RLG00000001525

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002115
Physical Location & Seq
Reverse (-)
17027022 .. 17029500
2479 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001525

Sequence Viewer

Length: 582 bp
ATGGAGCCTTCGCAGATGCAGCGAATGCAGATGAAGCTTCTGATGTCGGGTTGCAGAGTGCAAGTCTTGGTCGGAGGGCAGATCGGTCGTGCAGCTGAGGTAACTTATGCTGGAACGGGTCAAATCCGGGTTGGCCTTGAGGCGTCCGGGGAGGTCCGTGGCCAGATTGGAGTCGAGCCTGTAGGTAAAGCAGGACTCAGTCTAACGGTGAAAAAGACGCTGAGATTGCCGGAGGTTGTCACTGAGATAGCTGATATCACTTGTGATATGGATGCTGGTGGAGAGGAGGAGAAGGGTGATGAGGTTTCGGAAGAGGGGGGATCGTCGCAGCCTGTGAGGCTATGGAATCTGAGGACAAAGAAGGCTCCAATTGGCGGTGGTGGCGGCAAGGGGCTGAAAATTGAGGAGAGAAAGGTGAATTACTTGCCGTTGGAGAGTAAGGCTCTGGAGAAGGACGGGCCCAAGTTCTCAGTCACTCTCTCCAAGAAGGAGATCGAAGAGGATTTCATACAGATGCTCGGCCATCGCCCTCCCGTTGCCCCAAGAAGAGGCCCAGAGTGGTGCAGAAGCAATTGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

194

Amino Acids

20.97

Weight (kDa)

7.67

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 160 - 183 5.4e-07 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 375, 384
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 2 cut(s) 160, 520
AcyI GRCGYC 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 374, 548
AluBI AGCT 3 cut(s) 37, 95, 251
AluI AGCT 3 cut(s) 37, 95, 251
AlwI GGATC 1 cut(s) 328
AoxI GGCC 5 cut(s) 133, 160, 458, 520, 550
ApaI GGGCCC 1 cut(s) 462
ApeKI GCWGC 3 cut(s) 19, 92, 328
AspS9I GGNCC 4 cut(s) 154, 458, 459, 551
AsuC2I CCSGG 2 cut(s) 128, 148
AsuHPI GGTGA 3 cut(s) 220, 308, 427
AvaII GGWCC 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 462
BalI TGGCCA 1 cut(s) 162
BanII GRGCYC 1 cut(s) 462
BbvCI CCTCAGC 1 cut(s) 96
BbvI GCAGC 3 cut(s) 31, 104, 340
BccI CCATC 1 cut(s) 531
BceAI ACGGC 1 cut(s) 412
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BcnI CCSGG 2 cut(s) 128, 148
BfmI CTRYAG 1 cut(s) 180
BglI GCCNNNNNGGC 1 cut(s) 337
BisI GCNGC 4 cut(s) 20, 93, 329, 385
BlsI GCNGC 4 cut(s) 21, 94, 330, 386
Bme1390I CCNGG 2 cut(s) 128, 148
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 4 cut(s) 154, 458, 459, 551
BmiI GGNNCC 3 cut(s) 6, 366, 460
BmrFI CCNGG 2 cut(s) 128, 148
BmsI GCATC 3 cut(s) 6, 262, 504
BplI GAGNNNNNCTC 2 cut(s) 427, 459
BpmI CTGGAG 1 cut(s) 467
Bpu10I CCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 2 cut(s) 128, 148
BsaHI GRCGYC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 147, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 548
BseDI CCNNGG 2 cut(s) 147, 157
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 2 cut(s) 374, 548
BseMII CTCAG 6 cut(s) 87, 211, 212, 234, 341, 483
BseRI GAGGAG 3 cut(s) 299, 302, 419
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 3 cut(s) 31, 104, 340
BsgI GTGCAG 1 cut(s) 111
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 5 cut(s) 135, 162, 460, 522, 552
BsiEI CGRYCG 1 cut(s) 88
BsiSI CCGG 3 cut(s) 127, 147, 230
BslI CCNNNNNNNGG 2 cut(s) 374, 548
BsmI GAATGC 1 cut(s) 30
BsnI GGCC 5 cut(s) 135, 162, 460, 522, 552
Bsp120I GGGCCC 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 3 cut(s) 81, 320, 492
BspACI CCGC 2 cut(s) 375, 384
BspANI GGCC 5 cut(s) 135, 162, 460, 522, 552
BspCNI CTCAG 6 cut(s) 88, 210, 213, 235, 342, 482
BspLI GGNNCC 3 cut(s) 6, 366, 460
BspPI GGATC 1 cut(s) 328
BssECI CCNNGG 2 cut(s) 147, 157
BssMI GATC 3 cut(s) 81, 320, 492
BssNI GRCGYC 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 3 cut(s) 306, 492, 541
BstACI GRCGYC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 25
BstDEI CTNAG 6 cut(s) 96, 197, 221, 243, 350, 469
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 3 cut(s) 84, 323, 495
BstMBI GATC 3 cut(s) 81, 320, 492
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 6 cut(s) 19, 25, 34, 226, 337, 381
BstSCI CCNGG 2 cut(s) 126, 146
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 462
BstV1I GCAGC 3 cut(s) 31, 104, 340
BsuRI GGCC 5 cut(s) 135, 162, 460, 522, 552
BtgI CCRYGG 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 509
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 240
Cfr13I GGNCC 4 cut(s) 154, 458, 459, 551
CseI GACGC 2 cut(s) 132, 226
DdeI CTNAG 6 cut(s) 96, 197, 221, 243, 350, 469
DpnI GATC 3 cut(s) 83, 322, 494
DpnII GATC 3 cut(s) 81, 320, 492
EaeI YGGCCR 2 cut(s) 160, 520
Eam1104I CTCTTC 3 cut(s) 306, 492, 541
EarI CTCTTC 3 cut(s) 306, 492, 541
Eco24I GRGCYC 1 cut(s) 462
Eco32I GATATC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 154
EcoRV GATATC 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 462
FaiI YATR 5 cut(s) 108, 269, 343, 509, 580
Fnu4HI GCNGC 4 cut(s) 20, 93, 329, 385
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 4 cut(s) 20, 93, 329, 385
GluI GCNGC 4 cut(s) 20, 93, 329, 385
GsuI CTGGAG 1 cut(s) 467
HaeIII GGCC 5 cut(s) 135, 162, 460, 522, 552
HapII CCGG 3 cut(s) 127, 147, 230
HgaI GACGC 2 cut(s) 132, 226
Hin1I GRCGYC 1 cut(s) 143
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 3 cut(s) 171, 195, 346
HpaII CCGG 3 cut(s) 127, 147, 230
HphI GGTGA 3 cut(s) 220, 308, 427
Hpy188I TCNGA 4 cut(s) 42, 74, 310, 351
Hpy188III TCNNGA 1 cut(s) 446
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 5 cut(s) 18, 286, 355, 445, 481
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 6 cut(s) 19, 28, 54, 61, 92, 564
HpyF10VI GCNNNNNNNGC 6 cut(s) 19, 25, 34, 226, 337, 381
HpyF3I CTNAG 6 cut(s) 96, 197, 221, 243, 350, 469
Hsp92I GRCGYC 1 cut(s) 143
Kzo9I GATC 3 cut(s) 81, 320, 492
LmnI GCTCC 2 cut(s) 4, 370
Lsp1109I GCAGC 3 cut(s) 31, 104, 340
LweI GCATC 3 cut(s) 6, 262, 504
MaeIII GTNAC 3 cut(s) 100, 238, 472
MalI GATC 3 cut(s) 83, 322, 494
MboI GATC 3 cut(s) 81, 320, 492
MboII GAAGA 3 cut(s) 323, 509, 558
MfeI CAATTG 2 cut(s) 369, 571
MhlI GDGCHC 1 cut(s) 462
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 4 cut(s) 369, 399, 418, 571
MluNI TGGCCA 1 cut(s) 162
MlyI GAGTC 2 cut(s) 180, 189
MmeI TCCRAC 2 cut(s) 52, 411
Mox20I TGGCCA 1 cut(s) 162
MscI TGGCCA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 512
Msp20I TGGCCA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 3 cut(s) 127, 147, 230
MspR9I CCNGG 2 cut(s) 128, 148
MunI CAATTG 2 cut(s) 369, 571
Mva1269I GAATGC 1 cut(s) 30
MwoI GCNNNNNNNGC 6 cut(s) 19, 25, 34, 226, 337, 381
NciI CCSGG 2 cut(s) 128, 148
NdeII GATC 3 cut(s) 81, 320, 492
NlaIV GGNNCC 3 cut(s) 6, 366, 460
NmeAIII GCCGAG 1 cut(s) 498
NmuCI GTSAC 2 cut(s) 238, 472
PctI GAATGC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 346
PflFI GACNNNGTC 1 cut(s) 198
PkrI GCNGC 4 cut(s) 21, 94, 330, 386
PleI GAGTC 2 cut(s) 179, 189
PpsI GAGTC 2 cut(s) 179, 189
PspN4I GGNNCC 3 cut(s) 6, 366, 460
PspOMI GGGCCC 1 cut(s) 458
PspPI GGNCC 4 cut(s) 154, 458, 459, 551
PsyI GACNNNGTC 1 cut(s) 198
PvuII CAGCTG 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 512
SatI GCNGC 4 cut(s) 20, 93, 329, 385
Sau3AI GATC 3 cut(s) 81, 320, 492
Sau96I GGNCC 4 cut(s) 154, 458, 459, 551
SchI GAGTC 2 cut(s) 180, 189
ScrFI CCNGG 2 cut(s) 128, 148
SduI GDGCHC 1 cut(s) 462
SetI ASST 9 cut(s) 39, 97, 102, 156, 187, 237, 253, 306, 417
SfaNI GCATC 3 cut(s) 6, 262, 504
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 512
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 4 cut(s) 369, 399, 418, 571
SsiI CCGC 2 cut(s) 375, 384
StyD4I CCNGG 2 cut(s) 126, 146
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 174, 495
TaqII GACCGA 1 cut(s) 74
TasI AATT 4 cut(s) 369, 399, 418, 571
TauI GCSGC 1 cut(s) 387
TfiI GAWTC 1 cut(s) 346
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 2 cut(s) 238, 472
TseI GCWGC 3 cut(s) 19, 92, 328
Tsp45I GTSAC 2 cut(s) 238, 472
TspDTI ATGAA 2 cut(s) 47, 496
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 1 cut(s) 247
Tth111I GACNNNGTC 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.