Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000156

Orthogroup ID

OG0002115

Physical Location & Seq

Genomic Coordinates Forward (+)

31551 .. 37367

Gene Structure 5817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_156G00440310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGAAGGTCGGTACCGGTGTTCGGCATGCGGCTTGCGGCGATGATTGGTCGTGGGTTTGCTTGGGATTGCATTGATCCGATGGTGGTGATGACCTCGGGGAAGCCACCTGTACCTCTTCTCTTCTCTACCTTGTCTGTAGACAATCAAAACCAGCTCAACCCTTCACATAACCGCTTCGTCCGTGAAAACCAAAGCCACGGGGATGACAAGAACGAACCGAGAATATTAACCAAGAGTTTCGCTTTGCCGCTTGAGGAAGAGAGCAACCAAGAGTTTGAGGCTCTTCGATTGAAAACCCGAAAAGTAATGGAGATGTTCATGAGAGACAAATCGATTGAAAACCAAGAAAGTAAAAGCCCAAACAGATTGATTAGAACCTTGCTCCGTCGTCTCCGATCTTTCTCCGCCGCCTCCTCCGAGCCTCTCGGTGCTGGTCCTCCCTCTACAAGCTTGCCATCTTCGCCCCGCCTCCTCCACTCCTGTGTCCTCTTTGAGAATTCCGATTTACGCCTCCAATGCGATCTCTACCATATGACAGATTACCACCCCCAATCCCAATTGGAGCCCTCATCCGACCAACTTCACCAACCACCACCCCCAAATCCCAATCGGCCGATGACATTTGATGTTTTGCTTCTCTTCAATGTGAACACACCCAATCACAATCACAAACCCAATAACCGAACATCAACCATCCTCAATATCACACACTCAGAATTTACCACAATAAAAAAACTAATCTTGAGCAGCAAAATGATGCATCCGGCGAGATATATTGTGAGTTGGTTGCGCCGGAAGATGAGAGATGCTGGGCGGAGAAGAAGGAGATCGGTTTTAGCGGAGAAGAAGACATGGGCGTCACGGTGCCCAAAGCAGTTTTCTAGGTGCAGAAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

34.59

Weight (kDa)

10.3

Isoelectric Point (pI)

66.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25370 AT1G25370 AT1G68340 AT1G68340 AT1G68340
fragaria_vesca	FvH4_4g27050
malus_domestica	MD13G1039500.v1.1 MD16G1040400.v1.1
prunus_persica	Prupe.1G313700_v2.0.a1 Prupe.1G313700_v2.0.a1
pyrus_communis	pycom05g23430 pycom13g03400 pycom13g29000 pycom15g37110 pycom16g03510 pycom17g22390
rosa_chinensis	RchiOBHm_Chr2g0122051 RchiOBHm_Chr4g0434851 RchiOBHm_Chr5g0054211
rosa_laevigata	RLG00000001525 RLG00000006641 RLG00000020224
rosa_multiflora	Rmu_sc0000674.1_g000025 Rmu_sc0002398.1_g000003 Rmu_sc0003726.1_g000003 Rmu_sc0005624.1_g000003 Rmu_sc0009656.1_g000005
rosa_roxburghii	Rroxscaffold_156G00440310 Rroxscaffold_5G00342830 Rroxscaffold_5G00376060 Rroxscaffold_5G00383210
rosa_rugosa	Rorug04G0279400 Rorug04G0279500 Rorug04G0279600
rosa_samantha	Rh1AG099900 Rh2BG456800 Rh4CG259900 Rh4CG358400 Rh4DG337900 Rh7CG341700 Rh7CG453800 Rh7DG393600
rosa_wichuraiana	Rw4G029260 Rw7G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	859
Acc65I	GGTACC	1 cut(s)	13
AccB1I	GGYRCC	2 cut(s)	13, 867
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	9 cut(s)	31, 38, 175, 251, 408, 411, 469, 817, 842
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	614
AcsI	RAATTY	2 cut(s)	499, 719
AcyI	GRCGYC	1 cut(s)	860
AfaI	GTAC	2 cut(s)	15, 114
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgeI	ACCGGT	1 cut(s)	16
AgsI	TTSAA	3 cut(s)	295, 341, 646
AjuI	GAANNNNNNNTTGG	2 cut(s)	865, 897
AleI	CACNNNNGTG	1 cut(s)	483
AluBI	AGCT	2 cut(s)	157, 453
AluI	AGCT	2 cut(s)	157, 453
Alw26I	GTCTC	2 cut(s)	321, 398
AlwI	GGATC	1 cut(s)	71
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	1 cut(s)	614
ApeKI	GCWGC	1 cut(s)	750
ApoI	RAATTY	2 cut(s)	499, 719
AsiGI	ACCGGT	1 cut(s)	16
Asp718I	GGTACC	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	795
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	100, 578
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	872
BaeI	ACNNNNGTAYC	1 cut(s)	38
BanI	GGYRCC	2 cut(s)	13, 867
BanII	GRGCYC	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	857
BbvI	GCAGC	1 cut(s)	762
BccI	CCATC	3 cut(s)	76, 466, 704
BcoDI	GTCTC	2 cut(s)	321, 398
BfaI	CTAG	1 cut(s)	885
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	5 cut(s)	32, 39, 251, 411, 751
BlsI	GCNGC	5 cut(s)	33, 40, 252, 412, 752
Bme18I	GGWCC	1 cut(s)	437
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	3 cut(s)	15, 567, 869
BmsI	GCATC	3 cut(s)	750, 772, 799
BpiI	GAAGAC	1 cut(s)	857
BpuEI	CTTGAG	2 cut(s)	275, 766
Bsa29I	ATCGAT	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	860
BsaJI	CCNNGG	2 cut(s)	96, 199
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	16
BseCI	ATCGAT	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	96, 199
BseGI	GGATG	4 cut(s)	211, 572, 696, 763
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	729
BseRI	GAGGAG	2 cut(s)	406, 464
BseSI	GKGCMC	1 cut(s)	872
BseX3I	CGGCCG	1 cut(s)	614
BseXI	GCAGC	1 cut(s)	762
BseYI	CCCAGC	1 cut(s)	812
Bsh1285I	CGRYCG	1 cut(s)	617
BshFI	GGCC	1 cut(s)	616
BshNI	GGYRCC	2 cut(s)	13, 867
BshTI	ACCGGT	1 cut(s)	16
BshVI	ATCGAT	1 cut(s)	335
BsiEI	CGRYCG	1 cut(s)	617
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	17, 767, 796
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	2 cut(s)	321, 398
BsmBI	CGTCTC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	616
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	570, 872
Bsp143I	GATC	4 cut(s)	76, 398, 523, 830
BspACI	CCGC	9 cut(s)	31, 38, 175, 251, 408, 411, 469, 817, 842
BspANI	GGCC	1 cut(s)	616
BspCNI	CTCAG	1 cut(s)	728
BspDI	ATCGAT	1 cut(s)	335
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	15, 567, 869
BspPI	GGATC	1 cut(s)	71
BspQI	GCTCTTC	1 cut(s)	291
BspT107I	GGYRCC	2 cut(s)	13, 867
BsrFI	RCCGGY	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	96, 199
BssMI	GATC	4 cut(s)	76, 398, 523, 830
BssNI	GRCGYC	1 cut(s)	860
Bst4CI	ACNGT	1 cut(s)	867
Bst6I	CTCTTC	5 cut(s)	123, 128, 255, 291, 647
BstACI	GRCGYC	1 cut(s)	860
BstC8I	GCNNGC	3 cut(s)	29, 36, 455
BstDEI	CTNAG	1 cut(s)	715
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	4 cut(s)	211, 572, 696, 763
BstHHI	GCGC	1 cut(s)	795
BstKTI	GATC	4 cut(s)	79, 401, 526, 833
BstMAI	GTCTC	2 cut(s)	321, 398
BstMBI	GATC	4 cut(s)	76, 398, 523, 830
BstMCI	CGRYCG	1 cut(s)	617
BstMWI	GCNNNNNNNGC	2 cut(s)	463, 519
BstNSI	RCATGY	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	872
BstV1I	GCAGC	1 cut(s)	762
BstV2I	GAAGAC	1 cut(s)	857
BstZI	CGGCCG	1 cut(s)	614
Bsu15I	ATCGAT	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	616
BsuTUI	ATCGAT	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	199
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	4 cut(s)	211, 572, 696, 763
Cac8I	GCNNGC	3 cut(s)	29, 36, 455
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	1 cut(s)	795
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	437
ClaI	ATCGAT	1 cut(s)	335
CseI	GACGC	1 cut(s)	849
Csp6I	GTAC	2 cut(s)	14, 113
CspAI	ACCGGT	1 cut(s)	16
CviAII	CATG	3 cut(s)	28, 322, 855
CviQI	GTAC	2 cut(s)	14, 113
DdeI	CTNAG	1 cut(s)	715
DpnI	GATC	4 cut(s)	78, 400, 525, 832
DpnII	GATC	4 cut(s)	76, 398, 523, 830
DrdI	GACNNNNNNGTC	1 cut(s)	859
DseDI	GACNNNNNNGTC	1 cut(s)	859
EaeI	YGGCCR	1 cut(s)	614
EagI	CGGCCG	1 cut(s)	614
Eam1104I	CTCTTC	5 cut(s)	123, 128, 255, 291, 647
EarI	CTCTTC	5 cut(s)	123, 128, 255, 291, 647
EciI	GGCGGA	2 cut(s)	397, 832
EclXI	CGGCCG	1 cut(s)	614
Eco24I	GRGCYC	1 cut(s)	570
Eco47I	GGWCC	1 cut(s)	437
Eco52I	CGGCCG	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	499
EcoT22I	ATGCAT	1 cut(s)	765
EcoT38I	GRGCYC	1 cut(s)	570
Esp3I	CGTCTC	1 cut(s)	398
FaeI	CATG	3 cut(s)	31, 325, 858
FaiI	YATR	7 cut(s)	29, 171, 323, 534, 536, 777, 856
FatI	CATG	3 cut(s)	27, 321, 854
FauI	CCCGC	1 cut(s)	476
FauNDI	CATATG	1 cut(s)	534
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	32, 39, 251, 411, 751
FokI	GGATG	4 cut(s)	218, 559, 683, 750
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	5 cut(s)	32, 39, 251, 411, 751
FspBI	CTAG	1 cut(s)	885
GlaI	GCGC	1 cut(s)	794
GluI	GCNGC	5 cut(s)	32, 39, 251, 411, 751
GsaI	CCCAGC	1 cut(s)	816
HaeIII	GGCC	1 cut(s)	616
HapII	CCGG	3 cut(s)	17, 767, 796
HgaI	GACGC	1 cut(s)	849
HhaI	GCGC	1 cut(s)	795
Hin1I	GRCGYC	1 cut(s)	860
Hin1II	CATG	3 cut(s)	31, 325, 858
Hin6I	GCGC	1 cut(s)	793
HinP1I	GCGC	1 cut(s)	793
HindIII	AAGCTT	1 cut(s)	451
HpaII	CCGG	3 cut(s)	17, 767, 796
HphI	GGTGA	2 cut(s)	100, 578
Hpy166II	GTNNAC	2 cut(s)	142, 652
Hpy188I	TCNGA	6 cut(s)	81, 398, 421, 505, 577, 718
Hpy188III	TCNNGA	2 cut(s)	322, 745
Hpy8I	GTNNAC	2 cut(s)	142, 652
Hpy99I	CGWCG	1 cut(s)	393
HpyAV	CCTTC	2 cut(s)	174, 819
HpyCH4III	ACNGT	1 cut(s)	867
HpyCH4V	TGCA	3 cut(s)	72, 763, 891
HpyF10VI	GCNNNNNNNGC	2 cut(s)	463, 519
HpyF3I	CTNAG	1 cut(s)	715
Hsp92I	GRCGYC	1 cut(s)	860
Hsp92II	CATG	3 cut(s)	31, 325, 858
HspAI	GCGC	1 cut(s)	793
KpnI	GGTACC	1 cut(s)	17
Kzo9I	GATC	4 cut(s)	76, 398, 523, 830
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	390, 565
LpnPI	CCDG	8 cut(s)	30, 123, 167, 420, 496, 780, 798, 809
Lsp1109I	GCAGC	1 cut(s)	762
LweI	GCATC	3 cut(s)	750, 772, 799
MaeI	CTAG	1 cut(s)	885
MaeIII	GTNAC	1 cut(s)	861
MalI	GATC	4 cut(s)	78, 400, 525, 832
MboI	GATC	4 cut(s)	76, 398, 523, 830
MfeI	CAATTG	1 cut(s)	560
MhlI	GDGCHC	2 cut(s)	570, 872
MluCI	AATT	3 cut(s)	499, 560, 719
MmeI	TCCRAC	1 cut(s)	600
Mph1103I	ATGCAT	1 cut(s)	765
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	2 cut(s)	204, 483
MspI	CCGG	3 cut(s)	17, 767, 796
MunI	CAATTG	1 cut(s)	560
MwoI	GCNNNNNNNGC	2 cut(s)	463, 519
NdeI	CATATG	1 cut(s)	534
NdeII	GATC	4 cut(s)	76, 398, 523, 830
NlaIII	CATG	3 cut(s)	31, 325, 858
NlaIV	GGNNCC	3 cut(s)	15, 567, 869
NmuCI	GTSAC	1 cut(s)	861
NsiI	ATGCAT	1 cut(s)	765
NspI	RCATGY	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	483
PaeI	GCATGC	1 cut(s)	31
PagI	TCATGA	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	291
PinAI	ACCGGT	1 cut(s)	16
PkrI	GCNGC	5 cut(s)	33, 40, 252, 412, 752
PspFI	CCCAGC	1 cut(s)	812
PspN4I	GGNNCC	3 cut(s)	15, 567, 869
PspPI	GGNCC	1 cut(s)	437
RsaI	GTAC	2 cut(s)	15, 114
RsaNI	GTAC	2 cut(s)	14, 113
RseI	CAYNNNNRTG	2 cut(s)	204, 483
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	5 cut(s)	32, 39, 251, 411, 751
Sau3AI	GATC	4 cut(s)	76, 398, 523, 830
Sau96I	GGNCC	1 cut(s)	437
SduI	GDGCHC	2 cut(s)	570, 872
SetI	ASST	9 cut(s)	11, 98, 112, 118, 134, 159, 383, 455, 890
SfaNI	GCATC	3 cut(s)	750, 772, 799
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	2 cut(s)	204, 483
SmlI	CTYRAG	2 cut(s)	254, 745
SmoI	CTYRAG	2 cut(s)	254, 745
SphI	GCATGC	1 cut(s)	31
Sse9I	AATT	3 cut(s)	499, 560, 719
SsiI	CCGC	9 cut(s)	31, 38, 175, 251, 408, 411, 469, 817, 842
SspI	AATATT	1 cut(s)	228
SspMI	CTAG	1 cut(s)	885
TaaI	ACNGT	1 cut(s)	867
TaqI	TCGA	2 cut(s)	289, 335
TasI	AATT	3 cut(s)	499, 560, 719
TauI	GCSGC	4 cut(s)	34, 41, 253, 413
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	861
TseI	GCWGC	1 cut(s)	750
Tsp45I	GTSAC	1 cut(s)	861
TspDTI	ATGAA	1 cut(s)	310
TspGWI	ACGGA	2 cut(s)	173, 377
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	2 cut(s)	499, 719
XceI	RCATGY	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	1 cut(s)	885
Zsp2I	ATGCAT	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.