Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009656.1

Orthogroup ID

OG0002115

Physical Location & Seq

Genomic Coordinates Forward (+)

18787 .. 20086

Gene Structure 1300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009656.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggcggtagagggtgcagcggcatctctcaccttgtcagaggaggtcgtagtgaaccttgggggggggggggggggtgaggaggagaaggatgctgaggtttcagaggaggggggatcgtcgcagccggtgaggctgtggaatctgaggacgaggaaggctccaattggcggtggtggcggcaaggggttgaaaattgaggagagaaaggtgaattacttgccgttggggagtgaggctctggagaagaaggacaggcccaagttttcactcactctctccaagaaggagatcgaagaggatttcatacagatgctaggacatcgccctcccgccgccccaagaagaggcccagagtggtgcagaagcaattggatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

126

Amino Acids

13.63

Weight (kDa)

5.95

Isoelectric Point (pI)

72.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25370 AT1G25370 AT1G68340 AT1G68340 AT1G68340
fragaria_vesca	FvH4_4g27050
malus_domestica	MD13G1039500.v1.1 MD16G1040400.v1.1
prunus_persica	Prupe.1G313700_v2.0.a1 Prupe.1G313700_v2.0.a1
pyrus_communis	pycom05g23430 pycom13g03400 pycom13g29000 pycom15g37110 pycom16g03510 pycom17g22390
rosa_chinensis	RchiOBHm_Chr2g0122051 RchiOBHm_Chr4g0434851 RchiOBHm_Chr5g0054211
rosa_laevigata	RLG00000001525 RLG00000006641 RLG00000020224
rosa_multiflora	Rmu_sc0000674.1_g000025 Rmu_sc0002398.1_g000003 Rmu_sc0003726.1_g000003 Rmu_sc0005624.1_g000003 Rmu_sc0009656.1_g000005
rosa_roxburghii	Rroxscaffold_156G00440310 Rroxscaffold_5G00342830 Rroxscaffold_5G00376060 Rroxscaffold_5G00383210
rosa_rugosa	Rorug04G0279400 Rorug04G0279500 Rorug04G0279600
rosa_samantha	Rh1AG099900 Rh2BG456800 Rh4CG259900 Rh4CG358400 Rh4DG337900 Rh7CG341700 Rh7CG453800 Rh7DG393600
rosa_wichuraiana	Rw4G029260 Rw7G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	5, 20, 171, 180, 333, 336
AclWI	GGATC	1 cut(s)	124
AfiI	CCNNNNNNNGG	3 cut(s)	64, 170, 347
AgsI	TTSAA	1 cut(s)	193
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	2 cut(s)	257, 349
ApeKI	GCWGC	2 cut(s)	17, 124
AspS9I	GGNCC	2 cut(s)	258, 350
AsuHPI	GGTGA	4 cut(s)	22, 89, 142, 223
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	29, 136
BceAI	ACGGC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	133
BisI	GCNGC	5 cut(s)	18, 21, 125, 181, 336
BlsI	GCNGC	5 cut(s)	19, 22, 126, 182, 337
BmgT120I	GGNCC	2 cut(s)	258, 350
BmiI	GGNNCC	1 cut(s)	162
BmsI	GCATC	3 cut(s)	32, 82, 303
BplI	GAGNNNNNCTC	4 cut(s)	145, 177, 223, 255
BpmI	CTGGAG	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 170, 347
Bse118I	RCCGGY	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	3 cut(s)	64, 170, 347
BseMII	CTCAG	2 cut(s)	87, 137
BseRI	GAGGAG	5 cut(s)	56, 95, 98, 122, 215
BseXI	GCAGC	2 cut(s)	29, 136
BsgI	GTGCAG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	259, 351
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	3 cut(s)	64, 170, 347
BsnI	GGCC	2 cut(s)	259, 351
Bsp143I	GATC	2 cut(s)	116, 291
BspACI	CCGC	6 cut(s)	5, 20, 171, 180, 333, 336
BspANI	GGCC	2 cut(s)	259, 351
BspCNI	CTCAG	2 cut(s)	88, 138
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	2 cut(s)	116, 291
BssT1I	CCWWGG	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	291, 340
BstDEI	CTNAG	2 cut(s)	96, 146
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	119, 294
BstMBI	GATC	2 cut(s)	116, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 177
BstV1I	GCAGC	2 cut(s)	29, 136
BsuRI	GGCC	2 cut(s)	259, 351
BtgZI	GCGATG	1 cut(s)	308
BtsCI	GGATG	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	258, 350
CviJI	RGCY	6 cut(s)	127, 136, 161, 239, 259, 351
CviKI_1	RGCY	6 cut(s)	127, 136, 161, 239, 259, 351
DdeI	CTNAG	2 cut(s)	96, 146
DpnI	GATC	2 cut(s)	118, 293
DpnII	GATC	2 cut(s)	116, 291
Eam1104I	CTCTTC	2 cut(s)	291, 340
EarI	CTCTTC	2 cut(s)	291, 340
Eco130I	CCWWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaiI	YATR	2 cut(s)	308, 379
FauI	CCCGC	1 cut(s)	340
Fnu4HI	GCNGC	5 cut(s)	18, 21, 125, 181, 336
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	5 cut(s)	18, 21, 125, 181, 336
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	5 cut(s)	18, 21, 125, 181, 336
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	259, 351
HapII	CCGG	1 cut(s)	128
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	4 cut(s)	22, 89, 142, 223
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	40, 106, 147
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	4 cut(s)	82, 151, 244, 280
HpyCH4V	TGCA	2 cut(s)	17, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 177
HpyF3I	CTNAG	2 cut(s)	96, 146
Kzo9I	GATC	2 cut(s)	116, 291
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	4 cut(s)	141, 227, 241, 366
Lsp1109I	GCAGC	2 cut(s)	29, 136
LweI	GCATC	3 cut(s)	32, 82, 303
MaeI	CTAG	1 cut(s)	317
MalI	GATC	2 cut(s)	118, 293
MboI	GATC	2 cut(s)	116, 291
MboII	GAAGA	3 cut(s)	259, 308, 357
MfeI	CAATTG	2 cut(s)	165, 370
MluCI	AATT	4 cut(s)	165, 195, 214, 370
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	128
MunI	CAATTG	2 cut(s)	165, 370
MwoI	GCNNNNNNNGC	2 cut(s)	133, 177
NdeII	GATC	2 cut(s)	116, 291
NlaIV	GGNNCC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	5 cut(s)	19, 22, 126, 182, 337
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	258, 350
RseI	CAYNNNNRTG	1 cut(s)	311
SatI	GCNGC	5 cut(s)	18, 21, 125, 181, 336
Sau3AI	GATC	2 cut(s)	116, 291
Sau96I	GGNCC	2 cut(s)	258, 350
SetI	ASST	5 cut(s)	35, 48, 60, 102, 213
SfaNI	GCATC	3 cut(s)	32, 82, 303
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	4 cut(s)	165, 195, 214, 370
SsiI	CCGC	6 cut(s)	5, 20, 171, 180, 333, 336
SspMI	CTAG	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	58
TaqI	TCGA	1 cut(s)	294
TasI	AATT	4 cut(s)	165, 195, 214, 370
TauI	GCSGC	3 cut(s)	23, 183, 338
TfiI	GAWTC	1 cut(s)	142
TseI	GCWGC	2 cut(s)	17, 124
TspDTI	ATGAA	1 cut(s)	295
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.