RchiOBHm_Chr5g0054211

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002115
Physical Location & Seq
Forward (+)
56662558 .. 56662890
333 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33140

Sequence Viewer

Length: 294 bp
ATGGGTGACGGTCTCTGCGAAGAAAGAAGATGGTTGGTGGAGCTAAGGTTCACCAAAATTTGGTGTGCAGCGAACCAGTTTTCTAGTTGGTTGCCCCGGAAGAGGAAAGCTGCTGAGCGGAGAAGAAGGAAATCGGTTTTGGCGGAGAAGAAGACATGGGTGTCTCTGGGTGCCCAGAGCAGTTTTCTGGGTGCAGAAAGATTTGATTTTTATTTTTTTTTGTTAATCATGTCACCCAACTTTCGTTTTGGGTCCGTCTGCTGGGAGTTGAATGTGAAGAACATGGATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.56

Weight (kDa)

10.03

Isoelectric Point (pI)

67.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 160
AccB1I GGYRCC 1 cut(s) 170
AccB7I CCANNNNNTGG 1 cut(s) 60
AccBSI CCGCTC 1 cut(s) 118
AciI CCGC 2 cut(s) 118, 143
AcsI RAATTY 1 cut(s) 57
AfiI CCNNNNNNNGG 3 cut(s) 60, 102, 261
AgsI TTSAA 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
AluBI AGCT 2 cut(s) 43, 110
AluI AGCT 2 cut(s) 43, 110
Alw26I GTCTC 2 cut(s) 17, 168
ApeKI GCWGC 2 cut(s) 68, 110
ApoI RAATTY 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 252
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 3 cut(s) 17, 43, 225
AvaII GGWCC 1 cut(s) 252
BaeGI GKGCMC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 80, 97
BccI CCATC 1 cut(s) 24
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 17, 168
BfaI CTAG 1 cut(s) 84
BisI GCNGC 2 cut(s) 69, 111
BlpI GCTNAGC 1 cut(s) 114
BlsI GCNGC 2 cut(s) 70, 112
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 2 cut(s) 172, 253
BmrFI CCNGG 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 44
Bpu1102I GCTNAGC 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 102, 261
Bse1I ACTGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 95
BseLI CCNNNNNNNGG 3 cut(s) 60, 102, 261
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 2 cut(s) 80, 97
BseYI CCCAGC 1 cut(s) 261
BsgI GTGCAG 2 cut(s) 87, 213
BshNI GGYRCC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 97
BslI CCNNNNNNNGG 3 cut(s) 60, 102, 261
BsmAI GTCTC 2 cut(s) 17, 168
Bso31I GGTCTC 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 175
Bsp1720I GCTNAGC 1 cut(s) 114
BspACI CCGC 2 cut(s) 118, 143
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 172, 253
BspT107I GGYRCC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 44, 114
BstMAI GTCTC 2 cut(s) 17, 168
BstSCI CCNGG 1 cut(s) 95
BstSLI GKGCMC 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 80, 97
BstV2I GAAGAC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 252
CviAII CATG 3 cut(s) 156, 229, 283
CviJI RGCY 2 cut(s) 43, 110
CviKI_1 RGCY 2 cut(s) 43, 110
DdeI CTNAG 2 cut(s) 44, 114
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 252
FaeI CATG 3 cut(s) 159, 232, 286
FaiI YATR 3 cut(s) 157, 230, 284
FatI CATG 3 cut(s) 155, 228, 282
Fnu4HI GCNGC 2 cut(s) 69, 111
Fsp4HI GCNGC 2 cut(s) 69, 111
FspBI CTAG 1 cut(s) 84
GluI GCNGC 2 cut(s) 69, 111
GsaI CCCAGC 1 cut(s) 265
HapII CCGG 1 cut(s) 97
Hin1II CATG 3 cut(s) 159, 232, 286
HpaII CCGG 1 cut(s) 97
HphI GGTGA 3 cut(s) 17, 43, 225
Hpy166II GTNNAC 1 cut(s) 51
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 68, 194
HpyF3I CTNAG 2 cut(s) 44, 114
Hsp92II CATG 3 cut(s) 159, 232, 286
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 6 cut(s) 89, 110, 152, 173, 188, 247
Lsp1109I GCAGC 2 cut(s) 80, 97
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 5, 231
MbiI CCGCTC 1 cut(s) 118
MboII GAAGA 7 cut(s) 32, 39, 112, 135, 160, 163, 289
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 1 cut(s) 57
MnlI CCTC 1 cut(s) 96
MseI TTAA 1 cut(s) 224
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 97
NciI CCSGG 1 cut(s) 97
NlaIII CATG 3 cut(s) 159, 232, 286
NlaIV GGNNCC 2 cut(s) 172, 253
NmuCI GTSAC 2 cut(s) 5, 231
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PflMI CCANNNNNTGG 1 cut(s) 60
PkrI GCNGC 2 cut(s) 70, 112
PspFI CCCAGC 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 172, 253
PspPI GGNCC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 2 cut(s) 69, 111
Sau96I GGNCC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 175
SetI ASST 3 cut(s) 45, 50, 112
SinI GGWCC 1 cut(s) 252
Sse9I AATT 1 cut(s) 57
SsiI CCGC 2 cut(s) 118, 143
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 11
TasI AATT 1 cut(s) 57
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TseFI GTSAC 2 cut(s) 5, 231
TseI GCWGC 2 cut(s) 68, 110
Tsp45I GTSAC 2 cut(s) 5, 231
TspGWI ACGGA 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 252
XapI RAATTY 1 cut(s) 57
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.