FvH4_2g02912

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001302
Physical Location & Seq
Forward (+)
2278657 .. 2279440
784 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02912.t1

Sequence Viewer

Length: 489 bp
ATGGAATTGTCTAAGATTTCAATATTATCCCTCATTTCCCTCGTAGCCTTAGCCTTACTCCATTCCACTCATGCACAAAACTCACCCCAGGACTACCTCAATGCCCACAACAGTGCTCGAGCCGCAGTGGGCGTCGGAGGCTTAACATGGGATCCCAATCTAGCAGCCTATGCACAAAGATATGCTAATTCACATTATGGCGACTGCAACCTCGTGCATTCTAATGGCCCTTATGGTGAAAACCTTGCAAAGAGCTCCGGCGACTTATCAGGCACATCTGCTGTGAACCTGTGGGTGGGAGAGAAGGCCTACTATAATTACAACTCTAACACTTGTGCTTCTGGCAGGGTTTGTGGGCATTACACCCAGGTGGTTTGGCGCAAGTCGGTACGTGTTGGTTGTGCCAGAGTGAAGTGCATGAATGGAGGTACCTTCATCGGGTGCAACTATGATCCCCGGGGAAACTATGTTGGTCAAAAGCCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

163

Amino Acids

17.48

Weight (kDa)

8.91

Isoelectric Point (pI)

20.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 33 - 150 1e-18 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 428
AciI CCGC 1 cut(s) 123
AclWI GGATC 3 cut(s) 146, 159, 446
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 2 cut(s) 390, 430
AfiI CCNNNNNNNGG 2 cut(s) 295, 438
AflIII ACRYGT 1 cut(s) 391
AgsI TTSAA 1 cut(s) 21
AjnI CCWGG 2 cut(s) 87, 366
AleI CACNNNNGTG 2 cut(s) 111, 368
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw21I GWGCWC 2 cut(s) 118, 257
AlwI GGATC 3 cut(s) 146, 159, 446
Ama87I CYCGRG 2 cut(s) 117, 456
AoxI GGCC 2 cut(s) 226, 306
ApeKI GCWGC 1 cut(s) 164
Asp718I GGTACC 1 cut(s) 428
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 227
AsuC2I CCSGG 2 cut(s) 457, 458
AsuHPI GGTGA 2 cut(s) 75, 248
AvaI CYCGRG 2 cut(s) 117, 456
BamHI GGATCC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 257
BauI CACGAG 1 cut(s) 212
Bbv12I GWGCWC 2 cut(s) 118, 257
BbvI GCAGC 1 cut(s) 176
BciT130I CCWGG 2 cut(s) 89, 368
BcnI CCSGG 2 cut(s) 457, 458
BfaI CTAG 2 cut(s) 161, 487
BisI GCNGC 2 cut(s) 123, 165
BlsI GCNGC 2 cut(s) 124, 166
Bme1390I CCNGG 4 cut(s) 89, 368, 457, 458
BmeT110I CYCGRG 2 cut(s) 117, 456
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 2 cut(s) 153, 430
BmrFI CCNGG 4 cut(s) 89, 368, 457, 458
Bpu10I CCTNAGC 1 cut(s) 49
BpuMI CCSGG 2 cut(s) 457, 458
BsaAI YACGTR 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 5 cut(s) 87, 366, 455, 456, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 438
Bse8I GATNNNNATC 1 cut(s) 156
BseBI CCWGG 2 cut(s) 89, 368
BseDI CCNNGG 5 cut(s) 87, 366, 455, 456, 457
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 2 cut(s) 295, 438
BseXI GCAGC 1 cut(s) 176
BshFI GGCC 2 cut(s) 228, 308
BshNI GGYRCC 1 cut(s) 428
BsiHKAI GWGCWC 2 cut(s) 118, 257
BsiHKCI CYCGRG 2 cut(s) 117, 456
BsiSI CCGG 2 cut(s) 258, 457
BslI CCNNNNNNNGG 2 cut(s) 295, 438
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 2 cut(s) 228, 308
BsoBI CYCGRG 2 cut(s) 117, 456
Bsp1286I GDGCHC 2 cut(s) 118, 257
Bsp143I GATC 2 cut(s) 151, 451
BspACI CCGC 1 cut(s) 123
BspANI GGCC 2 cut(s) 228, 308
BspLI GGNNCC 2 cut(s) 153, 430
BspPI GGATC 3 cut(s) 146, 159, 446
BspT107I GGYRCC 1 cut(s) 428
BssECI CCNNGG 5 cut(s) 87, 366, 455, 456, 457
BssMI GATC 2 cut(s) 151, 451
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 212
Bst2BI CACGAG 1 cut(s) 212
Bst2UI CCWGG 2 cut(s) 89, 368
Bst4CI ACNGT 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 170
BstBAI YACGTR 1 cut(s) 392
BstDEI CTNAG 2 cut(s) 12, 49
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 2 cut(s) 154, 454
BstMBI GATC 2 cut(s) 151, 451
BstMWI GCNNNNNNNGC 3 cut(s) 122, 138, 170
BstNI CCWGG 2 cut(s) 89, 368
BstSCI CCNGG 4 cut(s) 87, 366, 455, 456
BstV1I GCAGC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 2 cut(s) 228, 308
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 118, 132
CfoI GCGC 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 227
Cfr9I CCCGGG 1 cut(s) 456
CseI GACGC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 389, 429
CviAII CATG 3 cut(s) 71, 147, 418
CviJI RGCY 9 cut(s) 47, 53, 122, 141, 167, 228, 255, 308, 481
CviKI_1 RGCY 9 cut(s) 47, 53, 122, 141, 167, 228, 255, 308, 481
CviQI GTAC 2 cut(s) 389, 429
DdeI CTNAG 2 cut(s) 12, 49
DpnI GATC 2 cut(s) 153, 453
DpnII GATC 2 cut(s) 151, 451
Ecl136II GAGCTC 1 cut(s) 255
Eco147I AGGCCT 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 255
Eco88I CYCGRG 2 cut(s) 117, 456
EcoICRI GAGCTC 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 87, 366
EcoT38I GRGCYC 1 cut(s) 257
FaeI CATG 3 cut(s) 74, 150, 421
FatI CATG 3 cut(s) 70, 146, 417
Fnu4HI GCNGC 2 cut(s) 123, 165
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 2 cut(s) 123, 165
FspBI CTAG 2 cut(s) 161, 487
GlaI GCGC 1 cut(s) 380
GluI GCNGC 2 cut(s) 123, 165
HaeIII GGCC 2 cut(s) 228, 308
HapII CCGG 2 cut(s) 258, 457
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 381
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 3 cut(s) 74, 150, 421
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HpaII CCGG 2 cut(s) 258, 457
HphI GGTGA 2 cut(s) 75, 248
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 298, 442
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 7 cut(s) 74, 173, 207, 217, 248, 417, 444
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 138, 170
HpyF3I CTNAG 2 cut(s) 12, 49
HpySE526I ACGT 1 cut(s) 391
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 3 cut(s) 74, 150, 421
HspAI GCGC 1 cut(s) 379
KpnI GGTACC 1 cut(s) 432
Kzo9I GATC 2 cut(s) 151, 451
LmnI GCTCC 1 cut(s) 260
Lsp1109I GCAGC 1 cut(s) 176
MaeI CTAG 2 cut(s) 161, 487
MaeII ACGT 1 cut(s) 391
MalI GATC 2 cut(s) 153, 453
MboI GATC 2 cut(s) 151, 451
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 2 cut(s) 118, 257
MluCI AATT 3 cut(s) 5, 187, 316
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 6 cut(s) 41, 50, 107, 131, 221, 419
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 3 cut(s) 111, 222, 368
MspI CCGG 2 cut(s) 258, 457
MspR9I CCNGG 4 cut(s) 89, 368, 457, 458
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 2 cut(s) 89, 368
MwoI GCNNNNNNNGC 3 cut(s) 122, 138, 170
NciI CCSGG 2 cut(s) 457, 458
NdeII GATC 2 cut(s) 151, 451
NlaIII CATG 3 cut(s) 74, 150, 421
NlaIV GGNNCC 2 cut(s) 153, 430
OliI CACNNNNGTG 2 cut(s) 111, 368
PaeR7I CTCGAG 1 cut(s) 117
PceI AGGCCT 1 cut(s) 308
PctI GAATGC 1 cut(s) 217
PkrI GCNGC 2 cut(s) 124, 166
Ppu21I YACGTR 1 cut(s) 392
Psp124BI GAGCTC 1 cut(s) 257
Psp6I CCWGG 2 cut(s) 87, 366
PspGI CCWGG 2 cut(s) 87, 366
PspN4I GGNNCC 2 cut(s) 153, 430
PspPI GGNCC 1 cut(s) 227
PspXI VCTCGAGB 1 cut(s) 117
PsuI RGATCY 1 cut(s) 151
RsaI GTAC 2 cut(s) 390, 430
RsaNI GTAC 2 cut(s) 389, 429
RseI CAYNNNNRTG 3 cut(s) 111, 222, 368
SacI GAGCTC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 2 cut(s) 123, 165
Sau3AI GATC 2 cut(s) 151, 451
Sau96I GGNCC 1 cut(s) 227
ScrFI CCNGG 4 cut(s) 89, 368, 457, 458
SduI GDGCHC 2 cut(s) 118, 257
SetI ASST 9 cut(s) 99, 213, 246, 257, 291, 372, 394, 430, 434
Sfr274I CTCGAG 1 cut(s) 117
SlaI CTCGAG 1 cut(s) 117
SmaI CCCGGG 1 cut(s) 458
SmiMI CAYNNNNRTG 3 cut(s) 111, 222, 368
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 3 cut(s) 5, 187, 316
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 1 cut(s) 123
SspI AATATT 1 cut(s) 24
SspMI CTAG 2 cut(s) 161, 487
SstI GAGCTC 1 cut(s) 257
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 4 cut(s) 87, 366, 455, 456
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 1 cut(s) 394
TaqI TCGA 1 cut(s) 118
TasI AATT 3 cut(s) 5, 187, 316
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 2 cut(s) 118, 132
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 424, 434
TspMI CCCGGG 1 cut(s) 456
TspRI CASTG 2 cut(s) 118, 132
XhoI CTCGAG 1 cut(s) 117
XmaI CCCGGG 1 cut(s) 456
XspI CTAG 2 cut(s) 161, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.