Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001302

Physical Location & Seq

Genomic Coordinates Reverse (-)

6225351 .. 6226227

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G14580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAAAGTCACAAGCTACTCTCGAATTCTAATAATCTTGGCAGCACTTGTGGGTGCTCTTGTTGTTCCCTTGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATGCTCACAACCAGGCACGATCGCAGATAGGCGTAGGCCCCATGCAGTGGGACGAAGGACTTGCAGCCTACGCTCGGAACTACGCAAACCAACTAAAAGGAGACTGCAGACTCGTACATTCCCGTGGGCCTTACGGGGAGAACTTGGCAAAGAGTGGCGGTGACTTGTCTGGTGTTGCTGCCGTGAACTTGTGGGTTAACGAGAAGGCTAACTACAACTACGATACAAACACGTGCAACGGAGTTTGCGGTCACTACACTCAGGTCGTTTGGAGAAATTCTGTGAGACTCGGATGTGCTAAAGTGAGATGTAACAATGGTGGAACCATCATCAGTTGCAATTATGATCCTCCGGGGAACTATGCGAACCAGAAGCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0006955 GO:0007584 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009991 GO:0010033 GO:0010035 GO:0010243 GO:0010266 GO:0014070 GO:0030312 GO:0031667 GO:0033273 GO:0042221 GO:0042493 GO:0043207 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0080027 GO:0098542 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

161

Amino Acids

17.54

Weight (kDa)

8.9

Isoelectric Point (pI)

28.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	34 - 149	9.8e-21	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14580 AT2G14610 AT3G19690 AT4G33720 AT4G33730
fragaria_vesca	FvH4_2g02860 FvH4_2g02912
malus_domestica	MD05G1108800.v1.1 MD05G1109100.v1.1 MD05G1109700.v1.1 MD05G1110000.v1.1
prunus_persica	Prupe.8G102800_v2.0.a1 Prupe.8G152900_v2.0.a1 Prupe.8G153100_v2.0.a1 Prupe.8G153200_v2.0.a1 Prupe.8G153500_v2.0.a1 Prupe.8G153700_v2.0.a1 Prupe.8G153800_v2.0.a1
pyrus_communis	pycom05g10520
rosa_chinensis	RchiOBHm_Chr6g0247671 RchiOBHm_Chr6g0247681 RchiOBHm_Chr6g0264301
rosa_laevigata	RLG00000014266 RLG00000014268 RLG00000014270 RLG00000015186 RLG00000015187 RLG00000036357 RLG00000036358 RLG00000036359 RLG00000036360
rosa_multiflora	Rmu_co8203636.1_g000001 Rmu_sc0000147.1_g000017 Rmu_sc0000147.1_g000029 Rmu_sc0003092.1_g000033 Rmu_sc0013122.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431690 Rroxscaffold_7G00213790 Rroxscaffold_7G00213800
rosa_rugosa	Rorug05G0527800 Rorug05G0527900 Rorug06G0011700
rosa_samantha	Rh6AG042300 Rh6AG131500 Rh6BG037200 Rh6BG128300 Rh6CG036300 Rh6CG036500 Rh6CG126700 Rh6DG033300 Rh6DG033500 Rh6DG113800
rosa_wichuraiana	Rw6G003660 Rw6G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	150
AciI	CCGC	2 cut(s)	261, 351
AclWI	GGATC	1 cut(s)	443
AcsI	RAATTY	2 cut(s)	24, 379
AcvI	CACGTG	1 cut(s)	336
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	150, 177
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	2 cut(s)	198, 382
AlwI	GGATC	1 cut(s)	443
AoxI	GGCC	2 cut(s)	139, 230
ApeKI	GCWGC	3 cut(s)	41, 167, 281
ApoI	RAATTY	2 cut(s)	24, 379
AspS9I	GGNCC	2 cut(s)	140, 230
AsuC2I	CCSGG	1 cut(s)	456
AsuHPI	GGTGA	1 cut(s)	275
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BbrPI	CACGTG	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	3 cut(s)	53, 179, 268
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	456
BcoDI	GTCTC	2 cut(s)	198, 382
BfmI	CTRYAG	1 cut(s)	208
BisI	GCNGC	3 cut(s)	42, 168, 282
BlsI	GCNGC	3 cut(s)	43, 169, 283
Bme1390I	CCNGG	2 cut(s)	116, 456
BmgT120I	GGNCC	2 cut(s)	140, 230
BmiI	GGNNCC	2 cut(s)	142, 427
BmrFI	CCNGG	2 cut(s)	116, 456
BpuEI	CTTGAG	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	456
BsaAI	YACGTR	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	226, 455
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 177
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	226, 455
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	2 cut(s)	150, 177
BseMII	CTCAG	1 cut(s)	377
BseXI	GCAGC	3 cut(s)	53, 179, 268
Bsh1285I	CGRYCG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	141, 232
BsiEI	CGRYCG	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	150, 177
BsmAI	GTCTC	2 cut(s)	198, 382
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	141, 232
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	122, 448
BspACI	CCGC	2 cut(s)	261, 351
BspANI	GGCC	2 cut(s)	141, 232
BspCNI	CTCAG	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	142, 427
BspMAI	CTGCAG	1 cut(s)	212
BspPI	GGATC	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	226, 455
BssMI	GATC	2 cut(s)	122, 448
Bst2UI	CCWGG	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	401
BstKTI	GATC	2 cut(s)	125, 451
BstMAI	GTCTC	2 cut(s)	198, 382
BstMBI	GATC	2 cut(s)	122, 448
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	114, 454
BstSFI	CTRYAG	1 cut(s)	208
BstV1I	GCAGC	3 cut(s)	53, 179, 268
BsuRI	GGCC	2 cut(s)	141, 232
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	401
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	140, 230
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	8 cut(s)	15, 77, 87, 141, 170, 232, 311, 478
CviKI_1	RGCY	8 cut(s)	15, 77, 87, 141, 170, 232, 311, 478
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	2 cut(s)	124, 450
DpnII	GATC	2 cut(s)	122, 448
Eco72I	CACGTG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	114
FaeI	CATG	1 cut(s)	148
FaiI	YATR	4 cut(s)	99, 146, 447, 465
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	42, 168, 282
FokI	GGATG	1 cut(s)	408
Fsp4HI	GCNGC	3 cut(s)	42, 168, 282
GluI	GCNGC	3 cut(s)	42, 168, 282
HaeIII	GGCC	2 cut(s)	141, 232
HapII	CCGG	1 cut(s)	455
Hin1II	CATG	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	2 cut(s)	213, 390
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	2 cut(s)	289, 301
Hpy188I	TCNGA	2 cut(s)	180, 395
Hpy188III	TCNNGA	2 cut(s)	21, 80
Hpy8I	GTNNAC	2 cut(s)	289, 301
HpyAV	CCTTC	3 cut(s)	67, 152, 301
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	5 cut(s)	148, 167, 210, 339, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	1 cut(s)	148
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	122, 448
LpnPI	CCDG	6 cut(s)	101, 101, 128, 258, 350, 468
Lsp1109I	GCAGC	3 cut(s)	53, 179, 268
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	4 cut(s)	7, 263, 353, 413
MalI	GATC	2 cut(s)	124, 450
MboI	GATC	2 cut(s)	122, 448
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	3 cut(s)	24, 379, 442
MlyI	GAGTC	2 cut(s)	207, 384
MnlI	CCTC	1 cut(s)	462
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	2 cut(s)	116, 456
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	173
NciI	CCSGG	1 cut(s)	456
NdeII	GATC	2 cut(s)	122, 448
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	2 cut(s)	142, 427
NmuCI	GTSAC	3 cut(s)	7, 263, 353
PflMI	CCANNNNNTGG	1 cut(s)	150
PkrI	GCNGC	3 cut(s)	43, 169, 283
Ple19I	CGATCG	1 cut(s)	125
PleI	GAGTC	2 cut(s)	207, 384
PmaCI	CACGTG	1 cut(s)	336
PmlI	CACGTG	1 cut(s)	336
PpsI	GAGTC	2 cut(s)	207, 384
Ppu21I	YACGTR	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	114
PspCI	CACGTG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	142, 427
PspPI	GGNCC	2 cut(s)	140, 230
PstI	CTGCAG	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	42, 168, 282
Sau3AI	GATC	2 cut(s)	122, 448
Sau96I	GGNCC	2 cut(s)	140, 230
SchI	GAGTC	2 cut(s)	207, 384
ScrFI	CCNGG	2 cut(s)	116, 456
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	3 cut(s)	17, 338, 369
SfcI	CTRYAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	3 cut(s)	24, 379, 442
SsiI	CCGC	2 cut(s)	261, 351
StyD4I	CCNGG	2 cut(s)	114, 454
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	1 cut(s)	22
TasI	AATT	3 cut(s)	24, 379, 442
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	155
TseFI	GTSAC	3 cut(s)	7, 263, 353
TseI	GCWGC	3 cut(s)	41, 167, 281
Tsp45I	GTSAC	3 cut(s)	7, 263, 353
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	155
Van91I	CCANNNNNTGG	1 cut(s)	150
XapI	RAATTY	2 cut(s)	24, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.