Rh6BG037200

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001302
Physical Location & Seq
Forward (+)
6205101 .. 6206113
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG037200.1

Sequence Viewer

Length: 486 bp
ATGGAATTGTCTAAGACTTCATTCGCTCTCATTTCCTTCACAGCCATTGCCCTACTCCATTCCATTCATGCCCAAGACTCACCGCAAGACTATCTTGATGCCCACAACGCGGCTAGAGCTGCGGTGGGTGTTGGGCCCTTGACATGGGATGACCAAGTAGCGCGTTTTGCAGAAGACTATGCCAATACCCATGTAGGTGACTGCCAACTCGTCCATTCCGATGGGAAATACGGTGAAAACCTTGCGATGAGCACCGGCGACTTGTCGGGCACCGATGCCGTCAACATGTGGGTGGGAGAGAAGGCCGACTATGATTACAACTCGAATACTTGCGCCGCTGGCAAGGTTTGTGGACATTATACGCAGGTCGTTTGGCGCAGCTCGCTACATGTTGGGTGTGCTAAAGTGAGGTGCAACAGTGGAGGTACCTTTATTGGGTGCAACTATGATCCCCCGGGCAACTATGTTGGGGAAAAACCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

161

Amino Acids

17.31

Weight (kDa)

5.13

Isoelectric Point (pI)

21.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 32 - 149 8.9e-20 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 355
Acc65I GGTACC 1 cut(s) 425
AccB1I GGYRCC 2 cut(s) 269, 425
AccII CGCG 2 cut(s) 110, 163
AciI CCGC 4 cut(s) 83, 110, 122, 336
AclWI GGATC 1 cut(s) 443
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 3 cut(s) 109, 144, 435
AflIII ACRYGT 2 cut(s) 285, 388
AluBI AGCT 2 cut(s) 119, 381
AluI AGCT 2 cut(s) 119, 381
Alw21I GWGCWC 1 cut(s) 254
AlwI GGATC 1 cut(s) 443
Ama87I CYCGRG 1 cut(s) 454
AoxI GGCC 2 cut(s) 134, 303
ApaI GGGCCC 1 cut(s) 138
ApeKI GCWGC 2 cut(s) 119, 378
Asp718I GGTACC 1 cut(s) 425
AspLEI GCGC 3 cut(s) 163, 335, 378
AspS9I GGNCC 2 cut(s) 134, 135
AsuC2I CCSGG 2 cut(s) 455, 456
AsuHPI GGTGA 3 cut(s) 72, 209, 245
AvaI CYCGRG 1 cut(s) 454
BaeGI GKGCMC 2 cut(s) 138, 272
BanI GGYRCC 2 cut(s) 269, 425
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 2 cut(s) 106, 390
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 263
BcnI CCSGG 2 cut(s) 455, 456
BfaI CTAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 4 cut(s) 111, 120, 336, 379
BlsI GCNGC 4 cut(s) 112, 121, 337, 380
Bme1390I CCNGG 2 cut(s) 455, 456
BmeT110I CYCGRG 1 cut(s) 454
BmgT120I GGNCC 2 cut(s) 134, 135
BmiI GGNNCC 3 cut(s) 136, 271, 427
BmrFI CCNGG 2 cut(s) 455, 456
BmsI GCATC 2 cut(s) 88, 265
BpiI GAAGAC 1 cut(s) 180
BpuMI CCSGG 2 cut(s) 455, 456
BsaJI CCNNGG 2 cut(s) 453, 454
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 144, 435
Bse118I RCCGGY 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 453, 454
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 3 cut(s) 109, 144, 435
BseMI GCAATG 1 cut(s) 45
BseSI GKGCMC 2 cut(s) 138, 272
BseXI GCAGC 2 cut(s) 106, 390
Bsh1236I CGCG 2 cut(s) 110, 163
BshFI GGCC 2 cut(s) 136, 305
BshNI GGYRCC 2 cut(s) 269, 425
BsiHKAI GWGCWC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 454
BsiSI CCGG 2 cut(s) 255, 455
BslI CCNNNNNNNGG 3 cut(s) 109, 144, 435
BsnI GGCC 2 cut(s) 136, 305
BsoBI CYCGRG 1 cut(s) 454
Bsp120I GGGCCC 1 cut(s) 134
Bsp1286I GDGCHC 3 cut(s) 138, 254, 272
Bsp143I GATC 1 cut(s) 448
BspACI CCGC 4 cut(s) 83, 110, 122, 336
BspANI GGCC 2 cut(s) 136, 305
BspFNI CGCG 2 cut(s) 110, 163
BspLI GGNNCC 3 cut(s) 136, 271, 427
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 1 cut(s) 443
BspT107I GGYRCC 2 cut(s) 269, 425
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 453, 454
BssMI GATC 1 cut(s) 448
Bst4CI ACNGT 2 cut(s) 233, 419
BstC8I GCNNGC 2 cut(s) 340, 383
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 2 cut(s) 110, 163
BstHHI GCGC 3 cut(s) 163, 335, 378
BstKTI GATC 1 cut(s) 451
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 6 cut(s) 107, 116, 119, 167, 339, 382
BstNSI RCATGY 2 cut(s) 289, 392
BstSCI CCNGG 2 cut(s) 453, 454
BstSLI GKGCMC 2 cut(s) 138, 272
BstUI CGCG 2 cut(s) 110, 163
BstV1I GCAGC 2 cut(s) 106, 390
BstV2I GAAGAC 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 221
BsuRI GGCC 2 cut(s) 136, 305
BtgZI GCGATG 1 cut(s) 260
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 424
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 2 cut(s) 340, 383
CfoI GCGC 3 cut(s) 163, 335, 378
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 134, 135
Cfr9I CCCGGG 1 cut(s) 454
Csp6I GTAC 1 cut(s) 426
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 5 cut(s) 68, 144, 191, 286, 389
CviJI RGCY 6 cut(s) 44, 113, 119, 136, 305, 381
CviKI_1 RGCY 6 cut(s) 44, 113, 119, 136, 305, 381
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
Eco24I GRGCYC 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 454
EcoO109I RGGNCCY 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 138
FaeI CATG 5 cut(s) 71, 147, 194, 289, 392
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 5 cut(s) 67, 143, 190, 285, 388
Fnu4HI GCNGC 4 cut(s) 111, 120, 336, 379
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 4 cut(s) 111, 120, 336, 379
FspBI CTAG 1 cut(s) 114
GlaI GCGC 3 cut(s) 162, 334, 377
GluI GCNGC 4 cut(s) 111, 120, 336, 379
HaeIII GGCC 2 cut(s) 136, 305
HapII CCGG 2 cut(s) 255, 455
HhaI GCGC 3 cut(s) 163, 335, 378
Hin1II CATG 5 cut(s) 71, 147, 194, 289, 392
Hin6I GCGC 3 cut(s) 161, 333, 376
HinP1I GCGC 3 cut(s) 161, 333, 376
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 1 cut(s) 77
HpaII CCGG 2 cut(s) 255, 455
HphI GGTGA 3 cut(s) 72, 209, 245
Hpy166II GTNNAC 2 cut(s) 283, 353
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 283, 353
HpyAV CCTTC 2 cut(s) 46, 295
HpyCH4III ACNGT 2 cut(s) 233, 419
HpyCH4V TGCA 3 cut(s) 170, 414, 441
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 116, 119, 167, 339, 382
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 5 cut(s) 71, 147, 194, 289, 392
HspAI GCGC 3 cut(s) 161, 333, 376
KpnI GGTACC 1 cut(s) 429
Kzo9I GATC 1 cut(s) 448
LpnPI CCDG 4 cut(s) 268, 324, 350, 468
Lsp1109I GCAGC 2 cut(s) 106, 390
LweI GCATC 2 cut(s) 88, 265
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 1 cut(s) 185
MhlI GDGCHC 3 cut(s) 138, 254, 272
MluCI AATT 1 cut(s) 5
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 2 cut(s) 402, 416
MslI CAYNNNNRTG 3 cut(s) 195, 219, 290
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 2 cut(s) 255, 455
MspR9I CCNGG 2 cut(s) 455, 456
MvnI CGCG 2 cut(s) 110, 163
MwoI GCNNNNNNNGC 6 cut(s) 107, 116, 119, 167, 339, 382
NciI CCSGG 2 cut(s) 455, 456
NdeII GATC 1 cut(s) 448
NlaIII CATG 5 cut(s) 71, 147, 194, 289, 392
NlaIV GGNNCC 3 cut(s) 136, 271, 427
NmuCI GTSAC 1 cut(s) 197
NspI RCATGY 2 cut(s) 289, 392
PciI ACATGT 2 cut(s) 285, 388
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PkrI GCNGC 4 cut(s) 112, 121, 337, 380
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PscI ACATGT 2 cut(s) 285, 388
PspN4I GGNNCC 3 cut(s) 136, 271, 427
PspOMI GGGCCC 1 cut(s) 134
PspPI GGNCC 2 cut(s) 134, 135
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
RseI CAYNNNNRTG 3 cut(s) 195, 219, 290
SatI GCNGC 4 cut(s) 111, 120, 336, 379
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 2 cut(s) 134, 135
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 455, 456
SduI GDGCHC 3 cut(s) 138, 254, 272
SfaNI GCATC 2 cut(s) 88, 265
SgrAI CRCCGGYG 1 cut(s) 254
SmaI CCCGGG 1 cut(s) 456
SmiMI CAYNNNNRTG 3 cut(s) 195, 219, 290
Sse9I AATT 1 cut(s) 5
SsiI CCGC 4 cut(s) 83, 110, 122, 336
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 453, 454
TaaI ACNGT 2 cut(s) 233, 419
TaqI TCGA 1 cut(s) 323
TasI AATT 1 cut(s) 5
TauI GCSGC 2 cut(s) 113, 338
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 2 cut(s) 119, 378
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 9, 56
TspMI CCCGGG 1 cut(s) 454
TspRI CASTG 1 cut(s) 424
XceI RCATGY 2 cut(s) 289, 392
XmaI CCCGGG 1 cut(s) 454
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.