Rw4G029260

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002115
Physical Location & Seq
Forward (+)
55948874 .. 55951637
2764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G029260.1

Sequence Viewer

Length: 966 bp
ATGGTGTATACAGGGGGGTCGGAGGAGAGAACGAGAGTGGTGGCGGCTAAGTCGTCGGCGGCGGCGGCGGGGATGAATTCCGAGAGAGCGGCGAAGCCTCTGCACAATTTCAGTTTGCCTTGGGATTTGAAGTGGGGGAACCAGAGGCACCTGCGGTGCATGAAGGTGGATTCCGATGGCGACGCGGCGGCGGATTTTGATCGGCGATCGGCGGTGGGGGTGGTTCGGCGGCGGGGAGGGGAATCGGAGGGGCAGTTCGACAGGCGGAGCAGGGTGAGGAGGCAGAGGATCGAGAGAGCCGGCGACGGCGAAGAGGAGGAGGGGATCGAGGCGGTGAGGGAGAAGCTCATGTTTGAATTCAAAACGGCGGCGGACAAGATGAAAGACGCGATTTTGAGAGGGGAGAAGGAAGAGGTGGAGGAGGAGGACGACCACGACCACGAGCCGGCGCCGGTTGCTGCTGCTGCTGTTGTTACTGACGTGACGGCGGCGGCGGAGGAGGAGGACGCTGAGGCTGTGGCTGCGGAGGAGGGGGGATCGTCGCCGGCGGCGGCGGCGGTGAGGCCGTGGAATCTGAGGACGAGGAGGGCGGCGTGCAAGGCTCCAATTGGCGGTGGCGGCGGCGGCAAGGGGTTGAAAATTGAGGAGAGGAAGACGAATTACTCGCCGTTGAGGAGTGAGGGAAACAATGGCGGCAAGTCGCCGAGGCTGGTCCGAGGGGCTTCCGGTTCGGGTCTGGAGAAGGACGGGCCCAAGGAAAGGCCCAAGTTCTCACTCACGCTCTCCAAGAAGGAGATCGATGAGGATTTCATACAGATGCTCGGCCACCGCCCTCCCCGCCGCCCCAAGAAGCGGCCCAGAGCGGTGCAGAAGCAATTGGATGCTTTGTTTCCCGGTATGTGGTTGACGGAGGTCTCAGCTGATTCGTACAAGGTTCCTGAGTTCCCTGAAAATGTCAAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

321

Amino Acids

35.16

Weight (kDa)

7.75

Isoelectric Point (pI)

67.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 261 - 310 2.5e-28 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 159
Acc36I ACCTGC 1 cut(s) 159
AccB1I GGYRCC 2 cut(s) 147, 448
AccBSI CCGCTC 2 cut(s) 89, 863
AccI GTMKAC 1 cut(s) 8
AccII CGCG 2 cut(s) 185, 389
AclWI GGATC 3 cut(s) 296, 332, 544
AcoI YGGCCR 1 cut(s) 823
AcsI RAATTY 2 cut(s) 76, 356
AcyI GRCGYC 1 cut(s) 449
AfaI GTAC 1 cut(s) 929
AfiI CCNNNNNNNGG 5 cut(s) 445, 611, 759, 852, 900
AgsI TTSAA 4 cut(s) 130, 356, 361, 637
AjiI CACGTC 1 cut(s) 481
AloI GAACNNNNNNTCC 2 cut(s) 239, 271
AluBI AGCT 2 cut(s) 346, 920
AluI AGCT 2 cut(s) 346, 920
Alw26I GTCTC 1 cut(s) 919
AlwI GGATC 3 cut(s) 296, 332, 544
AoxI GGCC 5 cut(s) 563, 749, 761, 823, 854
ApaI GGGCCC 1 cut(s) 753
ApeKI GCWGC 4 cut(s) 458, 461, 464, 521
ApoI RAATTY 2 cut(s) 76, 356
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 5 cut(s) 712, 749, 750, 762, 855
AsuC2I CCSGG 1 cut(s) 894
AsuHPI GGTGA 3 cut(s) 286, 346, 571
AvaII GGWCC 1 cut(s) 712
BaeGI GKGCMC 1 cut(s) 753
BanI GGYRCC 2 cut(s) 147, 448
BanII GRGCYC 1 cut(s) 753
BarI GAAGNNNNNNTAC 2 cut(s) 644, 676
BauI CACGAG 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 659
BbvCI CCTCAGC 1 cut(s) 510
BbvI GCAGC 4 cut(s) 445, 448, 451, 508
BccI CCATC 1 cut(s) 170
BceAI ACGGC 5 cut(s) 322, 381, 501, 550, 652
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BcnI CCSGG 1 cut(s) 894
BcoDI GTCTC 1 cut(s) 919
BfoI RGCGCY 1 cut(s) 452
BfuAI ACCTGC 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 894
Bme18I GGWCC 1 cut(s) 712
BmgBI CACGTC 1 cut(s) 481
BmgT120I GGNCC 5 cut(s) 712, 749, 750, 762, 855
BmiI GGNNCC 6 cut(s) 140, 149, 450, 603, 751, 936
BmrFI CCNGG 1 cut(s) 894
BmsI GCATC 2 cut(s) 807, 871
BoxI GACNNNNGTC 1 cut(s) 911
BpiI GAAGAC 1 cut(s) 659
BpmI CTGGAG 1 cut(s) 758
Bpu10I CCTNAGC 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 894
Bsa29I ATCGAT 1 cut(s) 798
BsaBI GATNNNNATC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 449
BsaI GGTCTC 1 cut(s) 919
BsaJI CCNNGG 5 cut(s) 119, 566, 704, 715, 753
BsaWI WCCGGW 1 cut(s) 725
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 5 cut(s) 445, 611, 759, 852, 900
Bse118I RCCGGY 4 cut(s) 299, 445, 451, 544
Bse8I GATNNNNATC 1 cut(s) 198
BseCI ATCGAT 1 cut(s) 798
BseDI CCNNGG 5 cut(s) 119, 566, 704, 715, 753
BseGI GGATG 2 cut(s) 78, 886
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 5 cut(s) 445, 611, 759, 852, 900
BseMII CTCAG 4 cut(s) 501, 566, 930, 930
BseSI GKGCMC 1 cut(s) 753
BseXI GCAGC 4 cut(s) 445, 448, 451, 508
BsgI GTGCAG 2 cut(s) 86, 887
Bsh1236I CGCG 2 cut(s) 185, 389
Bsh1285I CGRYCG 1 cut(s) 209
BshFI GGCC 5 cut(s) 565, 751, 763, 825, 856
BshNI GGYRCC 2 cut(s) 147, 448
BshVI ATCGAT 1 cut(s) 798
BsiEI CGRYCG 1 cut(s) 209
BsiSI CCGG 6 cut(s) 300, 446, 452, 545, 726, 894
BslI CCNNNNNNNGG 5 cut(s) 445, 611, 759, 852, 900
BsmAI GTCTC 1 cut(s) 919
BsnI GGCC 5 cut(s) 565, 751, 763, 825, 856
Bso31I GGTCTC 1 cut(s) 919
Bsp120I GGGCCC 1 cut(s) 749
Bsp1286I GDGCHC 1 cut(s) 753
Bsp143I GATC 6 cut(s) 199, 206, 288, 324, 536, 795
BspANI GGCC 5 cut(s) 565, 751, 763, 825, 856
BspCNI CTCAG 4 cut(s) 502, 567, 929, 931
BspDI ATCGAT 1 cut(s) 798
BspFNI CGCG 2 cut(s) 185, 389
BspLI GGNNCC 6 cut(s) 140, 149, 450, 603, 751, 936
BspMI ACCTGC 1 cut(s) 159
BspPI GGATC 3 cut(s) 296, 332, 544
BspT107I GGYRCC 2 cut(s) 147, 448
BspTNI GGTCTC 1 cut(s) 919
BsrBI CCGCTC 2 cut(s) 89, 863
BsrFI RCCGGY 4 cut(s) 299, 445, 451, 544
BssAI RCCGGY 4 cut(s) 299, 445, 451, 544
BssECI CCNNGG 5 cut(s) 119, 566, 704, 715, 753
BssMI GATC 6 cut(s) 199, 206, 288, 324, 536, 795
BssNAI GTATAC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 449
BssSI CACGAG 1 cut(s) 440
BssT1I CCWWGG 2 cut(s) 119, 753
Bst1107I GTATAC 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 440
Bst6I CTCTTC 2 cut(s) 306, 405
BstACI GRCGYC 1 cut(s) 449
BstC8I GCNNGC 4 cut(s) 301, 447, 546, 595
BstDEI CTNAG 5 cut(s) 48, 510, 575, 916, 939
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 2 cut(s) 78, 886
BstFNI CGCG 2 cut(s) 185, 389
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 6 cut(s) 202, 209, 291, 327, 539, 798
BstMAI GTCTC 1 cut(s) 919
BstMBI GATC 6 cut(s) 199, 206, 288, 324, 536, 795
BstMCI CGRYCG 1 cut(s) 209
BstMWI GCNNNNNNNGC 9 cut(s) 65, 455, 464, 521, 554, 599, 618, 624, 837
BstPAI GACNNNNGTC 1 cut(s) 911
BstSCI CCNGG 1 cut(s) 892
BstSLI GKGCMC 1 cut(s) 753
BstUI CGCG 2 cut(s) 185, 389
BstV1I GCAGC 4 cut(s) 445, 448, 451, 508
BstV2I GAAGAC 1 cut(s) 659
BstZ17I GTATAC 1 cut(s) 9
Bsu15I ATCGAT 1 cut(s) 798
BsuRI GGCC 5 cut(s) 565, 751, 763, 825, 856
BsuTUI ATCGAT 1 cut(s) 798
BtgI CCRYGG 1 cut(s) 566
BtrI CACGTC 1 cut(s) 481
BtsCI GGATG 2 cut(s) 78, 886
BveI ACCTGC 1 cut(s) 159
Cac8I GCNNGC 4 cut(s) 301, 447, 546, 595
CfoI GCGC 1 cut(s) 451
Cfr10I RCCGGY 4 cut(s) 299, 445, 451, 544
Cfr13I GGNCC 5 cut(s) 712, 749, 750, 762, 855
ClaI ATCGAT 1 cut(s) 798
CseI GACGC 3 cut(s) 191, 395, 515
Csp6I GTAC 1 cut(s) 928
CviAII CATG 3 cut(s) 160, 349, 963
CviQI GTAC 1 cut(s) 928
DdeI CTNAG 5 cut(s) 48, 510, 575, 916, 939
DinI GGCGCC 1 cut(s) 450
DpnI GATC 6 cut(s) 201, 208, 290, 326, 538, 797
DpnII GATC 6 cut(s) 199, 206, 288, 324, 536, 795
EaeI YGGCCR 1 cut(s) 823
Eam1104I CTCTTC 2 cut(s) 306, 405
EarI CTCTTC 2 cut(s) 306, 405
EciI GGCGGA 4 cut(s) 206, 280, 386, 509
Eco130I CCWWGG 2 cut(s) 119, 753
Eco24I GRGCYC 1 cut(s) 753
Eco31I GGTCTC 1 cut(s) 919
Eco47I GGWCC 1 cut(s) 712
EcoRI GAATTC 2 cut(s) 76, 356
EcoT14I CCWWGG 2 cut(s) 119, 753
EcoT38I GRGCYC 1 cut(s) 753
EgeI GGCGCC 1 cut(s) 450
EheI GGCGCC 1 cut(s) 450
ErhI CCWWGG 2 cut(s) 119, 753
FaeI CATG 3 cut(s) 163, 352, 966
FaiI YATR 6 cut(s) 9, 161, 350, 812, 899, 964
FatI CATG 3 cut(s) 159, 348, 962
FauI CCCGC 3 cut(s) 61, 225, 845
FblI GTMKAC 1 cut(s) 8
FokI GGATG 2 cut(s) 85, 893
FriOI GRGCYC 1 cut(s) 753
GlaI GCGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 758
HaeII RGCGCY 1 cut(s) 452
HaeIII GGCC 5 cut(s) 565, 751, 763, 825, 856
HapII CCGG 6 cut(s) 300, 446, 452, 545, 726, 894
HgaI GACGC 3 cut(s) 191, 395, 515
HhaI GCGC 1 cut(s) 451
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 3 cut(s) 163, 352, 966
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HincII GTYRAC 1 cut(s) 906
HindII GTYRAC 1 cut(s) 906
HinfI GANTC 4 cut(s) 170, 242, 571, 923
HpaII CCGG 6 cut(s) 300, 446, 452, 545, 726, 894
HphI GGTGA 3 cut(s) 286, 346, 571
Hpy166II GTNNAC 2 cut(s) 9, 906
Hpy188I TCNGA 6 cut(s) 22, 82, 175, 247, 576, 716
Hpy188III TCNNGA 4 cut(s) 292, 737, 938, 958
Hpy8I GTNNAC 2 cut(s) 9, 906
Hpy99I CGWCG 4 cut(s) 58, 185, 308, 544
HpyAV CCTTC 4 cut(s) 157, 400, 736, 784
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 4 cut(s) 103, 159, 597, 868
HpyF10VI GCNNNNNNNGC 9 cut(s) 65, 455, 464, 521, 554, 599, 618, 624, 837
HpyF3I CTNAG 5 cut(s) 48, 510, 575, 916, 939
HpySE526I ACGT 1 cut(s) 480
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 3 cut(s) 163, 352, 966
HspAI GCGC 1 cut(s) 449
KasI GGCGCC 1 cut(s) 448
KroI GCCGGC 3 cut(s) 299, 445, 544
KroNI GCCGGC 3 cut(s) 301, 447, 546
Kzo9I GATC 6 cut(s) 199, 206, 288, 324, 536, 795
LmnI GCTCC 2 cut(s) 267, 607
Lsp1109I GCAGC 4 cut(s) 445, 448, 451, 508
LweI GCATC 2 cut(s) 807, 871
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 2 cut(s) 472, 481
MalI GATC 6 cut(s) 201, 208, 290, 326, 538, 797
MbiI CCGCTC 2 cut(s) 89, 863
MboI GATC 6 cut(s) 199, 206, 288, 324, 536, 795
MboII GAAGA 3 cut(s) 323, 422, 664
MfeI CAATTG 2 cut(s) 606, 875
MhlI GDGCHC 1 cut(s) 753
MluCI AATT 7 cut(s) 76, 106, 356, 606, 639, 658, 875
Mly113I GGCGCC 1 cut(s) 449
MreI CGCCGGCG 1 cut(s) 544
MroNI GCCGGC 3 cut(s) 299, 445, 544
MslI CAYNNNNRTG 2 cut(s) 164, 815
MspA1I CMGCKG 1 cut(s) 920
MspI CCGG 6 cut(s) 300, 446, 452, 545, 726, 894
MspR9I CCNGG 1 cut(s) 894
MunI CAATTG 2 cut(s) 606, 875
MvnI CGCG 2 cut(s) 185, 389
MwoI GCNNNNNNNGC 9 cut(s) 65, 455, 464, 521, 554, 599, 618, 624, 837
NaeI GCCGGC 3 cut(s) 301, 447, 546
NarI GGCGCC 1 cut(s) 449
NciI CCSGG 1 cut(s) 894
NdeII GATC 6 cut(s) 199, 206, 288, 324, 536, 795
NgoMIV GCCGGC 3 cut(s) 299, 445, 544
NlaIII CATG 3 cut(s) 163, 352, 966
NlaIV GGNNCC 6 cut(s) 140, 149, 450, 603, 751, 936
NmeAIII GCCGAG 2 cut(s) 729, 801
NmuCI GTSAC 1 cut(s) 481
PaqCI CACCTGC 1 cut(s) 159
PdiI GCCGGC 3 cut(s) 301, 447, 546
PfeI GAWTC 4 cut(s) 170, 242, 571, 923
Ple19I CGATCG 1 cut(s) 209
PluTI GGCGCC 1 cut(s) 452
PshAI GACNNNNGTC 1 cut(s) 911
PspN4I GGNNCC 6 cut(s) 140, 149, 450, 603, 751, 936
PspOMI GGGCCC 1 cut(s) 749
PspPI GGNCC 5 cut(s) 712, 749, 750, 762, 855
PvuI CGATCG 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 1 cut(s) 929
RsaNI GTAC 1 cut(s) 928
RseI CAYNNNNRTG 2 cut(s) 164, 815
Sau3AI GATC 6 cut(s) 199, 206, 288, 324, 536, 795
Sau96I GGNCC 5 cut(s) 712, 749, 750, 762, 855
ScrFI CCNGG 1 cut(s) 894
SduI GDGCHC 1 cut(s) 753
SetI ASST 8 cut(s) 153, 168, 348, 417, 483, 915, 922, 936
SfaNI GCATC 2 cut(s) 807, 871
SfoI GGCGCC 1 cut(s) 450
SgrAI CRCCGGYG 1 cut(s) 544
SinI GGWCC 1 cut(s) 712
SmiMI CAYNNNNRTG 2 cut(s) 164, 815
Sse9I AATT 7 cut(s) 76, 106, 356, 606, 639, 658, 875
SspDI GGCGCC 1 cut(s) 448
StyD4I CCNGG 1 cut(s) 892
StyI CCWWGG 2 cut(s) 119, 753
TaiI ACGT 1 cut(s) 483
TaqI TCGA 4 cut(s) 258, 291, 327, 798
TasI AATT 7 cut(s) 76, 106, 356, 606, 639, 658, 875
TfiI GAWTC 4 cut(s) 170, 242, 571, 923
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 4 cut(s) 458, 461, 464, 521
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 4 cut(s) 89, 176, 395, 799
TspGWI ACGGA 1 cut(s) 923
VpaK11BI GGWCC 1 cut(s) 712
XapI RAATTY 2 cut(s) 76, 356
XmiI GTMKAC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.