Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001302

Physical Location & Seq

Genomic Coordinates Reverse (-)

22338251 .. 22338490

Gene Structure 240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1108800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAGCACTGGTGACATGTCGGGAACAGCGGCTGTGGACATGTGGGTGGCGGAGAAAGCCGACTACAGTTATGAGTCGAACTCTTGTGCTGATGGAAAGGTGTGTGGGCATTATACACAGGTGGTTTGGCGTAACTCGGCTCGTGTAGGGTGCGCAAAAGTTAGGTGCAGTAGTGGGGGTACCTTCATTGGATGCAACTATGATCCCCCAGGCAACTATGTTGGGCAGAAGCCATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

80

Amino Acids

8.46

Weight (kDa)

6.51

Isoelectric Point (pI)

25.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	4 - 67	2.9e-11	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14580 AT2G14610 AT3G19690 AT4G33720 AT4G33730
fragaria_vesca	FvH4_2g02860 FvH4_2g02912
malus_domestica	MD05G1108800.v1.1 MD05G1109100.v1.1 MD05G1109700.v1.1 MD05G1110000.v1.1
prunus_persica	Prupe.8G102800_v2.0.a1 Prupe.8G152900_v2.0.a1 Prupe.8G153100_v2.0.a1 Prupe.8G153200_v2.0.a1 Prupe.8G153500_v2.0.a1 Prupe.8G153700_v2.0.a1 Prupe.8G153800_v2.0.a1
pyrus_communis	pycom05g10520
rosa_chinensis	RchiOBHm_Chr6g0247671 RchiOBHm_Chr6g0247681 RchiOBHm_Chr6g0264301
rosa_laevigata	RLG00000014266 RLG00000014268 RLG00000014270 RLG00000015186 RLG00000015187 RLG00000036357 RLG00000036358 RLG00000036359 RLG00000036360
rosa_multiflora	Rmu_co8203636.1_g000001 Rmu_sc0000147.1_g000017 Rmu_sc0000147.1_g000029 Rmu_sc0003092.1_g000033 Rmu_sc0013122.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431690 Rroxscaffold_7G00213790 Rroxscaffold_7G00213800
rosa_rugosa	Rorug05G0527800 Rorug05G0527900 Rorug06G0011700
rosa_samantha	Rh6AG042300 Rh6AG131500 Rh6BG037200 Rh6BG128300 Rh6CG036300 Rh6CG036500 Rh6CG126700 Rh6DG033300 Rh6DG033500 Rh6DG113800
rosa_wichuraiana	Rw6G003660 Rw6G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	154
Acc65I	GGTACC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	2 cut(s)	29, 50
AclWI	GGATC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	181
AflIII	ACRYGT	2 cut(s)	15, 39
AjnI	CCWGG	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	32
Asp718I	GGTACC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	179
BauI	CACGAG	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	210
BfaI	CTAG	1 cut(s)	238
BfmI	CTRYAG	1 cut(s)	64
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	182
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BsaJI	CCNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	13
BsgI	GTGCAG	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	2 cut(s)	29, 50
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	202
BssSI	CACGAG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	2 cut(s)	19, 43
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	2 cut(s)	16, 40
CviJI	RGCY	4 cut(s)	32, 59, 140, 232
CviKI_1	RGCY	4 cut(s)	32, 59, 140, 232
CviQI	GTAC	1 cut(s)	180
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
EciI	GGCGGA	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	208
FaeI	CATG	2 cut(s)	19, 43
FaiI	YATR	7 cut(s)	17, 41, 72, 114, 201, 219, 235
FatI	CATG	2 cut(s)	15, 39
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	238
FspI	TGCGCA	1 cut(s)	154
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	19, 43
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	74
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	21
Hpy8I	GTNNAC	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	2 cut(s)	168, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	19, 43
HspAI	GCGC	1 cut(s)	153
KpnI	GGTACC	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	3 cut(s)	104, 195, 222
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	238
MaeIII	GTNAC	2 cut(s)	11, 131
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	83
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	2 cut(s)	19, 43
NlaIV	GGNNCC	1 cut(s)	181
NmeAIII	GCCGAG	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	11
NsbI	TGCGCA	1 cut(s)	154
NspI	RCATGY	2 cut(s)	19, 43
PciI	ACATGT	2 cut(s)	15, 39
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PscI	ACATGT	2 cut(s)	15, 39
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	44
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	4 cut(s)	102, 123, 167, 185
SfaNI	GCATC	1 cut(s)	182
SfcI	CTRYAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	44
SsiI	CCGC	2 cut(s)	29, 50
SspMI	CTAG	1 cut(s)	238
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	77
TauI	GCSGC	1 cut(s)	32
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	13
XceI	RCATGY	2 cut(s)	19, 43
XspI	CTAG	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.