Rh1AG099900

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002115
Physical Location & Seq
Forward (+)
17490794 .. 17500927
10134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG099900.1

Sequence Viewer

Length: 333 bp
ATGAGGAAGGCTCCAATTGGCGGTGGTGGCGGCAAGGGGTTGAAAATTAAGGAGAGAAAGGTGAATTACTTGTCGTTTAGGAGTGAGGCTATGGAGAAGAAGGACGGGCCCAAGTTCTCACTCACTCTCTCCAAGAAGGAGATCGAAGAGGATTTCATACAGATGCTCGGCCACTGCCCTCCCGGCCGCCCCAAGAAGTCGCCTAGAGCGGTGCAGAAGCAATTGGATATAAGCGTTGTTTTCCGGTATGTGGTTGATGAAGTCTCAGCTGATTCGTACAAGGTTGCGGAGTTCCCTAAAAATGGCAAGATAAAGGTTGGCCAACGCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

110

Amino Acids

12.32

Weight (kDa)

9.92

Isoelectric Point (pI)

31.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 43 - 93 4.2e-16 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 209
AciI CCGC 5 cut(s) 21, 30, 187, 209, 287
AcoI YGGCCR 3 cut(s) 169, 184, 319
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 3 cut(s) 20, 250, 302
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 268
AoxI GGCC 4 cut(s) 107, 169, 184, 319
ApaI GGGCCC 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 107, 108
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 111
BalI TGGCCA 1 cut(s) 321
BanII GRGCYC 1 cut(s) 111
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 1 cut(s) 204
BglI GCCNNNNNGGC 1 cut(s) 183
BisI GCNGC 2 cut(s) 31, 187
BlsI GCNGC 2 cut(s) 32, 188
Bme1390I CCNGG 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 107, 108
BmiI GGNNCC 2 cut(s) 12, 109
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 153
BplI GAGNNNNNCTC 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 250, 302
BseLI CCNNNNNNNGG 3 cut(s) 20, 250, 302
BseMII CTCAG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 111
BseX3I CGGCCG 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 233
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 4 cut(s) 109, 171, 186, 321
BsiEI CGRYCG 1 cut(s) 187
BsiSI CCGG 2 cut(s) 183, 244
BslI CCNNNNNNNGG 3 cut(s) 20, 250, 302
BsmAI GTCTC 1 cut(s) 268
BsnI GGCC 4 cut(s) 109, 171, 186, 321
Bsp120I GGGCCC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 5 cut(s) 21, 30, 187, 209, 287
BspANI GGCC 4 cut(s) 109, 171, 186, 321
BspCNI CTCAG 1 cut(s) 278
BspLI GGNNCC 2 cut(s) 12, 109
BsrBI CCGCTC 1 cut(s) 209
BssMI GATC 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 265
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 1 cut(s) 141
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 27, 183
BstSCI CCNGG 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 111
BstZI CGGCCG 1 cut(s) 184
BsuRI GGCC 4 cut(s) 109, 171, 186, 321
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 107, 108
Csp6I GTAC 1 cut(s) 277
CviJI RGCY 7 cut(s) 11, 89, 109, 171, 186, 269, 321
CviKI_1 RGCY 7 cut(s) 11, 89, 109, 171, 186, 269, 321
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 1 cut(s) 265
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
EaeI YGGCCR 3 cut(s) 169, 184, 319
EagI CGGCCG 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EclXI CGGCCG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 111
Eco52I CGGCCG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 111
FaiI YATR 5 cut(s) 92, 158, 230, 249, 331
Fnu4HI GCNGC 2 cut(s) 31, 187
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 31, 187
FspBI CTAG 1 cut(s) 204
GluI GCNGC 2 cut(s) 31, 187
HaeIII GGCC 4 cut(s) 109, 171, 186, 321
HapII CCGG 2 cut(s) 183, 244
HinfI GANTC 1 cut(s) 272
HpaII CCGG 2 cut(s) 183, 244
HphI GGTGA 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 94, 130
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 183
HpyF3I CTNAG 1 cut(s) 265
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 2 cut(s) 196, 257
LweI GCATC 1 cut(s) 153
MaeI CTAG 1 cut(s) 204
MalI GATC 1 cut(s) 143
MbiI CCGCTC 1 cut(s) 209
MboI GATC 1 cut(s) 141
MboII GAAGA 2 cut(s) 109, 158
MfeI CAATTG 2 cut(s) 15, 221
MhlI GDGCHC 1 cut(s) 111
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 4 cut(s) 15, 45, 64, 221
MluNI TGGCCA 1 cut(s) 321
MnlI CCTC 3 cut(s) 79, 142, 189
Mox20I TGGCCA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 321
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 2 cut(s) 183, 244
MspR9I CCNGG 1 cut(s) 183
MunI CAATTG 2 cut(s) 15, 221
MwoI GCNNNNNNNGC 2 cut(s) 27, 183
NciI CCSGG 1 cut(s) 183
NdeII GATC 1 cut(s) 141
NlaIV GGNNCC 2 cut(s) 12, 109
NmeAIII GCCGAG 1 cut(s) 147
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 2 cut(s) 32, 188
PspN4I GGNNCC 2 cut(s) 12, 109
PspOMI GGGCCC 1 cut(s) 107
PspPI GGNCC 2 cut(s) 107, 108
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 2 cut(s) 31, 187
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 2 cut(s) 107, 108
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 1 cut(s) 111
SetI ASST 4 cut(s) 63, 271, 285, 318
SfaNI GCATC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 4 cut(s) 15, 45, 64, 221
SsiI CCGC 5 cut(s) 21, 30, 187, 209, 287
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 181
TaqI TCGA 1 cut(s) 144
TasI AATT 4 cut(s) 15, 45, 64, 221
TauI GCSGC 2 cut(s) 33, 189
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 145, 273
TspRI CASTG 1 cut(s) 179
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.