Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002115

Physical Location & Seq

Genomic Coordinates Reverse (-)

62647596 .. 62650856

Gene Structure 3261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020224

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGTCTTCTTCCCCACCAAAGCAACTGCAGAGACGGTCCTCGGCAAAGACAGGTCCTATTCCACACCGAAGCTCAAGCATTACTCCTCTTTCCCGTCCAACGGCAAGCATTGCCGCTCTTCCCCATATCAAGTGAAAGGGCTCTTAATCATCATCAAGGTCGACAAGCTCTTGGTGAGGAGAAGGACGCTGAGATTTCAGAGGCGGAGGAGGGGGAATCGTCGCCAGTTGTGACTGTGGTGAGGCTGTGGAATCTGAGGACGAGGAAGGCTCCAATTGGCGGTGGTGGCGGCAAGGGGTTGAAAATTGAGGAGAGAAAGGTGAATTACTTGCCGTTGAGGAGTGAGGCTGTGGAGAAGAAGGACAGGCCCAAGTTCTCACTCACTCTCTCCAAGAAGGAGATCGAAGAGGATTTCATACAGATGCCATGGCCATCGCCCTCCCTGCCGCCCCAAGAAGAGGCCCAGAGCGGTGTTGTTTTCCGGTATGTGGTTGACGGAGTCTCAGCTGATTCGTACAAGGTTGCGGAGTTCCCTGAAAATGTCAAGATCTGGTATGGCTTGTATGGCAGTTATGGGAATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

196

Amino Acids

21.93

Weight (kDa)

6.15

Isoelectric Point (pI)

64.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25370 AT1G25370 AT1G68340 AT1G68340 AT1G68340
fragaria_vesca	FvH4_4g27050
malus_domestica	MD13G1039500.v1.1 MD16G1040400.v1.1
prunus_persica	Prupe.1G313700_v2.0.a1 Prupe.1G313700_v2.0.a1
pyrus_communis	pycom05g23430 pycom13g03400 pycom13g29000 pycom15g37110 pycom16g03510 pycom17g22390
rosa_chinensis	RchiOBHm_Chr2g0122051 RchiOBHm_Chr4g0434851 RchiOBHm_Chr5g0054211
rosa_laevigata	RLG00000001525 RLG00000006641 RLG00000020224
rosa_multiflora	Rmu_sc0000674.1_g000025 Rmu_sc0002398.1_g000003 Rmu_sc0003726.1_g000003 Rmu_sc0005624.1_g000003 Rmu_sc0009656.1_g000005
rosa_roxburghii	Rroxscaffold_156G00440310 Rroxscaffold_5G00342830 Rroxscaffold_5G00376060 Rroxscaffold_5G00383210
rosa_rugosa	Rorug04G0279400 Rorug04G0279500 Rorug04G0279600
rosa_samantha	Rh1AG099900 Rh2BG456800 Rh4CG259900 Rh4CG358400 Rh4DG337900 Rh7CG341700 Rh7CG453800 Rh7DG393600
rosa_wichuraiana	Rw4G029260 Rw7G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	118, 471
AccI	GTMKAC	1 cut(s)	163
AciI	CCGC	7 cut(s)	116, 206, 282, 291, 449, 471, 527
AcoI	YGGCCR	1 cut(s)	431
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	4 cut(s)	102, 281, 460, 490
AgsI	TTSAA	1 cut(s)	304
AluBI	AGCT	3 cut(s)	74, 170, 509
AluI	AGCT	3 cut(s)	74, 170, 509
Alw26I	GTCTC	2 cut(s)	27, 508
AoxI	GGCC	3 cut(s)	368, 431, 462
AspS9I	GGNCC	4 cut(s)	38, 55, 369, 463
AsuHPI	GGTGA	3 cut(s)	188, 253, 334
AvaII	GGWCC	2 cut(s)	38, 55
BalI	TGGCCA	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	145
BccI	CCATC	1 cut(s)	442
BceAI	ACGGC	2 cut(s)	119, 319
BcoDI	GTCTC	2 cut(s)	27, 508
BfmI	CTRYAG	1 cut(s)	28
BglII	AGATCT	1 cut(s)	549
BisI	GCNGC	3 cut(s)	116, 292, 449
BlsI	GCNGC	3 cut(s)	117, 293, 450
Bme18I	GGWCC	2 cut(s)	38, 55
BmgT120I	GGNCC	4 cut(s)	38, 55, 369, 463
BmiI	GGNNCC	1 cut(s)	273
BmsI	GCATC	1 cut(s)	414
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
BpuEI	CTTGAG	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	41, 428
BsaWI	WCCGGW	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 281, 460, 490
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	41, 428
BseLI	CCNNNNNNNGG	4 cut(s)	102, 281, 460, 490
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	3 cut(s)	183, 248, 519
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	5 cut(s)	77, 194, 224, 326, 355
BshFI	GGCC	3 cut(s)	370, 433, 464
BsiSI	CCGG	1 cut(s)	484
BslI	CCNNNNNNNGG	4 cut(s)	102, 281, 460, 490
BsmAI	GTCTC	2 cut(s)	27, 508
BsmBI	CGTCTC	1 cut(s)	27
BsnI	GGCC	3 cut(s)	370, 433, 464
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	402, 549
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	7 cut(s)	116, 206, 282, 291, 449, 471, 527
BspANI	GGCC	3 cut(s)	370, 433, 464
BspCNI	CTCAG	3 cut(s)	184, 249, 518
BspLI	GGNNCC	1 cut(s)	273
BspMAI	CTGCAG	1 cut(s)	32
BspQI	GCTCTTC	1 cut(s)	125
BsrBI	CCGCTC	2 cut(s)	118, 471
BsrDI	GCAATG	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	41, 428
BssMI	GATC	2 cut(s)	402, 549
BssT1I	CCWWGG	1 cut(s)	428
Bst4CI	ACNGT	2 cut(s)	38, 238
Bst6I	CTCTTC	3 cut(s)	125, 402, 453
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	3 cut(s)	192, 257, 505
BstDSI	CCRYGG	1 cut(s)	428
BstKTI	GATC	2 cut(s)	405, 552
BstMAI	GTCTC	2 cut(s)	27, 508
BstMBI	GATC	2 cut(s)	402, 549
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 288, 445, 567
BstSFI	CTRYAG	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	549
BstYI	RGATCY	1 cut(s)	549
BsuRI	GGCC	3 cut(s)	370, 433, 464
BtgI	CCRYGG	1 cut(s)	428
BtgZI	GCGATG	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	108
Cfr13I	GGNCC	4 cut(s)	38, 55, 369, 463
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	1 cut(s)	429
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	3 cut(s)	192, 257, 505
DpnI	GATC	2 cut(s)	404, 551
DpnII	GATC	2 cut(s)	402, 549
EaeI	YGGCCR	1 cut(s)	431
Eam1104I	CTCTTC	3 cut(s)	125, 402, 453
EarI	CTCTTC	3 cut(s)	125, 402, 453
EciI	GGCGGA	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	145
Eco47I	GGWCC	2 cut(s)	38, 55
EcoO109I	RGGNCCY	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	428
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	1 cut(s)	432
FaiI	YATR	7 cut(s)	128, 419, 430, 489, 558, 567, 576
FatI	CATG	1 cut(s)	428
FblI	GTMKAC	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	116, 292, 449
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	3 cut(s)	116, 292, 449
GluI	GCNGC	3 cut(s)	116, 292, 449
HaeIII	GGCC	3 cut(s)	370, 433, 464
HapII	CCGG	1 cut(s)	484
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	432
HincII	GTYRAC	2 cut(s)	164, 496
HindII	GTYRAC	2 cut(s)	164, 496
HinfI	GANTC	4 cut(s)	218, 253, 501, 512
HpaII	CCGG	1 cut(s)	484
HphI	GGTGA	3 cut(s)	188, 253, 334
Hpy166II	GTNNAC	2 cut(s)	164, 496
Hpy188I	TCNGA	2 cut(s)	202, 258
Hpy188III	TCNNGA	1 cut(s)	547
Hpy8I	GTNNAC	2 cut(s)	164, 496
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	4 cut(s)	178, 262, 355, 391
HpyCH4III	ACNGT	2 cut(s)	38, 238
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 288, 445, 567
HpyF3I	CTNAG	3 cut(s)	192, 257, 505
Hsp92II	CATG	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	402, 549
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	8 cut(s)	38, 240, 352, 458, 479, 497, 538, 549
LweI	GCATC	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	2 cut(s)	404, 551
MbiI	CCGCTC	2 cut(s)	118, 471
MboI	GATC	2 cut(s)	402, 549
MboII	GAAGA	4 cut(s)	112, 370, 419, 470
MfeI	CAATTG	1 cut(s)	276
MflI	RGATCY	1 cut(s)	549
MhlI	GDGCHC	1 cut(s)	145
MlsI	TGGCCA	1 cut(s)	433
MluCI	AATT	3 cut(s)	276, 306, 325
MluNI	TGGCCA	1 cut(s)	433
MlyI	GAGTC	1 cut(s)	510
MmeI	TCCRAC	1 cut(s)	124
Mox20I	TGGCCA	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	433
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	422
Msp20I	TGGCCA	1 cut(s)	433
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	1 cut(s)	484
MunI	CAATTG	1 cut(s)	276
MwoI	GCNNNNNNNGC	4 cut(s)	112, 288, 445, 567
NcoI	CCATGG	1 cut(s)	428
NdeII	GATC	2 cut(s)	402, 549
NlaIII	CATG	1 cut(s)	432
NlaIV	GGNNCC	1 cut(s)	273
NmeAIII	GCCGAG	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	232
PciSI	GCTCTTC	1 cut(s)	125
PfeI	GAWTC	3 cut(s)	218, 253, 512
PflFI	GACNNNGTC	1 cut(s)	500
PkrI	GCNGC	3 cut(s)	117, 293, 450
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	4 cut(s)	38, 55, 369, 463
PspPPI	RGGWCCY	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	549
PsyI	GACNNNGTC	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	422
SalI	GTCGAC	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	3 cut(s)	116, 292, 449
Sau3AI	GATC	2 cut(s)	402, 549
Sau96I	GGNCC	4 cut(s)	38, 55, 369, 463
SchI	GAGTC	1 cut(s)	510
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	7 cut(s)	57, 76, 163, 172, 324, 511, 525
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	1 cut(s)	28
SinI	GGWCC	2 cut(s)	38, 55
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	276, 306, 325
SsiI	CCGC	7 cut(s)	116, 206, 282, 291, 449, 471, 527
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	2 cut(s)	38, 238
TaqI	TCGA	2 cut(s)	163, 405
TasI	AATT	3 cut(s)	276, 306, 325
TauI	GCSGC	3 cut(s)	118, 294, 451
TfiI	GAWTC	3 cut(s)	218, 253, 512
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	406
TspGWI	ACGGA	1 cut(s)	513
Tth111I	GACNNNGTC	1 cut(s)	500
VpaK11BI	GGWCC	2 cut(s)	38, 55
XmiI	GTMKAC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.