, 420
Hsp92II CATG 2 cut(s) 139, 259
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 2 cut(s) 111, 311
LmnI GCTCC 2 cut(s) 37, 601
LpnPI CCDG 8 cut(s) 72, 237, 332, 333, 349, 511, 538, 603
Lsp1109I GCAGC 5 cut(s) 223, 226, 229, 553, 556
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 247, 398
MalI GATC 2 cut(s) 113, 313
MbiI CCGCTC 1 cut(s) 437
MboI GATC 2 cut(s) 111, 311
MboII GAAGA 5 cut(s) 110, 209, 364, 507, 513
MfeI CAATTG 1 cut(s) 449
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 2 cut(s) 143, 449
MmeI TCCRAC 1 cut(s) 444
MseI TTAA 2 cut(s) 537, 622
MspI CCGG 2 cut(s) 320, 336
MspR9I CCNGG 1 cut(s) 526
MunI CAATTG 1 cut(s) 449
MvaI CCWGG 1 cut(s) 526
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 3 cut(s) 233, 242, 296
NdeII GATC 2 cut(s) 111, 311
NlaIII CATG 2 cut(s) 139, 259
NlaIV GGNNCC 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 398
PaeR7I CTCGAG 1 cut(s) 432
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 6 cut(s) 157, 238, 241, 244, 543, 546
Psp6I CCWGG 1 cut(s) 524
PspEI GGTNACC 1 cut(s) 398
PspGI CCWGG 1 cut(s) 524
PspN4I GGNNCC 1 cut(s) 364
PspOMI GGGCCC 1 cut(s) 362
PspPI GGNCC 4 cut(s) 322, 362, 363, 528
PspXI VCTCGAGB 1 cut(s) 432
Rsr2I CGGWCCG 1 cut(s) 322
RsrII CGGWCCG 1 cut(s) 322
SaqAI TTAA 2 cut(s) 537, 622
SatI GCNGC 6 cut(s) 156, 237, 240, 243, 542, 545
Sau3AI GATC 2 cut(s) 111, 311
Sau96I GGNCC 4 cut(s) 322, 362, 363, 528
ScrFI CCNGG 1 cut(s) 526
SduI GDGCHC 1 cut(s) 366
SetI ASST 6 cut(s) 63, 135, 204, 400, 537, 612
SfaNI GCATC 1 cut(s) 271
Sfr274I CTCGAG 1 cut(s) 432
SinI GGWCC 2 cut(s) 322, 528
SlaI CTCGAG 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
Sse9I AATT 2 cut(s) 143, 449
SsiI CCGC 6 cut(s) 19, 119, 155, 299, 403, 437
StyD4I CCNGG 1 cut(s) 524
StyI CCWWGG 2 cut(s) 366, 531
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 3 cut(s) 114, 230, 433
TasI AATT 2 cut(s) 143, 449
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 537, 622
Tru9I TTAA 2 cut(s) 537, 622
TscAI CASTG 2 cut(s) 100, 273
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 5 cut(s) 236, 239, 242, 541, 544
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 2 cut(s) 100, 273
VpaK11BI GGWCC 2 cut(s) 322, 528
XapI RAATTY 1 cut(s) 143
XhoI CTCGAG 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.