Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000674.1

Orthogroup ID

OG0002115

Physical Location & Seq

Genomic Coordinates Reverse (-)

132573 .. 133314

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000674.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgaaactggatttcgatggtgaagcggctgcgccgtttgatcggcgatcagctgtggaggtggttcggtggccgggaggggaatcggagaggcagttcaacaggcgaagcagggtaaggaggcagaggatcgagagcaccagcgacagcaaagaggatgatgggatcgaggcggtgagggataatgaaagactcgattttgagaggggagaaggaagagtggcggtggaggaggaggacgctgaggctgtggcggcggatgaggggaagaagacatgggtgctgggtgcccagagtagttttctaggtgcagaaagattaaaattttttttttatcatgtcacccaactttcgttttgggttcgtctgccgggagttgagtgtgaagaacatggatttgtagcaagaattggagaggatgatggcagcgttggtgatggtttgggcggaggagaaggagaggagagagagaagaagaagaagaagactgaggttgaagaagaagaagaagaaaagaagaaaaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

176

Amino Acids

20.0

Weight (kDa)

4.94

Isoelectric Point (pI)

64.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25370 AT1G25370 AT1G68340 AT1G68340 AT1G68340
fragaria_vesca	FvH4_4g27050
malus_domestica	MD13G1039500.v1.1 MD16G1040400.v1.1
prunus_persica	Prupe.1G313700_v2.0.a1 Prupe.1G313700_v2.0.a1
pyrus_communis	pycom05g23430 pycom13g03400 pycom13g29000 pycom15g37110 pycom16g03510 pycom17g22390
rosa_chinensis	RchiOBHm_Chr2g0122051 RchiOBHm_Chr4g0434851 RchiOBHm_Chr5g0054211
rosa_laevigata	RLG00000001525 RLG00000006641 RLG00000020224
rosa_multiflora	Rmu_sc0000674.1_g000025 Rmu_sc0002398.1_g000003 Rmu_sc0003726.1_g000003 Rmu_sc0005624.1_g000003 Rmu_sc0009656.1_g000005
rosa_roxburghii	Rroxscaffold_156G00440310 Rroxscaffold_5G00342830 Rroxscaffold_5G00376060 Rroxscaffold_5G00383210
rosa_rugosa	Rorug04G0279400 Rorug04G0279500 Rorug04G0279600
rosa_samantha	Rh1AG099900 Rh2BG456800 Rh4CG259900 Rh4CG358400 Rh4DG337900 Rh7CG341700 Rh7CG453800 Rh7DG393600
rosa_wichuraiana	Rw4G029260 Rw7G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	287
AciI	CCGC	6 cut(s)	26, 173, 224, 254, 257, 447
AclWI	GGATC	2 cut(s)	137, 173
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	100, 497
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw21I	GWGCWC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	137, 173
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	2 cut(s)	29, 426
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	34
AsuC2I	CCSGG	2 cut(s)	75, 372
AsuHPI	GGTGA	4 cut(s)	32, 187, 334, 446
BaeGI	GKGCMC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	278, 491
Bbv12I	GWGCWC	1 cut(s)	140
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	16, 438
BccI	CCATC	4 cut(s)	11, 155, 416, 431
BceAI	ACGGC	1 cut(s)	19
BcnI	CCSGG	2 cut(s)	75, 372
BfaI	CTAG	1 cut(s)	305
BisI	GCNGC	4 cut(s)	27, 30, 255, 427
BlsI	GCNGC	4 cut(s)	28, 31, 256, 428
Bme1390I	CCNGG	2 cut(s)	75, 372
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	2 cut(s)	75, 372
BpiI	GAAGAC	2 cut(s)	278, 491
Bpu10I	CCTNAGC	1 cut(s)	243
BpuMI	CCSGG	2 cut(s)	75, 372
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse1I	ACTGG	1 cut(s)	12
BseGI	GGATG	3 cut(s)	163, 265, 424
BseMII	CTCAG	2 cut(s)	234, 480
BseNI	ACTGG	1 cut(s)	12
BseRI	GAGGAG	4 cut(s)	245, 248, 465, 476
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	2 cut(s)	16, 438
BseYI	CCCAGC	1 cut(s)	283
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	73
BshNI	GGYRCC	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	74, 371
BsnI	GGCC	1 cut(s)	73
Bsp1286I	GDGCHC	2 cut(s)	140, 292
Bsp143I	GATC	4 cut(s)	40, 47, 129, 165
BspACI	CCGC	6 cut(s)	26, 173, 224, 254, 257, 447
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	2 cut(s)	235, 481
BspLI	GGNNCC	1 cut(s)	289
BspPI	GGATC	2 cut(s)	137, 173
BspT107I	GGYRCC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	12
BssMI	GATC	4 cut(s)	40, 47, 129, 165
Bst6I	CTCTTC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	243, 489
BstF5I	GGATG	3 cut(s)	163, 265, 424
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	4 cut(s)	43, 50, 132, 168
BstMBI	GATC	4 cut(s)	40, 47, 129, 165
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	73, 370
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	2 cut(s)	16, 438
BstV2I	GAAGAC	2 cut(s)	278, 491
BsuRI	GGCC	1 cut(s)	73
BtsCI	GGATG	3 cut(s)	163, 265, 424
CfoI	GCGC	1 cut(s)	34
CseI	GACGC	1 cut(s)	248
CviAII	CATG	3 cut(s)	276, 338, 392
CviJI	RGCY	4 cut(s)	29, 53, 73, 248
CviKI_1	RGCY	4 cut(s)	29, 53, 73, 248
DdeI	CTNAG	2 cut(s)	243, 489
DpnI	GATC	4 cut(s)	42, 49, 131, 167
DpnII	GATC	4 cut(s)	40, 47, 129, 165
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
EciI	GGCGGA	2 cut(s)	272, 462
FaeI	CATG	3 cut(s)	279, 341, 395
FaiI	YATR	3 cut(s)	277, 339, 393
FatI	CATG	3 cut(s)	275, 337, 391
Fnu4HI	GCNGC	4 cut(s)	27, 30, 255, 427
FokI	GGATG	3 cut(s)	170, 272, 431
Fsp4HI	GCNGC	4 cut(s)	27, 30, 255, 427
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	4 cut(s)	27, 30, 255, 427
GsaI	CCCAGC	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	2 cut(s)	74, 371
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	3 cut(s)	279, 341, 395
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	83, 192
HpaII	CCGG	2 cut(s)	74, 371
HphI	GGTGA	4 cut(s)	32, 187, 334, 446
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	206, 449
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	243, 489
Hsp92II	CATG	3 cut(s)	279, 341, 395
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	4 cut(s)	40, 47, 129, 165
LpnPI	CCDG	7 cut(s)	87, 88, 97, 154, 269, 305, 384
Lsp1109I	GCAGC	2 cut(s)	16, 438
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	4 cut(s)	42, 49, 131, 167
MboI	GATC	4 cut(s)	40, 47, 129, 165
MhlI	GDGCHC	2 cut(s)	140, 292
MluCI	AATT	2 cut(s)	323, 408
MlyI	GAGTC	1 cut(s)	186
MseI	TTAA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	2 cut(s)	74, 371
MspR9I	CCNGG	2 cut(s)	75, 372
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	2 cut(s)	75, 372
NdeII	GATC	4 cut(s)	40, 47, 129, 165
NlaIII	CATG	3 cut(s)	279, 341, 395
NlaIV	GGNNCC	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	4 cut(s)	28, 31, 256, 428
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	4 cut(s)	27, 30, 255, 427
Sau3AI	GATC	4 cut(s)	40, 47, 129, 165
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	2 cut(s)	75, 372
SduI	GDGCHC	2 cut(s)	140, 292
SetI	ASST	4 cut(s)	55, 63, 310, 495
Sse9I	AATT	2 cut(s)	323, 408
SsiI	CCGC	6 cut(s)	26, 173, 224, 254, 257, 447
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	73, 370
TaqI	TCGA	4 cut(s)	15, 132, 168, 195
TasI	AATT	2 cut(s)	323, 408
TauI	GCSGC	2 cut(s)	29, 257
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	29, 426
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	2 cut(s)	17, 201
XapI	RAATTY	1 cut(s)	323
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.