Rroxscaffold_5G00376060

Protein of unknown function (DUF1639)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
56823402 .. 56826938
3537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00376060.1

Sequence Viewer

Length: 552 bp
ATGGTGTATACGGGGGGGTCGGAGGAGAGAACGAGAGTGGTGGTGGCTAAGTCGTCGTCGATGAATTCCGAGAGAGCGGCGAAGCCTCTGCACAATTTCAGTTTGCCTTGGGATTTGAAGTGGGGGAACCAGAGGCACCTGCGGTGCATGAAGGTGGATTCCGATGGCGACGCGGCGGCGGATTTTGATCGGCGATCGGCGGTGGGGGTGGTTCGGCGGCGGGGAGGGGAATCGGAGGGGCAGTTCGACAGGCGGAGCAGGGTGAGGAGGCAGAGGATCGAGAGAGCCGGCGACGGCGAAGAGGAGGAGGGGATCGAGGCGGTGAGGGAGAAGCTCATGTTTGAATTCAAAACGGCGGCGGACAAGATGAAAGACGCGATTTTGAGAGGGGAGAAGGAAGAGGTGGAGGAGGAGGACGACCACGAGCCGGCGCCGGTTGCTTCTGCTGCTGCTGCTGTTGTTACTGACGTGACGGCGGCGGCGGAGGAGGAGGAAGCTGAGGCTGTGGCTGCGGAGGAGGGGGATCGTCGCCGGCGGCGGCGGCGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

183

Amino Acids

20.59

Weight (kDa)

5.36

Isoelectric Point (pI)

86.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 147
AccB1I GGYRCC 2 cut(s) 135, 430
AccBSI CCGCTC 1 cut(s) 77
AccI GTMKAC 1 cut(s) 8
AccII CGCG 2 cut(s) 173, 377
AclWI GGATC 3 cut(s) 284, 320, 531
AcsI RAATTY 2 cut(s) 64, 344
AcyI GRCGYC 1 cut(s) 431
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 3 cut(s) 118, 344, 349
AjiI CACGTC 1 cut(s) 469
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 2 cut(s) 334, 497
AluI AGCT 2 cut(s) 334, 497
AlwI GGATC 3 cut(s) 284, 320, 531
ApeKI GCWGC 4 cut(s) 446, 449, 452, 509
ApoI RAATTY 2 cut(s) 64, 344
AspLEI GCGC 1 cut(s) 433
AsuHPI GGTGA 2 cut(s) 274, 334
BanI GGYRCC 2 cut(s) 135, 430
BauI CACGAG 1 cut(s) 422
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 4 cut(s) 433, 436, 439, 496
BccI CCATC 1 cut(s) 158
BceAI ACGGC 3 cut(s) 310, 369, 489
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BfoI RGCGCY 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 147
BmgBI CACGTC 1 cut(s) 469
BmiI GGNNCC 3 cut(s) 128, 137, 432
Bpu10I CCTNAGC 1 cut(s) 498
BsaBI GATNNNNATC 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse118I RCCGGY 4 cut(s) 287, 427, 433, 531
Bse8I GATNNNNATC 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMII CTCAG 1 cut(s) 489
BseRI GAGGAG 9 cut(s) 38, 280, 317, 320, 422, 425, 500, 503, 530
BseXI GCAGC 4 cut(s) 433, 436, 439, 496
BsgI GTGCAG 1 cut(s) 74
Bsh1236I CGCG 2 cut(s) 173, 377
Bsh1285I CGRYCG 1 cut(s) 197
BshNI GGYRCC 2 cut(s) 135, 430
BsiEI CGRYCG 1 cut(s) 197
BsiSI CCGG 4 cut(s) 288, 428, 434, 532
BslI CCNNNNNNNGG 1 cut(s) 427
Bsp143I GATC 5 cut(s) 187, 194, 276, 312, 523
BspCNI CTCAG 1 cut(s) 490
BspFNI CGCG 2 cut(s) 173, 377
BspLI GGNNCC 3 cut(s) 128, 137, 432
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 3 cut(s) 284, 320, 531
BspT107I GGYRCC 2 cut(s) 135, 430
BsrBI CCGCTC 1 cut(s) 77
BsrFI RCCGGY 4 cut(s) 287, 427, 433, 531
BssAI RCCGGY 4 cut(s) 287, 427, 433, 531
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 5 cut(s) 187, 194, 276, 312, 523
BssNAI GTATAC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 431
BssSI CACGAG 1 cut(s) 422
BssT1I CCWWGG 1 cut(s) 107
Bst1107I GTATAC 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 422
Bst6I CTCTTC 2 cut(s) 294, 393
BstACI GRCGYC 1 cut(s) 431
BstC8I GCNNGC 3 cut(s) 289, 429, 533
BstDEI CTNAG 2 cut(s) 48, 498
BstFNI CGCG 2 cut(s) 173, 377
BstH2I RGCGCY 1 cut(s) 434
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 5 cut(s) 190, 197, 279, 315, 526
BstMBI GATC 5 cut(s) 187, 194, 276, 312, 523
BstMCI CGRYCG 1 cut(s) 197
BstMWI GCNNNNNNNGC 6 cut(s) 437, 446, 452, 509, 541, 544
BstUI CGCG 2 cut(s) 173, 377
BstV1I GCAGC 4 cut(s) 433, 436, 439, 496
BstZ17I GTATAC 1 cut(s) 9
BtrI CACGTC 1 cut(s) 469
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 3 cut(s) 289, 429, 533
CfoI GCGC 1 cut(s) 433
Cfr10I RCCGGY 4 cut(s) 287, 427, 433, 531
CseI GACGC 2 cut(s) 179, 383
CviAII CATG 2 cut(s) 148, 337
CviJI RGCY 9 cut(s) 47, 85, 287, 334, 427, 497, 503, 509, 547
CviKI_1 RGCY 9 cut(s) 47, 85, 287, 334, 427, 497, 503, 509, 547
DdeI CTNAG 2 cut(s) 48, 498
DinI GGCGCC 1 cut(s) 432
DpnI GATC 5 cut(s) 189, 196, 278, 314, 525
DpnII GATC 5 cut(s) 187, 194, 276, 312, 523
Eam1104I CTCTTC 2 cut(s) 294, 393
EarI CTCTTC 2 cut(s) 294, 393
EciI GGCGGA 4 cut(s) 194, 268, 374, 497
Eco130I CCWWGG 1 cut(s) 107
EcoRI GAATTC 2 cut(s) 64, 344
EcoT14I CCWWGG 1 cut(s) 107
EgeI GGCGCC 1 cut(s) 432
EheI GGCGCC 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 2 cut(s) 151, 340
FaiI YATR 3 cut(s) 9, 149, 338
FatI CATG 2 cut(s) 147, 336
FauI CCCGC 1 cut(s) 213
FblI GTMKAC 1 cut(s) 8
GlaI GCGC 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 434
HapII CCGG 4 cut(s) 288, 428, 434, 532
HgaI GACGC 2 cut(s) 179, 383
HhaI GCGC 1 cut(s) 433
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 2 cut(s) 151, 340
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HinfI GANTC 2 cut(s) 158, 230
HpaII CCGG 4 cut(s) 288, 428, 434, 532
HphI GGTGA 2 cut(s) 274, 334
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 4 cut(s) 22, 70, 163, 235
Hpy188III TCNNGA 1 cut(s) 280
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 5 cut(s) 58, 61, 173, 296, 531
HpyAV CCTTC 2 cut(s) 145, 388
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 2 cut(s) 91, 147
HpyF10VI GCNNNNNNNGC 6 cut(s) 437, 446, 452, 509, 541, 544
HpyF3I CTNAG 2 cut(s) 48, 498
HpySE526I ACGT 1 cut(s) 468
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 2 cut(s) 151, 340
HspAI GCGC 1 cut(s) 431
KasI GGCGCC 1 cut(s) 430
KroI GCCGGC 3 cut(s) 287, 427, 531
KroNI GCCGGC 3 cut(s) 289, 429, 533
Kzo9I GATC 5 cut(s) 187, 194, 276, 312, 523
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 8 cut(s) 143, 152, 235, 244, 301, 441, 447, 545
Lsp1109I GCAGC 4 cut(s) 433, 436, 439, 496
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 2 cut(s) 460, 469
MalI GATC 5 cut(s) 189, 196, 278, 314, 525
MbiI CCGCTC 1 cut(s) 77
MboI GATC 5 cut(s) 187, 194, 276, 312, 523
MboII GAAGA 2 cut(s) 311, 410
MluCI AATT 3 cut(s) 64, 94, 344
Mly113I GGCGCC 1 cut(s) 431
MreI CGCCGGCG 1 cut(s) 531
MroNI GCCGGC 3 cut(s) 287, 427, 531
MslI CAYNNNNRTG 1 cut(s) 152
MspI CCGG 4 cut(s) 288, 428, 434, 532
MvnI CGCG 2 cut(s) 173, 377
MwoI GCNNNNNNNGC 6 cut(s) 437, 446, 452, 509, 541, 544
NaeI GCCGGC 3 cut(s) 289, 429, 533
NarI GGCGCC 1 cut(s) 431
NdeII GATC 5 cut(s) 187, 194, 276, 312, 523
NgoMIV GCCGGC 3 cut(s) 287, 427, 531
NlaIII CATG 2 cut(s) 151, 340
NlaIV GGNNCC 3 cut(s) 128, 137, 432
NmuCI GTSAC 1 cut(s) 469
PaqCI CACCTGC 1 cut(s) 147
PdiI GCCGGC 3 cut(s) 289, 429, 533
PfeI GAWTC 2 cut(s) 158, 230
Ple19I CGATCG 1 cut(s) 197
PluTI GGCGCC 1 cut(s) 434
PspN4I GGNNCC 3 cut(s) 128, 137, 432
PvuI CGATCG 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 152
Sau3AI GATC 5 cut(s) 187, 194, 276, 312, 523
SetI ASST 6 cut(s) 141, 156, 336, 405, 471, 499
SfoI GGCGCC 1 cut(s) 432
SgrAI CRCCGGYG 1 cut(s) 531
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 3 cut(s) 64, 94, 344
SspDI GGCGCC 1 cut(s) 430
StyI CCWWGG 1 cut(s) 107
TaiI ACGT 1 cut(s) 471
TaqI TCGA 4 cut(s) 59, 246, 279, 315
TasI AATT 3 cut(s) 64, 94, 344
TfiI GAWTC 2 cut(s) 158, 230
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 4 cut(s) 446, 449, 452, 509
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 3 cut(s) 77, 164, 383
XapI RAATTY 2 cut(s) 64, 344
XmiI GTMKAC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.