Rroxscaffold_5G00342830

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002115
Physical Location & Seq
Forward (+)
11981731 .. 11985574
3844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342830.1

Sequence Viewer

Length: 342 bp
ATGCTTCACATCCTTCCTCAGGATATAGTAGATAAAATAATTGCAATTCCTGTTCACCCAATGACAGATGTGTTTATTTTGGGTCCAGTTGGGTTGGAGAAGGACGCCGAGGTTTCGGAGGCGGAGGGGAGGCTGCGGAATTTGAGGACGAGGAAGGCTCCAATTAGCGATGGTGGCGGCAAGGGGTTGAAAATTGAGGAGAGAAAGGTGAATTACTTGCCATTGAGGAGTGAGGCTTTGGAGAAGAAGGACAGGCCCAAGTTTTCACTCACTCTCTCCAAGAAGGAGATCGAAGAGGATTTCATACAGATGCCATGGCCACCGCCCTCCCCGCCGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

113

Amino Acids

12.71

Weight (kDa)

6.74

Isoelectric Point (pI)

68.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 122, 136, 177, 323, 332, 335
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 1 cut(s) 139
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 1 cut(s) 190
AoxI GGCC 2 cut(s) 254, 317
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 139
AspS9I GGNCC 2 cut(s) 83, 255
AsuHPI GGTGA 2 cut(s) 47, 220
AvaII GGWCC 1 cut(s) 83
AxyI CCTNAGG 1 cut(s) 18
BalI TGGCCA 1 cut(s) 319
BbvI GCAGC 1 cut(s) 120
BccI CCATC 1 cut(s) 164
BisI GCNGC 3 cut(s) 134, 178, 335
BlsI GCNGC 3 cut(s) 135, 179, 336
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 83, 255
BmiI GGNNCC 2 cut(s) 84, 159
BmsI GCATC 1 cut(s) 300
BplI GAGNNNNNCTC 2 cut(s) 142, 174
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 108, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 86
Bse21I CCTNAGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 108, 314
BseGI GGATG 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 2 cut(s) 212, 241
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 2 cut(s) 256, 319
BslI CCNNNNNNNGG 1 cut(s) 19
BsnI GGCC 2 cut(s) 256, 319
Bsp143I GATC 1 cut(s) 288
Bsp19I CCATGG 1 cut(s) 314
BspACI CCGC 6 cut(s) 122, 136, 177, 323, 332, 335
BspANI GGCC 2 cut(s) 256, 319
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 84, 159
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 108, 314
BssMI GATC 1 cut(s) 288
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 314
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 314
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 9
BstKTI GATC 1 cut(s) 291
BstMBI GATC 1 cut(s) 288
BstMWI GCNNNNNNNGC 2 cut(s) 174, 331
BstV1I GCAGC 1 cut(s) 120
Bsu36I CCTNAGG 1 cut(s) 18
BsuRI GGCC 2 cut(s) 256, 319
BtgI CCRYGG 1 cut(s) 314
BtgZI GCGATG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 9
Cfr13I GGNCC 2 cut(s) 83, 255
CseI GACGC 1 cut(s) 113
CviAII CATG 1 cut(s) 315
CviJI RGCY 5 cut(s) 133, 158, 236, 256, 319
CviKI_1 RGCY 5 cut(s) 133, 158, 236, 256, 319
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
EciI GGCGGA 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 83
Eco81I CCTNAGG 1 cut(s) 18
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoT14I CCWWGG 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 1 cut(s) 318
FaiI YATR 3 cut(s) 26, 305, 316
FatI CATG 1 cut(s) 314
FauI CCCGC 1 cut(s) 339
Fnu4HI GCNGC 3 cut(s) 134, 178, 335
Fsp4HI GCNGC 3 cut(s) 134, 178, 335
GluI GCNGC 3 cut(s) 134, 178, 335
HaeIII GGCC 2 cut(s) 256, 319
HgaI GACGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 318
HphI GGTGA 2 cut(s) 47, 220
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 5 cut(s) 23, 94, 148, 241, 277
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 331
HpyF3I CTNAG 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 318
Kzo9I GATC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 4 cut(s) 5, 63, 99, 238
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 1 cut(s) 300
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 2 cut(s) 256, 305
MlsI TGGCCA 1 cut(s) 319
MluCI AATT 6 cut(s) 39, 45, 139, 162, 192, 211
MluNI TGGCCA 1 cut(s) 319
MmeI TCCRAC 1 cut(s) 75
Mox20I TGGCCA 1 cut(s) 319
MscI TGGCCA 1 cut(s) 319
MslI CAYNNNNRTG 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 319
MwoI GCNNNNNNNGC 2 cut(s) 174, 331
NcoI CCATGG 1 cut(s) 314
NdeII GATC 1 cut(s) 288
NlaIII CATG 1 cut(s) 318
NlaIV GGNNCC 2 cut(s) 84, 159
NmeAIII GCCGAG 1 cut(s) 133
PkrI GCNGC 3 cut(s) 135, 179, 336
PspN4I GGNNCC 2 cut(s) 84, 159
PspPI GGNCC 2 cut(s) 83, 255
RseI CAYNNNNRTG 1 cut(s) 308
SatI GCNGC 3 cut(s) 134, 178, 335
Sau3AI GATC 1 cut(s) 288
Sau96I GGNCC 2 cut(s) 83, 255
SetI ASST 2 cut(s) 114, 210
SfaNI GCATC 1 cut(s) 300
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 6 cut(s) 39, 45, 139, 162, 192, 211
SsiI CCGC 6 cut(s) 122, 136, 177, 323, 332, 335
StyI CCWWGG 1 cut(s) 314
TaqI TCGA 1 cut(s) 291
TasI AATT 6 cut(s) 39, 45, 139, 162, 192, 211
TauI GCSGC 2 cut(s) 180, 337
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 83
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.