Rorug04G0279600

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002115
Physical Location & Seq
Forward (+)
45243551 .. 45244812
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0279600.1

Sequence Viewer

Length: 903 bp
ATGTTCGGTACGGCAGTACCGTACCATAGCTTCGGTAACCAAATCTCTCGGCGCCGACTGCAACGGTTCGGCCGGTTTGCGGCTGGTTTCGACAGGTTTGGTATTTCAAGCCAGCCCTACTTAAATTCAAGTTCACTCACGTACATACAGCAGCTCGATCTCAGCTGCCCTCTGTTCGATCTCCTTTGGTCGCTATTAATTAACTCCAACGTGCAATGTCTTGAGGAATCCAAGAAAACCGTTGTTTCAGTCGGGCCGTTTGGATCATTGGATGAGCGAGCAAAACGCTTTGATGATGGAATACACTCAGCAGTTACAGGTCTGATGATAACTTATTTGAGAGATTACAAACTTGACTACGTCCAGTTTGAATATTACGACGACGGAATCTCAGTTTCGTCAGACAGGCATGGTAAACAGAGCATTGGGGTAGCGCTCTTTGAGGGGCTCTCCGGCCCCAGCGTCAGAAACCAAGGCTTATACATCAGGTTCAATTATCCAGACGAATTTTTGACTTCAGTTCATGGATGTTATGTAGCAGACAAGACCGGGTGCCTTGTCATCTCGCTTACATTTATCACCAACAGAAAAACTTATGGACCCTTTGGCTGGACTACTCAAGATCCCATCATAACAGGCTCTTTTTCAATTCATGTGTCTGGAAGTCAGATTGTTGGCTTTCATGGCACATTAAACAAGTTGGGTGGTATTAGTTCACTAGGAGCCTACCTAAAGCCTCATGATCAACAAACTGGATATCCTCCGTCACCAGCTCTGATGCTTTATCCATCAAAGCCTCCACATCCACATGATGGATATCCTTATCAAACCAAGCTCAAGAAAGATGATGACGAACCTCAAAAGCAGAAACATTATGAAATTTCAAATATTCGATCGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

300

Amino Acids

33.58

Weight (kDa)

8.22

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 84 - 243 2e-22 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 51, 552
AccB7I CCANNNNNTGG 1 cut(s) 812
AciI CCGC 1 cut(s) 80
AclWI GGATC 2 cut(s) 271, 617
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 3 cut(s) 124, 506, 879
AcuI CTGAAG 1 cut(s) 501
AcyI GRCGYC 1 cut(s) 52
AfaI GTAC 4 cut(s) 10, 18, 23, 143
AfeI AGCGCT 1 cut(s) 435
AfiI CCNNNNNNNGG 3 cut(s) 79, 609, 812
AgsI TTSAA 6 cut(s) 108, 129, 371, 493, 648, 885
AluBI AGCT 5 cut(s) 30, 154, 165, 773, 835
AluI AGCT 5 cut(s) 30, 154, 165, 773, 835
AlwI GGATC 2 cut(s) 271, 617
Aor51HI AGCGCT 1 cut(s) 435
AoxI GGCC 3 cut(s) 70, 254, 454
ApeKI GCWGC 2 cut(s) 151, 165
ApoI RAATTY 3 cut(s) 124, 506, 879
AseI ATTAAT 1 cut(s) 197
AspLEI GCGC 2 cut(s) 54, 436
AspS9I GGNCC 3 cut(s) 254, 455, 599
AsuC2I CCSGG 1 cut(s) 550
AsuHPI GGTGA 2 cut(s) 571, 759
AvaII GGWCC 1 cut(s) 599
BaeI ACNNNNGTAYC 2 cut(s) 33, 33
BanI GGYRCC 2 cut(s) 51, 552
BanII GRGCYC 1 cut(s) 450
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
BbvI GCAGC 2 cut(s) 152, 163
BccI CCATC 4 cut(s) 290, 635, 796, 806
BceAI ACGGC 2 cut(s) 27, 241
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 1 cut(s) 550
BfaI CTAG 1 cut(s) 719
BfoI RGCGCY 2 cut(s) 55, 437
BisI GCNGC 3 cut(s) 81, 152, 166
BlsI GCNGC 3 cut(s) 82, 153, 167
Bme1390I CCNGG 1 cut(s) 550
Bme18I GGWCC 1 cut(s) 599
BmgT120I GGNCC 3 cut(s) 254, 455, 599
BmiI GGNNCC 5 cut(s) 53, 457, 554, 601, 724
BmrFI CCNGG 1 cut(s) 550
BmsI GCATC 1 cut(s) 768
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpuEI CTTGAG 3 cut(s) 242, 603, 821
BpuMI CCSGG 1 cut(s) 550
BsaAI YACGTR 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 816
BsaHI GRCGYC 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 472
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 609, 812
Bse118I RCCGGY 1 cut(s) 72
Bse1I ACTGG 2 cut(s) 364, 757
Bse3DI GCAATG 1 cut(s) 221
Bse8I GATNNNNATC 1 cut(s) 816
BseDI CCNNGG 1 cut(s) 472
BseGI GGATG 3 cut(s) 277, 533, 802
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 3 cut(s) 79, 609, 812
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 3 cut(s) 175, 321, 405
BseNI ACTGG 2 cut(s) 364, 757
BseX3I CGGCCG 1 cut(s) 70
BseXI GCAGC 2 cut(s) 152, 163
BseYI CCCAGC 1 cut(s) 458
Bsh1285I CGRYCG 2 cut(s) 73, 896
BshFI GGCC 3 cut(s) 72, 256, 456
BshNI GGYRCC 2 cut(s) 51, 552
BsiEI CGRYCG 2 cut(s) 73, 896
BsiSI CCGG 3 cut(s) 73, 453, 549
BslI CCNNNNNNNGG 3 cut(s) 79, 609, 812
BsnI GGCC 3 cut(s) 72, 256, 456
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 6 cut(s) 157, 178, 263, 622, 742, 893
BspACI CCGC 1 cut(s) 80
BspANI GGCC 3 cut(s) 72, 256, 456
BspCNI CTCAG 3 cut(s) 174, 320, 404
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 5 cut(s) 53, 457, 554, 601, 724
BspPI GGATC 2 cut(s) 271, 617
BspT107I GGYRCC 2 cut(s) 51, 552
BsrDI GCAATG 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 72
BsrI ACTGG 2 cut(s) 364, 757
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 472
BssMI GATC 6 cut(s) 157, 178, 263, 622, 742, 893
BssNI GRCGYC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 472
Bst4CI ACNGT 3 cut(s) 21, 66, 241
BstACI GRCGYC 1 cut(s) 52
BstBAI YACGTR 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 113, 279
BstDEI CTNAG 3 cut(s) 161, 307, 391
BstEII GGTNACC 1 cut(s) 35
BstF5I GGATG 3 cut(s) 277, 533, 802
BstH2I RGCGCY 2 cut(s) 55, 437
BstHHI GCGC 2 cut(s) 54, 436
BstKTI GATC 6 cut(s) 160, 181, 266, 625, 745, 896
BstMBI GATC 6 cut(s) 157, 178, 263, 622, 742, 893
BstMCI CGRYCG 2 cut(s) 73, 896
BstMWI GCNNNNNNNGC 2 cut(s) 58, 684
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 548
BstV1I GCAGC 2 cut(s) 152, 163
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BstZI CGGCCG 1 cut(s) 70
BsuRI GGCC 3 cut(s) 72, 256, 456
BtsCI GGATG 3 cut(s) 277, 533, 802
Cac8I GCNNGC 2 cut(s) 113, 279
CciI TCATGA 1 cut(s) 739
CfoI GCGC 2 cut(s) 54, 436
Cfr10I RCCGGY 1 cut(s) 72
Cfr13I GGNCC 3 cut(s) 254, 455, 599
CseI GACGC 1 cut(s) 451
Csp6I GTAC 4 cut(s) 9, 17, 22, 142
CspCI CAANNNNNGTGG 2 cut(s) 685, 720
CviAII CATG 6 cut(s) 410, 524, 653, 683, 740, 809
CviQI GTAC 4 cut(s) 9, 17, 22, 142
DdeI CTNAG 3 cut(s) 161, 307, 391
DinI GGCGCC 1 cut(s) 53
DpnI GATC 6 cut(s) 159, 180, 265, 624, 744, 895
DpnII GATC 6 cut(s) 157, 178, 263, 622, 742, 893
EaeI YGGCCR 1 cut(s) 70
EagI CGGCCG 1 cut(s) 70
EclXI CGGCCG 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 472
Eco24I GRGCYC 1 cut(s) 450
Eco32I GATATC 2 cut(s) 758, 818
Eco47I GGWCC 1 cut(s) 599
Eco47III AGCGCT 1 cut(s) 435
Eco52I CGGCCG 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 501
Eco91I GGTNACC 1 cut(s) 35
EcoO65I GGTNACC 1 cut(s) 35
EcoRV GATATC 2 cut(s) 758, 818
EcoT14I CCWWGG 1 cut(s) 472
EcoT38I GRGCYC 1 cut(s) 450
EgeI GGCGCC 1 cut(s) 53
EheI GGCGCC 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 6 cut(s) 413, 527, 656, 686, 743, 812
FatI CATG 6 cut(s) 409, 523, 652, 682, 739, 808
FbaI TGATCA 1 cut(s) 742
Fnu4HI GCNGC 3 cut(s) 81, 152, 166
FokI GGATG 3 cut(s) 284, 540, 789
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 3 cut(s) 81, 152, 166
FspBI CTAG 1 cut(s) 719
GlaI GCGC 2 cut(s) 53, 435
GluI GCNGC 3 cut(s) 81, 152, 166
GsaI CCCAGC 1 cut(s) 462
HaeII RGCGCY 2 cut(s) 55, 437
HaeIII GGCC 3 cut(s) 72, 256, 456
HapII CCGG 3 cut(s) 73, 453, 549
HgaI GACGC 1 cut(s) 451
HhaI GCGC 2 cut(s) 54, 436
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 6 cut(s) 413, 527, 656, 686, 743, 812
Hin6I GCGC 2 cut(s) 52, 434
HinP1I GCGC 2 cut(s) 52, 434
HinfI GANTC 2 cut(s) 227, 387
HpaII CCGG 3 cut(s) 73, 453, 549
HphI GGTGA 2 cut(s) 571, 759
Hpy166II GTNNAC 3 cut(s) 134, 416, 716
Hpy188I TCNGA 5 cut(s) 324, 403, 467, 669, 777
Hpy188III TCNNGA 6 cut(s) 221, 500, 620, 660, 740, 838
Hpy8I GTNNAC 3 cut(s) 134, 416, 716
Hpy99I CGWCG 2 cut(s) 383, 386
HpyCH4III ACNGT 3 cut(s) 21, 66, 241
HpyCH4IV ACGT 3 cut(s) 140, 210, 360
HpyCH4V TGCA 2 cut(s) 61, 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 684
HpyF3I CTNAG 3 cut(s) 161, 307, 391
HpySE526I ACGT 3 cut(s) 140, 210, 360
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 6 cut(s) 413, 527, 656, 686, 743, 812
HspAI GCGC 2 cut(s) 52, 434
KasI GGCGCC 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 6 cut(s) 157, 178, 263, 622, 742, 893
LmnI GCTCC 1 cut(s) 722
Lsp1109I GCAGC 2 cut(s) 152, 163
LweI GCATC 1 cut(s) 768
MaeI CTAG 1 cut(s) 719
MaeII ACGT 3 cut(s) 140, 210, 360
MaeIII GTNAC 3 cut(s) 35, 313, 765
MalI GATC 6 cut(s) 159, 180, 265, 624, 744, 895
MboI GATC 6 cut(s) 157, 178, 263, 622, 742, 893
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 6 cut(s) 124, 198, 493, 506, 648, 879
Mly113I GGCGCC 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 7 cut(s) 180, 217, 436, 747, 771, 807, 867
MseI TTAA 4 cut(s) 122, 197, 201, 692
MslI CAYNNNNRTG 1 cut(s) 807
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 3 cut(s) 73, 453, 549
MspR9I CCNGG 1 cut(s) 550
MwoI GCNNNNNNNGC 2 cut(s) 58, 684
NarI GGCGCC 1 cut(s) 52
NciI CCSGG 1 cut(s) 550
NdeII GATC 6 cut(s) 157, 178, 263, 622, 742, 893
NlaIII CATG 6 cut(s) 413, 527, 656, 686, 743, 812
NlaIV GGNNCC 5 cut(s) 53, 457, 554, 601, 724
NmeAIII GCCGAG 1 cut(s) 28
NmuCI GTSAC 1 cut(s) 765
PacI TTAATTAA 1 cut(s) 201
PagI TCATGA 1 cut(s) 739
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PfeI GAWTC 2 cut(s) 227, 387
PflFI GACNNNGTC 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 812
PkrI GCNGC 3 cut(s) 82, 153, 167
Ple19I CGATCG 1 cut(s) 896
PluTI GGCGCC 1 cut(s) 55
Ppu21I YACGTR 1 cut(s) 141
PshBI ATTAAT 1 cut(s) 197
PspEI GGTNACC 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 458
PspN4I GGNNCC 5 cut(s) 53, 457, 554, 601, 724
PspPI GGNCC 3 cut(s) 254, 455, 599
PsuI RGATCY 1 cut(s) 622
PsyI GACNNNGTC 1 cut(s) 359
PvuI CGATCG 1 cut(s) 896
PvuII CAGCTG 1 cut(s) 165
RsaI GTAC 4 cut(s) 10, 18, 23, 143
RsaNI GTAC 4 cut(s) 9, 17, 22, 142
RseI CAYNNNNRTG 1 cut(s) 807
SaqAI TTAA 4 cut(s) 122, 197, 201, 692
SatI GCNGC 3 cut(s) 81, 152, 166
Sau3AI GATC 6 cut(s) 157, 178, 263, 622, 742, 893
Sau96I GGNCC 3 cut(s) 254, 455, 599
ScrFI CCNGG 1 cut(s) 550
SduI GDGCHC 1 cut(s) 450
SfaNI GCATC 1 cut(s) 768
SfoI GGCGCC 1 cut(s) 53
SinI GGWCC 1 cut(s) 599
SmiMI CAYNNNNRTG 1 cut(s) 807
SmlI CTYRAG 3 cut(s) 221, 618, 836
SmoI CTYRAG 3 cut(s) 221, 618, 836
Sse9I AATT 6 cut(s) 124, 198, 493, 506, 648, 879
SsiI CCGC 1 cut(s) 80
SspDI GGCGCC 1 cut(s) 51
SspI AATATT 2 cut(s) 374, 889
SspMI CTAG 1 cut(s) 719
StyD4I CCNGG 1 cut(s) 548
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 3 cut(s) 21, 66, 241
TaiI ACGT 3 cut(s) 143, 213, 363
TaqI TCGA 5 cut(s) 90, 156, 177, 892, 896
TasI AATT 6 cut(s) 124, 198, 493, 506, 648, 879
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 2 cut(s) 227, 387
Tru1I TTAA 4 cut(s) 122, 197, 201, 692
Tru9I TTAA 4 cut(s) 122, 197, 201, 692
TseFI GTSAC 1 cut(s) 765
TseI GCWGC 2 cut(s) 151, 165
Tsp45I GTSAC 1 cut(s) 765
TspDTI ATGAA 4 cut(s) 512, 641, 671, 891
TspGWI ACGGA 2 cut(s) 399, 753
Tth111I GACNNNGTC 1 cut(s) 359
Van91I CCANNNNNTGG 1 cut(s) 812
VpaK11BI GGWCC 1 cut(s) 599
VspI ATTAAT 1 cut(s) 197
XapI RAATTY 3 cut(s) 124, 506, 879
XspI CTAG 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.