Rh4CG259900

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002115
Physical Location & Seq
Forward (+)
51444443 .. 51446447
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG259900.1

Sequence Viewer

Length: 360 bp
ATGCGTCTCCAATTCATCGGATCACGCCTGAATAGATCGTCACCTCACCCCTGTTGGGAAGTAGAGGAGGAGAAGGACGCTGAGGTTTCGGAGGAGGGGGGATCGTCGCAGCCGGTGAGGCTGTGGAATCTGAGGACGAAGAAGGCTCCAATTGGTGGTGGTGGCGACAAGGGGTTGAAAATTGAGGAGAGAAAGGTGAATTACTTGCCGTTGGAGAGTAAGGCTCTGGAGAAGAAGGACGGGCCCAAGTTCTCACTCACTCTCTCCAAGAAGGAGATCGAAAAGGATTTCATACAGATGCTCGGCCACCGCCCTCCCGCTGCCCCAAGAAGAGGCCCAGAGTGGTGCAGAAGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

119

Amino Acids

13.5

Weight (kDa)

9.36

Isoelectric Point (pI)

74.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 88 - 111 6.3e-07 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 155
AciI CCGC 2 cut(s) 310, 318
AclWI GGATC 2 cut(s) 28, 109
AcoI YGGCCR 1 cut(s) 304
AfiI CCNNNNNNNGG 3 cut(s) 55, 155, 332
AgsI TTSAA 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 2 cut(s) 28, 109
AoxI GGCC 3 cut(s) 242, 304, 334
ApaI GGGCCC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 109, 320
AspS9I GGNCC 3 cut(s) 242, 243, 335
AsuHPI GGTGA 4 cut(s) 33, 38, 127, 208
BaeGI GKGCMC 1 cut(s) 246
BanII GRGCYC 1 cut(s) 246
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 121, 307
BceAI ACGGC 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 11
BglI GCCNNNNNGGC 1 cut(s) 118
BisI GCNGC 2 cut(s) 110, 321
BlsI GCNGC 2 cut(s) 111, 322
BmgT120I GGNCC 3 cut(s) 242, 243, 335
BmiI GGNNCC 2 cut(s) 147, 244
BmsI GCATC 1 cut(s) 288
BplI GAGNNNNNCTC 2 cut(s) 208, 240
BpmI CTGGAG 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 81
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 155, 332
Bse118I RCCGGY 1 cut(s) 112
BseLI CCNNNNNNNGG 3 cut(s) 55, 155, 332
BseMII CTCAG 2 cut(s) 72, 122
BseRI GAGGAG 4 cut(s) 80, 83, 107, 200
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 2 cut(s) 121, 307
BshFI GGCC 3 cut(s) 244, 306, 336
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 3 cut(s) 55, 155, 332
BsmAI GTCTC 1 cut(s) 11
BsmBI CGTCTC 1 cut(s) 11
BsnI GGCC 3 cut(s) 244, 306, 336
Bsp120I GGGCCC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 4 cut(s) 20, 35, 101, 276
BspACI CCGC 2 cut(s) 310, 318
BspANI GGCC 3 cut(s) 244, 306, 336
BspCNI CTCAG 2 cut(s) 73, 123
BspLI GGNNCC 2 cut(s) 147, 244
BspPI GGATC 2 cut(s) 28, 109
BsrFI RCCGGY 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 112
BssMI GATC 4 cut(s) 20, 35, 101, 276
Bst6I CTCTTC 1 cut(s) 325
BstDEI CTNAG 2 cut(s) 81, 131
BstKTI GATC 4 cut(s) 23, 38, 104, 279
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 4 cut(s) 20, 35, 101, 276
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstSLI GKGCMC 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 121, 307
BsuRI GGCC 3 cut(s) 244, 306, 336
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 3 cut(s) 242, 243, 335
CseI GACGC 1 cut(s) 86
CviJI RGCY 7 cut(s) 112, 121, 146, 224, 244, 306, 336
CviKI_1 RGCY 7 cut(s) 112, 121, 146, 224, 244, 306, 336
DdeI CTNAG 2 cut(s) 81, 131
DpnI GATC 4 cut(s) 22, 37, 103, 278
DpnII GATC 4 cut(s) 20, 35, 101, 276
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 11
FaiI YATR 1 cut(s) 293
FauI CCCGC 1 cut(s) 325
Fnu4HI GCNGC 2 cut(s) 110, 321
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 2 cut(s) 110, 321
GluI GCNGC 2 cut(s) 110, 321
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 3 cut(s) 244, 306, 336
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 86
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 113
HphI GGTGA 4 cut(s) 33, 38, 127, 208
Hpy188I TCNGA 3 cut(s) 20, 91, 132
Hpy188III TCNNGA 1 cut(s) 227
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 4 cut(s) 67, 136, 229, 265
HpyCH4V TGCA 1 cut(s) 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
HpyF3I CTNAG 2 cut(s) 81, 131
Kzo9I GATC 4 cut(s) 20, 35, 101, 276
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 5 cut(s) 41, 64, 126, 212, 351
Lsp1109I GCAGC 2 cut(s) 121, 307
LweI GCATC 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 39
MalI GATC 4 cut(s) 22, 37, 103, 278
MboI GATC 4 cut(s) 20, 35, 101, 276
MboII GAAGA 3 cut(s) 151, 244, 342
MfeI CAATTG 2 cut(s) 150, 355
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 5 cut(s) 11, 150, 180, 199, 355
MmeI TCCRAC 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 1 cut(s) 113
MunI CAATTG 2 cut(s) 150, 355
MwoI GCNNNNNNNGC 1 cut(s) 118
NdeII GATC 4 cut(s) 20, 35, 101, 276
NlaIV GGNNCC 2 cut(s) 147, 244
NmeAIII GCCGAG 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 127
PflMI CCANNNNNTGG 1 cut(s) 155
PkrI GCNGC 2 cut(s) 111, 322
PspN4I GGNNCC 2 cut(s) 147, 244
PspOMI GGGCCC 1 cut(s) 242
PspPI GGNCC 3 cut(s) 242, 243, 335
RseI CAYNNNNRTG 1 cut(s) 296
SatI GCNGC 2 cut(s) 110, 321
Sau3AI GATC 4 cut(s) 20, 35, 101, 276
Sau96I GGNCC 3 cut(s) 242, 243, 335
SduI GDGCHC 1 cut(s) 246
SetI ASST 3 cut(s) 46, 87, 198
SfaNI GCATC 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 5 cut(s) 11, 150, 180, 199, 355
SsiI CCGC 2 cut(s) 310, 318
TaqI TCGA 1 cut(s) 279
TasI AATT 5 cut(s) 11, 150, 180, 199, 355
TfiI GAWTC 1 cut(s) 127
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 2 cut(s) 109, 320
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 2 cut(s) 4, 280
Van91I CCANNNNNTGG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.