Rroxscaffold_5G00383210

Protein of unknown function (DUF1639)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
62872841 .. 62875558
2718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383210.1

Sequence Viewer

Length: 321 bp
ATGAAGGGGAAAGGGAGAAAGAGCTTGAGGGAGTTGAAGGATTTTGTCAATAACATGGTCAGTTGGGCCAGAGGCCGAAGTTGCCAGCGAGATCGAGGAAGTTACAGGTACGACTGGTTTGGAGGTGGTGTGGCATTTCGGAAAGACGGAAACGACGGAGAGGATGGCGTTTCCGATCAATGGTGTATACAAGGGGGTTGGAGGAGAGAACGAGTGGTAGCCGCTAAGTCGTCCTCGGCGGCGAAGCCTCTGCACAATTTCAGTTTGCCGTGGGATTTGAAGTGGGGGAACCAGAAGGTGGATTGCATCGGCGGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

11.98

Weight (kDa)

9.81

Isoelectric Point (pI)

21.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 298
AccI GTMKAC 1 cut(s) 187
AciI CCGC 3 cut(s) 222, 239, 312
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 180, 298
AgsI TTSAA 2 cut(s) 37, 280
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
AoxI GGCC 2 cut(s) 66, 73
AspS9I GGNCC 1 cut(s) 66
BccI CCATC 1 cut(s) 158
BceAI ACGGC 1 cut(s) 253
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BisI GCNGC 2 cut(s) 222, 240
BlsI GCNGC 2 cut(s) 223, 241
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 290
BmsI GCATC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 234, 269
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 298
Bse1I ACTGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 234, 269
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 180, 298
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 217
BsgI GTGCAG 1 cut(s) 236
BshFI GGCC 2 cut(s) 68, 75
BslI CCNNNNNNNGG 2 cut(s) 180, 298
BsnI GGCC 2 cut(s) 68, 75
Bsp143I GATC 2 cut(s) 91, 175
BspACI CCGC 3 cut(s) 222, 239, 312
BspANI GGCC 2 cut(s) 68, 75
BspLI GGNNCC 1 cut(s) 290
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 2 cut(s) 234, 269
BssMI GATC 2 cut(s) 91, 175
BssNAI GTATAC 1 cut(s) 188
Bst1107I GTATAC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 2 cut(s) 94, 178
BstMBI GATC 2 cut(s) 91, 175
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstZ17I GTATAC 1 cut(s) 188
BsuRI GGCC 2 cut(s) 68, 75
BtgI CCRYGG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 109
CviAII CATG 1 cut(s) 55
CviJI RGCY 5 cut(s) 24, 68, 75, 221, 247
CviKI_1 RGCY 5 cut(s) 24, 68, 75, 221, 247
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 225
DpnI GATC 2 cut(s) 93, 177
DpnII GATC 2 cut(s) 91, 175
FaeI CATG 1 cut(s) 58
FaiI YATR 2 cut(s) 56, 188
FatI CATG 1 cut(s) 54
FauI CCCGC 1 cut(s) 305
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 222, 240
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 2 cut(s) 222, 240
GluI GCNGC 2 cut(s) 222, 240
HaeIII GGCC 2 cut(s) 68, 75
Hin1II CATG 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 2 cut(s) 141, 175
Hpy8I GTNNAC 1 cut(s) 188
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 31, 289
HpyCH4V TGCA 2 cut(s) 253, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 2 cut(s) 91, 175
LpnPI CCDG 5 cut(s) 82, 91, 98, 100, 305
LweI GCATC 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 101
MalI GATC 2 cut(s) 93, 177
MboI GATC 2 cut(s) 91, 175
MluCI AATT 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 8 cut(s) 21, 65, 89, 116, 154, 195, 244, 258
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 2 cut(s) 91, 175
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 290
NmeAIII GCCGAG 1 cut(s) 215
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 2 cut(s) 223, 241
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 1 cut(s) 66
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SatI GCNGC 2 cut(s) 222, 240
Sau3AI GATC 2 cut(s) 91, 175
Sau96I GGNCC 1 cut(s) 66
SetI ASST 4 cut(s) 26, 110, 127, 300
SfaNI GCATC 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 1 cut(s) 256
SsiI CCGC 3 cut(s) 222, 239, 312
TaqI TCGA 1 cut(s) 94
TasI AATT 1 cut(s) 256
TauI GCSGC 2 cut(s) 224, 242
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 162, 171
Van91I CCANNNNNTGG 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.