Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005624.1

Orthogroup ID

OG0002115

Physical Location & Seq

Genomic Coordinates Reverse (-)

2966 .. 3473

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005624.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atggagcctaggactctctctcagtgtagctccttgcttctattctttcctccccgatatactgacccaaatcctctactccggtttactcttctccatgaaaccttaattccccagttgttcttagcggcagaggaggagaaggatgctgaggtttcagaggaggggggatcgtcgcagccggtgaggctgtggaatctgaggacgaggaaggctccaattggcggtggtggcggcaaggggttgaaaattgaggagagaaaggtgaattacttgcagttggggagtgaggctctggagaagaaggacaggcccaagttctcactcactctgtccaagaaggagatcgaagaggatttcatacagatgctaggacatcgccctcccgccgccccaagaagaggcccaaagtggtgcagaagcaattggatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

144

Amino Acids

16.41

Weight (kDa)

9.2

Isoelectric Point (pI)

63.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25370 AT1G25370 AT1G68340 AT1G68340 AT1G68340
fragaria_vesca	FvH4_4g27050
malus_domestica	MD13G1039500.v1.1 MD16G1040400.v1.1
prunus_persica	Prupe.1G313700_v2.0.a1 Prupe.1G313700_v2.0.a1
pyrus_communis	pycom05g23430 pycom13g03400 pycom13g29000 pycom15g37110 pycom16g03510 pycom17g22390
rosa_chinensis	RchiOBHm_Chr2g0122051 RchiOBHm_Chr4g0434851 RchiOBHm_Chr5g0054211
rosa_laevigata	RLG00000001525 RLG00000006641 RLG00000020224
rosa_multiflora	Rmu_sc0000674.1_g000025 Rmu_sc0002398.1_g000003 Rmu_sc0003726.1_g000003 Rmu_sc0005624.1_g000003 Rmu_sc0009656.1_g000005
rosa_roxburghii	Rroxscaffold_156G00440310 Rroxscaffold_5G00342830 Rroxscaffold_5G00376060 Rroxscaffold_5G00383210
rosa_rugosa	Rorug04G0279400 Rorug04G0279500 Rorug04G0279600
rosa_samantha	Rh1AG099900 Rh2BG456800 Rh4CG259900 Rh4CG358400 Rh4DG337900 Rh7CG341700 Rh7CG453800 Rh7DG393600
rosa_wichuraiana	Rw4G029260 Rw7G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	128, 225, 234, 387, 390
AclWI	GGATC	1 cut(s)	178
AfiI	CCNNNNNNNGG	2 cut(s)	224, 401
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
AlwI	GGATC	1 cut(s)	178
AoxI	GGCC	2 cut(s)	311, 403
ApeKI	GCWGC	1 cut(s)	178
AspA2I	CCTAGG	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	312, 404
AsuHPI	GGTGA	2 cut(s)	196, 277
AvrII	CCTAGG	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	9, 371
BglI	GCCNNNNNGGC	1 cut(s)	187
BisI	GCNGC	4 cut(s)	129, 179, 235, 390
BlnI	CCTAGG	1 cut(s)	8
BlsI	GCNGC	4 cut(s)	130, 180, 236, 391
BmgT120I	GGNCC	2 cut(s)	312, 404
BmiI	GGNNCC	2 cut(s)	6, 216
BmrI	ACTGGG	1 cut(s)	109
BmsI	GCATC	2 cut(s)	136, 357
BmuI	ACTGGG	1 cut(s)	109
BplI	GAGNNNNNCTC	4 cut(s)	199, 231, 277, 309
BpmI	CTGGAG	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 401
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	224, 401
BseMII	CTCAG	3 cut(s)	35, 141, 191
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	4 cut(s)	149, 152, 176, 269
BseXI	GCAGC	1 cut(s)	190
BshFI	GGCC	2 cut(s)	313, 405
BsiSI	CCGG	2 cut(s)	82, 182
BslI	CCNNNNNNNGG	2 cut(s)	224, 401
BsnI	GGCC	2 cut(s)	313, 405
Bsp143I	GATC	2 cut(s)	170, 345
BspACI	CCGC	5 cut(s)	128, 225, 234, 387, 390
BspANI	GGCC	2 cut(s)	313, 405
BspCNI	CTCAG	3 cut(s)	34, 142, 192
BspLI	GGNNCC	2 cut(s)	6, 216
BspPI	GGATC	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	2 cut(s)	170, 345
BssT1I	CCWWGG	1 cut(s)	8
Bst6I	CTCTTC	3 cut(s)	96, 345, 394
BstDEI	CTNAG	4 cut(s)	21, 124, 150, 200
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	2 cut(s)	173, 348
BstMBI	GATC	2 cut(s)	170, 345
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 231
BstV1I	GCAGC	1 cut(s)	190
BsuRI	GGCC	2 cut(s)	313, 405
BtgZI	GCGATG	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	312, 404
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	8 cut(s)	7, 30, 181, 190, 215, 293, 313, 405
CviKI_1	RGCY	8 cut(s)	7, 30, 181, 190, 215, 293, 313, 405
DdeI	CTNAG	4 cut(s)	21, 124, 150, 200
DpnI	GATC	2 cut(s)	172, 347
DpnII	GATC	2 cut(s)	170, 345
Eam1104I	CTCTTC	3 cut(s)	96, 345, 394
EarI	CTCTTC	3 cut(s)	96, 345, 394
Eco130I	CCWWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	1 cut(s)	101
FaiI	YATR	4 cut(s)	60, 99, 362, 433
FatI	CATG	1 cut(s)	97
FauI	CCCGC	1 cut(s)	394
Fnu4HI	GCNGC	4 cut(s)	129, 179, 235, 390
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	4 cut(s)	129, 179, 235, 390
FspBI	CTAG	2 cut(s)	9, 371
GluI	GCNGC	4 cut(s)	129, 179, 235, 390
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	313, 405
HapII	CCGG	2 cut(s)	82, 182
Hin1II	CATG	1 cut(s)	101
HinfI	GANTC	2 cut(s)	13, 196
HpaII	CCGG	2 cut(s)	82, 182
HphI	GGTGA	2 cut(s)	196, 277
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	160, 201
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	1 cut(s)	87
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	4 cut(s)	136, 205, 298, 334
HpyCH4V	TGCA	2 cut(s)	277, 417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 231
HpyF3I	CTNAG	4 cut(s)	21, 124, 150, 200
Hsp92II	CATG	1 cut(s)	101
Kzo9I	GATC	2 cut(s)	170, 345
LmnI	GCTCC	3 cut(s)	4, 35, 220
LpnPI	CCDG	5 cut(s)	95, 128, 195, 281, 295
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	136, 357
MaeI	CTAG	2 cut(s)	9, 371
MalI	GATC	2 cut(s)	172, 347
MboI	GATC	2 cut(s)	170, 345
MboII	GAAGA	4 cut(s)	83, 313, 362, 411
MfeI	CAATTG	2 cut(s)	219, 424
MluCI	AATT	5 cut(s)	108, 219, 249, 268, 424
MlyI	GAGTC	1 cut(s)	7
MseI	TTAA	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	365
MspI	CCGG	2 cut(s)	82, 182
MunI	CAATTG	2 cut(s)	219, 424
MwoI	GCNNNNNNNGC	2 cut(s)	187, 231
NdeII	GATC	2 cut(s)	170, 345
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	2 cut(s)	6, 216
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	4 cut(s)	130, 180, 236, 391
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	6, 216
PspPI	GGNCC	2 cut(s)	312, 404
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	4 cut(s)	129, 179, 235, 390
Sau3AI	GATC	2 cut(s)	170, 345
Sau96I	GGNCC	2 cut(s)	312, 404
SchI	GAGTC	1 cut(s)	7
SetI	ASST	4 cut(s)	32, 107, 156, 267
SfaNI	GCATC	2 cut(s)	136, 357
SmiMI	CAYNNNNRTG	1 cut(s)	365
Sse9I	AATT	5 cut(s)	108, 219, 249, 268, 424
SsiI	CCGC	5 cut(s)	128, 225, 234, 387, 390
SspMI	CTAG	2 cut(s)	9, 371
StyI	CCWWGG	1 cut(s)	8
TaqI	TCGA	1 cut(s)	348
TasI	AATT	5 cut(s)	108, 219, 249, 268, 424
TauI	GCSGC	3 cut(s)	131, 237, 392
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	29
TseI	GCWGC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	114, 349
TspRI	CASTG	1 cut(s)	29
XmaJI	CCTAGG	1 cut(s)	8
XspI	CTAG	2 cut(s)	9, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.