Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002115

Physical Location & Seq

Genomic Coordinates Reverse (-)

45220632 .. 45223425

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0279400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTTGGATGATCAGGACTCGTTCACGCGGTGCGTTAAGTCGAATCCTTCGGAGCCGTGGAATTGGAATATCTATTTGTTCCCCTTGTGGTGTTTCGGAGTGGTGATTCGATACTTTGTTCTATTTCCGGCAAGGGTACTGGTCTTGACTATTGGATGGATAATTTTCCTTTCGGCATTCATTCCTGTGCACTTCCTACTCAAAGGCCATGAAAAATTGAGAAAAAATTTAGAGAGATGGTTGGTGGAGTTAATGTGTAGCTTCTTTGTTGCATCTTGGACTGGGGTTGTGAAGTACCATGGACCAAAGCCTAGTATGATGCCAAAGCAGGTTTTTGTGGCCAATCATACTTCTATGATTGATTTCATCATCCCGGAACAAATGACGCATTTGCTGCAGTCCTTCACAATGCATCTGCTACAGCTTATGACATCATGGGCTGTTGTTTGTGATGTGTGGTATTTGGAGCCCGAAAATATGAAGCTTGGGGAGACTGCCATTGAATTTGCAGAGAGGGTCAGGGACATAATTTCTGTTCGAGCAGGACTTAAGAAGGTCCCGTTATTTCAGGCTATGGAGTATTTATTAGTGTGTAGGGAGCAAGGAGGTAGTTCTTCACCAAGAGAGTTCTACAACTTTTTGACTAAATTTCAAAAGGCATCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

222

Amino Acids

26.01

Weight (kDa)

8.8

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25370 AT1G25370 AT1G68340 AT1G68340 AT1G68340
fragaria_vesca	FvH4_4g27050
malus_domestica	MD13G1039500.v1.1 MD16G1040400.v1.1
prunus_persica	Prupe.1G313700_v2.0.a1 Prupe.1G313700_v2.0.a1
pyrus_communis	pycom05g23430 pycom13g03400 pycom13g29000 pycom15g37110 pycom16g03510 pycom17g22390
rosa_chinensis	RchiOBHm_Chr2g0122051 RchiOBHm_Chr4g0434851 RchiOBHm_Chr5g0054211
rosa_laevigata	RLG00000001525 RLG00000006641 RLG00000020224
rosa_multiflora	Rmu_sc0000674.1_g000025 Rmu_sc0002398.1_g000003 Rmu_sc0003726.1_g000003 Rmu_sc0005624.1_g000003 Rmu_sc0009656.1_g000005
rosa_roxburghii	Rroxscaffold_156G00440310 Rroxscaffold_5G00342830 Rroxscaffold_5G00376060 Rroxscaffold_5G00383210
rosa_rugosa	Rorug04G0279400 Rorug04G0279500 Rorug04G0279600
rosa_samantha	Rh1AG099900 Rh2BG456800 Rh4CG259900 Rh4CG358400 Rh4DG337900 Rh7CG341700 Rh7CG453800 Rh7DG393600
rosa_wichuraiana	Rw4G029260 Rw7G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AccII	CGCG	1 cut(s)	28
AciI	CCGC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	3 cut(s)	226, 503, 647
AdeI	CACNNNGTG	1 cut(s)	30
AfaI	GTAC	2 cut(s)	138, 296
AflII	CTTAAG	1 cut(s)	548
AgsI	TTSAA	2 cut(s)	503, 653
AluBI	AGCT	3 cut(s)	261, 424, 484
AluI	AGCT	3 cut(s)	261, 424, 484
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	485
Alw44I	GTGCAC	1 cut(s)	188
AoxI	GGCC	2 cut(s)	205, 339
ApaLI	GTGCAC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	3 cut(s)	226, 503, 647
AspS9I	GGNCC	2 cut(s)	302, 556
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	115, 609
AvaII	GGWCC	2 cut(s)	302, 556
BaeGI	GKGCMC	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	381
BccI	CCATC	2 cut(s)	150, 231
BceAI	ACGGC	1 cut(s)	40
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	2 cut(s)	312, 663
BfmI	CTRYAG	2 cut(s)	395, 419
BfrI	CTTAAG	1 cut(s)	548
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	2 cut(s)	302, 556
BmgT120I	GGNCC	2 cut(s)	302, 556
BmiI	GGNNCC	3 cut(s)	54, 468, 558
BmrFI	CCNGG	1 cut(s)	374
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	3 cut(s)	281, 309, 421
BmuI	ACTGGG	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	56, 298
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bse1I	ACTGG	2 cut(s)	144, 286
BseDI	CCNNGG	2 cut(s)	56, 298
BseGI	GGATG	3 cut(s)	13, 161, 369
BseNI	ACTGG	2 cut(s)	144, 286
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	207, 341
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	128, 374
BslFI	GGGAC	2 cut(s)	536, 542
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	2 cut(s)	536, 542
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	207, 341
Bsp1286I	GDGCHC	2 cut(s)	192, 471
Bsp143I	GATC	1 cut(s)	10
Bsp19I	CCATGG	1 cut(s)	298
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	2 cut(s)	207, 341
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	3 cut(s)	54, 468, 558
BspMAI	CTGCAG	1 cut(s)	399
BspMI	ACCTGC	1 cut(s)	319
BspTI	CTTAAG	1 cut(s)	548
BsrI	ACTGG	2 cut(s)	144, 286
BssECI	CCNNGG	2 cut(s)	56, 298
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	298
BstAFI	CTTAAG	1 cut(s)	548
BstAPI	GCANNNNNTGC	1 cut(s)	394
BstDSI	CCRYGG	2 cut(s)	56, 298
BstF5I	GGATG	3 cut(s)	13, 161, 369
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	2 cut(s)	395, 419
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	207, 341
BtgI	CCRYGG	2 cut(s)	56, 298
BtsCI	GGATG	3 cut(s)	13, 161, 369
BveI	ACCTGC	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	302, 556
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	137, 295
CviAII	CATG	3 cut(s)	209, 299, 435
CviQI	GTAC	2 cut(s)	137, 295
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
DraIII	CACNNNGTG	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	471
Eco47I	GGWCC	2 cut(s)	302, 556
EcoO109I	RGGNCCY	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	298
EcoT22I	ATGCAT	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	3 cut(s)	212, 302, 438
FaqI	GGGAC	2 cut(s)	536, 542
FatI	CATG	3 cut(s)	208, 298, 434
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	3 cut(s)	20, 168, 356
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	1 cut(s)	395
FspBI	CTAG	2 cut(s)	312, 663
GluI	GCNGC	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	207, 341
HapII	CCGG	2 cut(s)	128, 374
HgaI	GACGC	1 cut(s)	394
Hin1II	CATG	3 cut(s)	212, 302, 438
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	3 cut(s)	17, 43, 106
HpaII	CCGG	2 cut(s)	128, 374
HphI	GGTGA	2 cut(s)	115, 609
Hpy166II	GTNNAC	2 cut(s)	24, 190
Hpy188I	TCNGA	2 cut(s)	52, 98
Hpy188III	TCNNGA	2 cut(s)	14, 145
Hpy8I	GTNNAC	2 cut(s)	24, 190
HpyAV	CCTTC	3 cut(s)	57, 412, 547
HpyCH4V	TGCA	5 cut(s)	190, 272, 397, 412, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
Hsp92II	CATG	3 cut(s)	212, 302, 438
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	3 cut(s)	52, 466, 598
LpnPI	CCDG	9 cut(s)	125, 141, 198, 267, 314, 387, 505, 528, 554
Lsp1109I	GCAGC	1 cut(s)	381
LweI	GCATC	3 cut(s)	281, 309, 421
MaeI	CTAG	2 cut(s)	312, 663
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	1 cut(s)	606
MhlI	GDGCHC	2 cut(s)	192, 471
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	7 cut(s)	61, 162, 215, 226, 503, 528, 647
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	11
MnlI	CCTC	2 cut(s)	507, 599
Mox20I	TGGCCA	1 cut(s)	341
Mph1103I	ATGCAT	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	3 cut(s)	36, 251, 549
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	341
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	2 cut(s)	128, 374
MspR9I	CCNGG	1 cut(s)	374
Mva1269I	GAATGC	1 cut(s)	176
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	394
NciI	CCSGG	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	212, 302, 438
NlaIV	GGNNCC	3 cut(s)	54, 468, 558
NsiI	ATGCAT	1 cut(s)	414
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	43, 106
PfoI	TCCNGGA	1 cut(s)	372
PkrI	GCNGC	1 cut(s)	396
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	556
Psp5II	RGGWCCY	1 cut(s)	556
PspN4I	GGNNCC	3 cut(s)	54, 468, 558
PspPI	GGNCC	2 cut(s)	302, 556
PspPPI	RGGWCCY	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	399
RsaI	GTAC	2 cut(s)	138, 296
RsaNI	GTAC	2 cut(s)	137, 295
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	36, 251, 549
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	2 cut(s)	302, 556
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	192, 471
SetI	ASST	7 cut(s)	263, 333, 426, 486, 558, 610, 668
SfaNI	GCATC	3 cut(s)	281, 309, 421
SfcI	CTRYAG	2 cut(s)	395, 419
SinI	GGWCC	2 cut(s)	302, 556
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	7 cut(s)	61, 162, 215, 226, 503, 528, 647
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	2 cut(s)	312, 663
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	298
TaqI	TCGA	3 cut(s)	41, 109, 538
TasI	AATT	7 cut(s)	61, 162, 215, 226, 503, 528, 647
TfiI	GAWTC	2 cut(s)	43, 106
Tru1I	TTAA	3 cut(s)	36, 251, 549
Tru9I	TTAA	3 cut(s)	36, 251, 549
TseI	GCWGC	1 cut(s)	394
TspDTI	ATGAA	4 cut(s)	169, 225, 355, 494
Vha464I	CTTAAG	1 cut(s)	548
VneI	GTGCAC	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	302, 556
XapI	RAATTY	3 cut(s)	226, 503, 647
XspI	CTAG	2 cut(s)	312, 663
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.