Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001302

Physical Location & Seq

Genomic Coordinates Reverse (-)

6241640 .. 6242541

Gene Structure 902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G14610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAATTTTACTGGCTATTCTCGATTTTTAATCGTCTTTGTAGCTCTTGTAGGTGCTCTTGTTCTTCCCTCGAAAGCTCAAGATAGCCCACAAGATTATCTAAGGGTTCACAACCAGGCACGAGGAGCGGTAGGCGTAGGTCCCATGCAGTGGGACGAGAGGGTTGCAGCCTATGCTCGGAGCTACGCAGAACAACTAAGAGGCAACTGCAGACTCATACACTCTGGTGGGCCTTACGGGGAAAACTTAGCCTGGGGTAGCGGTGACTTGTCTGGCGTCTCCGCCGTGAACATGTGGGTTAGCGAGAAGGCTAACTACAACTACGCTGCGAACACGTGCAATGGAGTTTGTGGTCACTACACTCAAGTTGTTTGGAGAAAGTCAGTGAGACTCGGATGTGCCAAAGTGAGGTGTAACAATGGTGGAACCATAATCAGTTGCAACTATGATCCTCGTGGGAATTATGTGAACGAGAAGCCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0006955 GO:0007584 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009991 GO:0010033 GO:0010035 GO:0010243 GO:0010266 GO:0014070 GO:0030312 GO:0031667 GO:0033273 GO:0042221 GO:0042493 GO:0043207 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0080027 GO:0098542 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

161

Amino Acids

17.68

Weight (kDa)

9.08

Isoelectric Point (pI)

25.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	34 - 149	4.7e-21	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14580 AT2G14610 AT3G19690 AT4G33720 AT4G33730
fragaria_vesca	FvH4_2g02860 FvH4_2g02912
malus_domestica	MD05G1108800.v1.1 MD05G1109100.v1.1 MD05G1109700.v1.1 MD05G1110000.v1.1
prunus_persica	Prupe.8G102800_v2.0.a1 Prupe.8G152900_v2.0.a1 Prupe.8G153100_v2.0.a1 Prupe.8G153200_v2.0.a1 Prupe.8G153500_v2.0.a1 Prupe.8G153700_v2.0.a1 Prupe.8G153800_v2.0.a1
pyrus_communis	pycom05g10520
rosa_chinensis	RchiOBHm_Chr6g0247671 RchiOBHm_Chr6g0247681 RchiOBHm_Chr6g0264301
rosa_laevigata	RLG00000014266 RLG00000014268 RLG00000014270 RLG00000015186 RLG00000015187 RLG00000036357 RLG00000036358 RLG00000036359 RLG00000036360
rosa_multiflora	Rmu_co8203636.1_g000001 Rmu_sc0000147.1_g000017 Rmu_sc0000147.1_g000029 Rmu_sc0003092.1_g000033 Rmu_sc0013122.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431690 Rroxscaffold_7G00213790 Rroxscaffold_7G00213800
rosa_rugosa	Rorug05G0527800 Rorug05G0527900 Rorug06G0011700
rosa_samantha	Rh6AG042300 Rh6AG131500 Rh6BG037200 Rh6BG128300 Rh6CG036300 Rh6CG036500 Rh6CG126700 Rh6DG033300 Rh6DG033500 Rh6DG113800
rosa_wichuraiana	Rw6G003660 Rw6G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	150
AccBSI	CCGCTC	1 cut(s)	128
AciI	CCGC	3 cut(s)	128, 261, 282
AclWI	GGATC	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	4
AcvI	CACGTG	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	276
AfiI	CCNNNNNNNGG	3 cut(s)	150, 177, 408
AflIII	ACRYGT	2 cut(s)	291, 333
AjnI	CCWGG	2 cut(s)	114, 251
AleI	CACNNNNGTG	1 cut(s)	225
AluBI	AGCT	3 cut(s)	44, 77, 183
AluI	AGCT	3 cut(s)	44, 77, 183
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	2 cut(s)	283, 382
AlwI	GGATC	1 cut(s)	443
AoxI	GGCC	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	167, 326
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	2 cut(s)	140, 230
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	140
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BauI	CACGAG	2 cut(s)	120, 453
BbrPI	CACGTG	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	179, 313
BceAI	ACGGC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	2 cut(s)	116, 253
BcoDI	GTCTC	2 cut(s)	283, 382
BfmI	CTRYAG	1 cut(s)	208
BisI	GCNGC	2 cut(s)	168, 327
BlsI	GCNGC	2 cut(s)	169, 328
Bme1390I	CCNGG	2 cut(s)	116, 253
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	140, 230
BmiI	GGNNCC	2 cut(s)	142, 427
BmrFI	CCNGG	2 cut(s)	116, 253
BpuEI	CTTGAG	2 cut(s)	63, 348
BsaAI	YACGTR	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 177, 408
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	2 cut(s)	116, 253
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	3 cut(s)	150, 177, 408
BseMI	GCAATG	1 cut(s)	346
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	179, 313
BshFI	GGCC	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	58
BslFI	GGGAC	2 cut(s)	126, 167
BslI	CCNNNNNNNGG	3 cut(s)	150, 177, 408
BsmAI	GTCTC	2 cut(s)	283, 382
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	2 cut(s)	126, 167
BsnI	GGCC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	448
BspACI	CCGC	3 cut(s)	128, 261, 282
BspANI	GGCC	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	142, 427
BspMAI	CTGCAG	1 cut(s)	212
BspPI	GGATC	1 cut(s)	443
BsrBI	CCGCTC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	448
BssNI	GRCGYC	1 cut(s)	276
BssSI	CACGAG	2 cut(s)	120, 453
Bst2BI	CACGAG	2 cut(s)	120, 453
Bst2UI	CCWGG	2 cut(s)	116, 253
BstACI	GRCGYC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	101, 197, 247
BstF5I	GGATG	1 cut(s)	401
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	2 cut(s)	283, 382
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 173
BstNI	CCWGG	2 cut(s)	116, 253
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	2 cut(s)	114, 251
BstSFI	CTRYAG	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	179, 313
BsuRI	GGCC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	401
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	155, 390
Cfr13I	GGNCC	2 cut(s)	140, 230
CseI	GACGC	1 cut(s)	265
CviAII	CATG	2 cut(s)	145, 292
DdeI	CTNAG	3 cut(s)	101, 197, 247
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
EciI	GGCGGA	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	140
Eco72I	CACGTG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	114, 251
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	2 cut(s)	148, 295
FaiI	YATR	8 cut(s)	146, 174, 218, 293, 431, 447, 465, 481
FaqI	GGGAC	2 cut(s)	126, 167
FatI	CATG	2 cut(s)	144, 291
Fnu4HI	GCNGC	2 cut(s)	168, 327
FokI	GGATG	1 cut(s)	408
Fsp4HI	GCNGC	2 cut(s)	168, 327
GluI	GCNGC	2 cut(s)	168, 327
HaeIII	GGCC	1 cut(s)	232
HgaI	GACGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	148, 295
HinfI	GANTC	2 cut(s)	213, 390
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	3 cut(s)	109, 289, 469
Hpy188I	TCNGA	2 cut(s)	180, 395
Hpy188III	TCNNGA	2 cut(s)	21, 80
Hpy8I	GTNNAC	3 cut(s)	109, 289, 469
HpyAV	CCTTC	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	5 cut(s)	148, 167, 210, 339, 441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 173
HpyF3I	CTNAG	3 cut(s)	101, 197, 247
HpySE526I	ACGT	1 cut(s)	335
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	148, 295
Kzo9I	GATC	1 cut(s)	448
LmnI	GCTCC	2 cut(s)	125, 180
LpnPI	CCDG	6 cut(s)	101, 128, 210, 238, 258, 265
Lsp1109I	GCAGC	2 cut(s)	179, 313
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	3 cut(s)	263, 353, 413
MalI	GATC	1 cut(s)	450
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	1 cut(s)	448
MboII	GAAGA	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	2 cut(s)	4, 460
MlyI	GAGTC	2 cut(s)	207, 384
MnlI	CCTC	6 cut(s)	79, 116, 153, 194, 402, 462
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	225
MspR9I	CCNGG	2 cut(s)	116, 253
MvaI	CCWGG	2 cut(s)	116, 253
MwoI	GCNNNNNNNGC	2 cut(s)	125, 173
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	2 cut(s)	148, 295
NlaIV	GGNNCC	2 cut(s)	142, 427
NmuCI	GTSAC	2 cut(s)	263, 353
NspI	RCATGY	1 cut(s)	295
OliI	CACNNNNGTG	1 cut(s)	225
PciI	ACATGT	1 cut(s)	291
PflMI	CCANNNNNTGG	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	169, 328
PleI	GAGTC	2 cut(s)	207, 384
PmaCI	CACGTG	1 cut(s)	336
PmlI	CACGTG	1 cut(s)	336
PpsI	GAGTC	2 cut(s)	207, 384
Ppu21I	YACGTR	1 cut(s)	336
PpuMI	RGGWCCY	1 cut(s)	140
PscI	ACATGT	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	114, 251
PspCI	CACGTG	1 cut(s)	336
PspGI	CCWGG	2 cut(s)	114, 251
PspN4I	GGNNCC	2 cut(s)	142, 427
PspPI	GGNCC	2 cut(s)	140, 230
PspPPI	RGGWCCY	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	2 cut(s)	168, 327
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	2 cut(s)	140, 230
SchI	GAGTC	2 cut(s)	207, 384
ScrFI	CCNGG	2 cut(s)	116, 253
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	7 cut(s)	46, 55, 79, 142, 185, 338, 413
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	78, 363
SmoI	CTYRAG	2 cut(s)	78, 363
Sse9I	AATT	2 cut(s)	4, 460
SsiI	CCGC	3 cut(s)	128, 261, 282
StyD4I	CCNGG	2 cut(s)	114, 251
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	2 cut(s)	22, 71
TasI	AATT	2 cut(s)	4, 460
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	2 cut(s)	155, 390
TseFI	GTSAC	2 cut(s)	263, 353
TseI	GCWGC	2 cut(s)	167, 326
Tsp45I	GTSAC	2 cut(s)	263, 353
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	155, 390
Van91I	CCANNNNNTGG	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	140
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.