FvH4_4g27050

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002115
Physical Location & Seq
Forward (+)
28207643 .. 28209865
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27050.t1

Sequence Viewer

Length: 960 bp
ATGGTGTATACGGGAGCGTCGGAGGAGAGAACGAGAGTGACGGCGGCGGCGATGAATTCCGAGAGAGCGGCGAAGCCTCTGCACAATTTCAGTCTGCCGTGGGATTTGAAGTGGGGGAACCAGAGGCACCTGCGCTGTATGAAGGTGGAGGACTCCGATGCCGACGCGCCGCCGGCGGGGTTTGATCGGCGATCGGTGGTGGGGATGACTCGGCGGCGGGGAGGGGAATCGGAGGGGGTTTTCGAGAGGCGGAGCAGGGCGAGGAGGCCGAGGATCGACGACGGCGTAGAGGCGGAGGAGGAGGAGGAGGGGATCGAGGCGGTTAGGGAGAAGCTCATGTTTGAATTCAAGACGGCGGCGGATAAGATGAAAGACGCGATTTTGAGAGGCGAGGAGGACCTCGACGTCGACGTCGACGACGAGGTGGTGGCGCCGGCGCCGTTTGCTCCGGAAGCTGCTGTGGTTACTGACGTGGCGGCTCCGGTGGAGGAGGACGCCGAGGCTGCGGCGGTGGAGGATGGGGGATCTTCGCCTGCGGCGGCGGCGGCGGTGAGGCCGTGGAATCTGAGGACGAGGAGGGCGGCGTGCAAGGCTCCTATTGGCGGTGGCGGCGGCAGCAAGGGTTTGAGAATTGAGGAGAGGAAGGTGAATTCCTCGCCGTTGAGGAGTGAGGGCAACAATGGCGGCAAGTCGCCGAGGCTGGTCCGGGGGGCTTCCGGGTCGGGTTTGGAGAAGAAGGAGAGGCCCAAGGAGAGGCCCAAGTTCTCACTCACGCTCTCCAAGAAGGAGATCGATGAAGATTTTACGCAGATTCTCGGCCACCGCGCTCCCCGCCGCCCCAAGAAGCGGCCCAGAGCGGTGCAGAAGCAATTGGATGCGTTGTTTCCCGGTATGTGGTTGACGGAGGTCTCAGCTGATTCGTACAAGGTTCCCGAGTTCCCTGAAAATGTCAAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

320

Amino Acids

35.1

Weight (kDa)

7.73

Isoelectric Point (pI)

70.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 259 - 308 1.1e-26 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 138
AasI GACNNNNNNGTC 2 cut(s) 404, 410
AatII GACGTC 2 cut(s) 408, 414
Acc36I ACCTGC 1 cut(s) 138
AccB1I GGYRCC 3 cut(s) 126, 430, 436
AccBSI CCGCTC 2 cut(s) 68, 857
AccI GTMKAC 3 cut(s) 8, 408, 414
AccII CGCG 3 cut(s) 167, 377, 825
AccIII TCCGGA 1 cut(s) 448
AclWI GGATC 3 cut(s) 281, 320, 532
AcoI YGGCCR 1 cut(s) 817
AcsI RAATTY 3 cut(s) 55, 344, 649
AcyI GRCGYC 5 cut(s) 405, 411, 431, 437, 495
AfaI GTAC 1 cut(s) 923
AfiI CCNNNNNNNGG 5 cut(s) 176, 602, 753, 846, 894
AgsI TTSAA 3 cut(s) 109, 344, 349
AjiI CACGTC 1 cut(s) 472
AluBI AGCT 3 cut(s) 334, 455, 914
AluI AGCT 3 cut(s) 334, 455, 914
Alw26I GTCTC 1 cut(s) 913
AlwI GGATC 3 cut(s) 281, 320, 532
Ama87I CYCGRG 1 cut(s) 932
Aor13HI TCCGGA 1 cut(s) 448
AoxI GGCC 6 cut(s) 266, 554, 743, 755, 817, 848
ApeKI GCWGC 3 cut(s) 455, 503, 615
ApoI RAATTY 3 cut(s) 55, 344, 649
AspLEI GCGC 5 cut(s) 135, 169, 433, 439, 827
AspS9I GGNCC 5 cut(s) 397, 703, 744, 756, 849
AsuC2I CCSGG 3 cut(s) 707, 718, 888
AsuHPI GGTGA 2 cut(s) 562, 658
AvaI CYCGRG 1 cut(s) 932
AvaII GGWCC 2 cut(s) 397, 703
BanI GGYRCC 3 cut(s) 126, 430, 436
BbvI GCAGC 3 cut(s) 442, 490, 627
BccI CCATC 1 cut(s) 512
BceAI ACGGC 7 cut(s) 57, 82, 298, 369, 424, 541, 643
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BcnI CCSGG 3 cut(s) 707, 718, 888
BcoDI GTCTC 1 cut(s) 913
BfoI RGCGCY 2 cut(s) 434, 440
BfuAI ACCTGC 1 cut(s) 138
Bme1390I CCNGG 3 cut(s) 707, 718, 888
Bme18I GGWCC 2 cut(s) 397, 703
BmeT110I CYCGRG 1 cut(s) 932
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 5 cut(s) 397, 703, 744, 756, 849
BmiI GGNNCC 7 cut(s) 119, 128, 432, 438, 480, 594, 930
BmrFI CCNGG 3 cut(s) 707, 718, 888
BmsI GCATC 2 cut(s) 148, 865
BoxI GACNNNNGTC 1 cut(s) 905
BpuMI CCSGG 3 cut(s) 707, 718, 888
Bsa29I ATCGAT 1 cut(s) 792
BsaHI GRCGYC 5 cut(s) 405, 411, 431, 437, 495
BsaI GGTCTC 1 cut(s) 913
BsaJI CCNNGG 7 cut(s) 98, 269, 498, 557, 695, 706, 747
BsaWI WCCGGW 2 cut(s) 448, 481
Bsc4I CCNNNNNNNGG 5 cut(s) 176, 602, 753, 846, 894
Bse118I RCCGGY 2 cut(s) 172, 433
BseAI TCCGGA 1 cut(s) 448
BseCI ATCGAT 1 cut(s) 792
BseDI CCNNGG 7 cut(s) 98, 269, 498, 557, 695, 706, 747
BseGI GGATG 3 cut(s) 210, 523, 880
BseLI CCNNNNNNNGG 5 cut(s) 176, 602, 753, 846, 894
BseMII CTCAG 2 cut(s) 557, 924
BseXI GCAGC 3 cut(s) 442, 490, 627
BsgI GTGCAG 2 cut(s) 65, 881
Bsh1236I CGCG 3 cut(s) 167, 377, 825
Bsh1285I CGRYCG 1 cut(s) 194
BshFI GGCC 6 cut(s) 268, 556, 745, 757, 819, 850
BshNI GGYRCC 3 cut(s) 126, 430, 436
BshVI ATCGAT 1 cut(s) 792
BsiEI CGRYCG 1 cut(s) 194
BsiHKCI CYCGRG 1 cut(s) 932
BsiSI CCGG 7 cut(s) 173, 434, 449, 482, 706, 717, 888
BslI CCNNNNNNNGG 5 cut(s) 176, 602, 753, 846, 894
BsmAI GTCTC 1 cut(s) 913
BsnI GGCC 6 cut(s) 268, 556, 745, 757, 819, 850
Bso31I GGTCTC 1 cut(s) 913
BsoBI CYCGRG 1 cut(s) 932
Bsp13I TCCGGA 1 cut(s) 448
Bsp143I GATC 6 cut(s) 184, 191, 273, 312, 524, 789
BspANI GGCC 6 cut(s) 268, 556, 745, 757, 819, 850
BspCNI CTCAG 2 cut(s) 558, 923
BspDI ATCGAT 1 cut(s) 792
BspEI TCCGGA 1 cut(s) 448
BspFNI CGCG 3 cut(s) 167, 377, 825
BspLI GGNNCC 7 cut(s) 119, 128, 432, 438, 480, 594, 930
BspMI ACCTGC 1 cut(s) 138
BspPI GGATC 3 cut(s) 281, 320, 532
BspT107I GGYRCC 3 cut(s) 126, 430, 436
BspTNI GGTCTC 1 cut(s) 913
BsrBI CCGCTC 2 cut(s) 68, 857
BsrFI RCCGGY 2 cut(s) 172, 433
BssAI RCCGGY 2 cut(s) 172, 433
BssECI CCNNGG 7 cut(s) 98, 269, 498, 557, 695, 706, 747
BssMI GATC 6 cut(s) 184, 191, 273, 312, 524, 789
BssNAI GTATAC 1 cut(s) 9
BssNI GRCGYC 5 cut(s) 405, 411, 431, 437, 495
BssT1I CCWWGG 1 cut(s) 747
Bst1107I GTATAC 1 cut(s) 9
BstACI GRCGYC 5 cut(s) 405, 411, 431, 437, 495
BstC8I GCNNGC 4 cut(s) 174, 435, 534, 586
BstDEI CTNAG 2 cut(s) 566, 910
BstDSI CCRYGG 2 cut(s) 98, 557
BstF5I GGATG 3 cut(s) 210, 523, 880
BstFNI CGCG 3 cut(s) 167, 377, 825
BstH2I RGCGCY 2 cut(s) 434, 440
BstHHI GCGC 5 cut(s) 135, 169, 433, 439, 827
BstKTI GATC 6 cut(s) 187, 194, 276, 315, 527, 792
BstMAI GTCTC 1 cut(s) 913
BstMBI GATC 6 cut(s) 184, 191, 273, 312, 524, 789
BstMCI CGRYCG 1 cut(s) 194
BstPAI GACNNNNGTC 1 cut(s) 905
BstSCI CCNGG 3 cut(s) 705, 716, 886
BstUI CGCG 3 cut(s) 167, 377, 825
BstV1I GCAGC 3 cut(s) 442, 490, 627
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BstZ17I GTATAC 1 cut(s) 9
Bsu15I ATCGAT 1 cut(s) 792
BsuRI GGCC 6 cut(s) 268, 556, 745, 757, 819, 850
BsuTUI ATCGAT 1 cut(s) 792
BtgI CCRYGG 2 cut(s) 98, 557
BtgZI GCGATG 1 cut(s) 65
BtrI CACGTC 1 cut(s) 472
BtsCI GGATG 3 cut(s) 210, 523, 880
BveI ACCTGC 1 cut(s) 138
Cac8I GCNNGC 4 cut(s) 174, 435, 534, 586
CfoI GCGC 5 cut(s) 135, 169, 433, 439, 827
Cfr10I RCCGGY 2 cut(s) 172, 433
Cfr13I GGNCC 5 cut(s) 397, 703, 744, 756, 849
ClaI ATCGAT 1 cut(s) 792
CseI GACGC 4 cut(s) 6, 173, 383, 503
Csp6I GTAC 1 cut(s) 922
CviAII CATG 1 cut(s) 337
CviQI GTAC 1 cut(s) 922
DdeI CTNAG 2 cut(s) 566, 910
DinI GGCGCC 2 cut(s) 432, 438
DpnI GATC 6 cut(s) 186, 193, 275, 314, 526, 791
DpnII GATC 6 cut(s) 184, 191, 273, 312, 524, 789
DrdI GACNNNNNNGTC 2 cut(s) 404, 410
DseDI GACNNNNNNGTC 2 cut(s) 404, 410
EaeI YGGCCR 1 cut(s) 817
EciI GGCGGA 3 cut(s) 265, 308, 374
Eco130I CCWWGG 1 cut(s) 747
Eco31I GGTCTC 1 cut(s) 913
Eco47I GGWCC 2 cut(s) 397, 703
Eco88I CYCGRG 1 cut(s) 932
EcoO109I RGGNCCY 1 cut(s) 397
EcoRI GAATTC 3 cut(s) 55, 344, 649
EcoT14I CCWWGG 1 cut(s) 747
EgeI GGCGCC 2 cut(s) 432, 438
EheI GGCGCC 2 cut(s) 432, 438
ErhI CCWWGG 1 cut(s) 747
FaeI CATG 1 cut(s) 340
FaiI YATR 4 cut(s) 9, 140, 338, 893
FatI CATG 1 cut(s) 336
FauI CCCGC 3 cut(s) 169, 210, 839
FblI GTMKAC 3 cut(s) 8, 408, 414
FokI GGATG 3 cut(s) 217, 530, 887
GlaI GCGC 5 cut(s) 134, 168, 432, 438, 826
HaeII RGCGCY 2 cut(s) 434, 440
HaeIII GGCC 6 cut(s) 268, 556, 745, 757, 819, 850
HapII CCGG 7 cut(s) 173, 434, 449, 482, 706, 717, 888
HgaI GACGC 4 cut(s) 6, 173, 383, 503
HhaI GCGC 5 cut(s) 135, 169, 433, 439, 827
Hin1I GRCGYC 5 cut(s) 405, 411, 431, 437, 495
Hin1II CATG 1 cut(s) 340
Hin6I GCGC 5 cut(s) 133, 167, 431, 437, 825
HinP1I GCGC 5 cut(s) 133, 167, 431, 437, 825
HincII GTYRAC 3 cut(s) 409, 415, 900
HindII GTYRAC 3 cut(s) 409, 415, 900
HinfI GANTC 6 cut(s) 152, 208, 227, 562, 811, 917
HpaII CCGG 7 cut(s) 173, 434, 449, 482, 706, 717, 888
HphI GGTGA 2 cut(s) 562, 658
Hpy166II GTNNAC 4 cut(s) 9, 409, 415, 900
Hpy188I TCNGA 5 cut(s) 22, 61, 157, 232, 567
Hpy188III TCNNGA 5 cut(s) 244, 349, 449, 932, 952
Hpy8I GTNNAC 4 cut(s) 9, 409, 415, 900
HpyAV CCTTC 4 cut(s) 136, 637, 730, 778
HpyCH4IV ACGT 3 cut(s) 405, 411, 471
HpyCH4V TGCA 3 cut(s) 82, 588, 862
HpyF3I CTNAG 2 cut(s) 566, 910
HpySE526I ACGT 3 cut(s) 405, 411, 471
Hsp92I GRCGYC 5 cut(s) 405, 411, 431, 437, 495
Hsp92II CATG 1 cut(s) 340
HspAI GCGC 5 cut(s) 133, 167, 431, 437, 825
KasI GGCGCC 2 cut(s) 430, 436
Kpn2I TCCGGA 1 cut(s) 448
KroI GCCGGC 2 cut(s) 172, 433
KroNI GCCGGC 2 cut(s) 174, 435
Kzo9I GATC 6 cut(s) 184, 191, 273, 312, 524, 789
LmnI GCTCC 6 cut(s) 14, 252, 451, 484, 598, 832
Lsp1109I GCAGC 3 cut(s) 442, 490, 627
LweI GCATC 2 cut(s) 148, 865
MaeII ACGT 3 cut(s) 405, 411, 471
MaeIII GTNAC 2 cut(s) 37, 463
MalI GATC 6 cut(s) 186, 193, 275, 314, 526, 791
MbiI CCGCTC 2 cut(s) 68, 857
MboI GATC 6 cut(s) 184, 191, 273, 312, 524, 789
MboII GAAGA 3 cut(s) 519, 745, 809
MfeI CAATTG 1 cut(s) 869
MflI RGATCY 1 cut(s) 524
MluCI AATT 6 cut(s) 55, 85, 344, 630, 649, 869
Mly113I GGCGCC 2 cut(s) 431, 437
MlyI GAGTC 2 cut(s) 146, 202
MreI CGCCGGCG 2 cut(s) 172, 433
MroI TCCGGA 1 cut(s) 448
MroNI GCCGGC 2 cut(s) 172, 433
MspA1I CMGCKG 1 cut(s) 914
MspI CCGG 7 cut(s) 173, 434, 449, 482, 706, 717, 888
MspR9I CCNGG 3 cut(s) 707, 718, 888
MunI CAATTG 1 cut(s) 869
MvnI CGCG 3 cut(s) 167, 377, 825
NaeI GCCGGC 2 cut(s) 174, 435
NarI GGCGCC 2 cut(s) 431, 437
NciI CCSGG 3 cut(s) 707, 718, 888
NdeII GATC 6 cut(s) 184, 191, 273, 312, 524, 789
NgoMIV GCCGGC 2 cut(s) 172, 433
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 7 cut(s) 119, 128, 432, 438, 480, 594, 930
NmeAIII GCCGAG 5 cut(s) 190, 294, 523, 720, 795
NmuCI GTSAC 1 cut(s) 37
PaqCI CACCTGC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 6 cut(s) 47, 282, 408, 411, 414, 417
PdiI GCCGGC 2 cut(s) 174, 435
PfeI GAWTC 4 cut(s) 227, 562, 811, 917
Ple19I CGATCG 1 cut(s) 194
PleI GAGTC 2 cut(s) 146, 202
PluTI GGCGCC 2 cut(s) 434, 440
PpsI GAGTC 2 cut(s) 146, 202
PpuMI RGGWCCY 1 cut(s) 397
PshAI GACNNNNGTC 1 cut(s) 905
Psp5II RGGWCCY 1 cut(s) 397
PspN4I GGNNCC 7 cut(s) 119, 128, 432, 438, 480, 594, 930
PspPI GGNCC 5 cut(s) 397, 703, 744, 756, 849
PspPPI RGGWCCY 1 cut(s) 397
PsuI RGATCY 1 cut(s) 524
PvuI CGATCG 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 914
RsaI GTAC 1 cut(s) 923
RsaNI GTAC 1 cut(s) 922
SalI GTCGAC 2 cut(s) 407, 413
Sau3AI GATC 6 cut(s) 184, 191, 273, 312, 524, 789
Sau96I GGNCC 5 cut(s) 397, 703, 744, 756, 849
SchI GAGTC 2 cut(s) 146, 202
ScrFI CCNGG 3 cut(s) 707, 718, 888
SfaNI GCATC 2 cut(s) 148, 865
SfoI GGCGCC 2 cut(s) 432, 438
SgrAI CRCCGGYG 2 cut(s) 172, 433
SgrDI CGTCGACG 2 cut(s) 407, 413
SinI GGWCC 2 cut(s) 397, 703
Sse9I AATT 6 cut(s) 55, 85, 344, 630, 649, 869
SspDI GGCGCC 2 cut(s) 430, 436
StyD4I CCNGG 3 cut(s) 705, 716, 886
StyI CCWWGG 1 cut(s) 747
TaiI ACGT 3 cut(s) 408, 414, 474
TaqI TCGA 7 cut(s) 243, 276, 315, 402, 408, 414, 792
TasI AATT 6 cut(s) 55, 85, 344, 630, 649, 869
TfiI GAWTC 4 cut(s) 227, 562, 811, 917
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 3 cut(s) 455, 503, 615
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 4 cut(s) 68, 155, 383, 810
TspGWI ACGGA 1 cut(s) 917
VpaK11BI GGWCC 2 cut(s) 397, 703
XapI RAATTY 3 cut(s) 55, 344, 649
XmiI GTMKAC 3 cut(s) 8, 408, 414
ZraI GACGTC 2 cut(s) 406, 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.