Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001302

Physical Location & Seq

Genomic Coordinates Reverse (-)

16561929 .. 16562416

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G152900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGGTTGTGTAAGATGTCATTTGCCTTGATTTGTCTCGTAGGTTTTGCCCTCCTCCAACCCACTCTTGCCCAAGACTCACCACAAGACTACCTCAACGCCCACAACGCCGCTCGAGCGGCAGTAGGTGTTCGAGCCTTAACGTGGGATCCAAACCTAGCAGCTTATGCACAAAGATATGCCAATTCCCGTAAAGCGAAAAGCAGCGGTGACATGTCCGGCACAGCTGCGGTGAACTTGTTTGTGTCAGAGAAGGCCAACTATAACTACAACTCAAACACCTGTGCTCCTAACAAGGTGTGTGGCCATTATACTCAGGTTGTTTGGCGCAACTCAGCTCGTGTAGGATGTGCCAAAGTTAGGTGCAACAATGGAGGTACCTTCATTGGGTGCAATTATGATCCCCCGGGCAACTATGTTGGCCAGAAGCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

146

Amino Acids

15.64

Weight (kDa)

9.26

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14580 AT2G14610 AT3G19690 AT4G33720 AT4G33730
fragaria_vesca	FvH4_2g02860 FvH4_2g02912
malus_domestica	MD05G1108800.v1.1 MD05G1109100.v1.1 MD05G1109700.v1.1 MD05G1110000.v1.1
prunus_persica	Prupe.8G102800_v2.0.a1 Prupe.8G152900_v2.0.a1 Prupe.8G153100_v2.0.a1 Prupe.8G153200_v2.0.a1 Prupe.8G153500_v2.0.a1 Prupe.8G153700_v2.0.a1 Prupe.8G153800_v2.0.a1
pyrus_communis	pycom05g10520
rosa_chinensis	RchiOBHm_Chr6g0247671 RchiOBHm_Chr6g0247681 RchiOBHm_Chr6g0264301
rosa_laevigata	RLG00000014266 RLG00000014268 RLG00000014270 RLG00000015186 RLG00000015187 RLG00000036357 RLG00000036358 RLG00000036359 RLG00000036360
rosa_multiflora	Rmu_co8203636.1_g000001 Rmu_sc0000147.1_g000017 Rmu_sc0000147.1_g000029 Rmu_sc0003092.1_g000033 Rmu_sc0013122.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431690 Rroxscaffold_7G00213790 Rroxscaffold_7G00213800
rosa_rugosa	Rorug05G0527800 Rorug05G0527900 Rorug06G0011700
rosa_samantha	Rh6AG042300 Rh6AG131500 Rh6BG037200 Rh6BG128300 Rh6CG036300 Rh6CG036500 Rh6CG126700 Rh6DG033300 Rh6DG033500 Rh6DG113800
rosa_wichuraiana	Rw6G003660 Rw6G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	377
AccBSI	CCGCTC	2 cut(s)	113, 119
AciI	CCGC	4 cut(s)	111, 119, 207, 230
AclWI	GGATC	3 cut(s)	143, 156, 395
AcoI	YGGCCR	2 cut(s)	304, 421
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	3 cut(s)	144, 360, 387
AflIII	ACRYGT	1 cut(s)	213
AluBI	AGCT	3 cut(s)	164, 227, 338
AluI	AGCT	3 cut(s)	164, 227, 338
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	3 cut(s)	143, 156, 395
Ama87I	CYCGRG	2 cut(s)	114, 406
AoxI	GGCC	3 cut(s)	255, 304, 421
ApeKI	GCWGC	3 cut(s)	161, 204, 227
Asp718I	GGTACC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	330
AsuC2I	CCSGG	2 cut(s)	407, 408
AsuHPI	GGTGA	3 cut(s)	72, 221, 244
AvaI	CYCGRG	2 cut(s)	114, 406
BalI	TGGCCA	2 cut(s)	306, 423
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	377
BauI	CACGAG	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	3 cut(s)	173, 214, 216
BcnI	CCSGG	2 cut(s)	407, 408
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	158
BisI	GCNGC	5 cut(s)	111, 120, 162, 205, 228
BlsI	GCNGC	5 cut(s)	112, 121, 163, 206, 229
Bme1390I	CCNGG	2 cut(s)	407, 408
BmeT110I	CYCGRG	2 cut(s)	114, 406
BmiI	GGNNCC	2 cut(s)	150, 379
BmrFI	CCNGG	2 cut(s)	407, 408
BpuMI	CCSGG	2 cut(s)	407, 408
BsaJI	CCNNGG	2 cut(s)	405, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 360, 387
BseDI	CCNNGG	2 cut(s)	405, 406
BseGI	GGATG	1 cut(s)	353
BseLI	CCNNNNNNNGG	3 cut(s)	144, 360, 387
BseMII	CTCAG	2 cut(s)	329, 348
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	3 cut(s)	173, 214, 216
BshFI	GGCC	3 cut(s)	257, 306, 423
BshNI	GGYRCC	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	289
BsiHKCI	CYCGRG	2 cut(s)	114, 406
BsiSI	CCGG	2 cut(s)	219, 407
BslI	CCNNNNNNNGG	3 cut(s)	144, 360, 387
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	3 cut(s)	257, 306, 423
BsoBI	CYCGRG	2 cut(s)	114, 406
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	148, 400
BspACI	CCGC	4 cut(s)	111, 119, 207, 230
BspANI	GGCC	3 cut(s)	257, 306, 423
BspCNI	CTCAG	2 cut(s)	328, 347
BspLI	GGNNCC	2 cut(s)	150, 379
BspPI	GGATC	3 cut(s)	143, 156, 395
BspT107I	GGYRCC	1 cut(s)	377
BsrBI	CCGCTC	2 cut(s)	113, 119
BssECI	CCNNGG	2 cut(s)	405, 406
BssMI	GATC	2 cut(s)	148, 400
BssSI	CACGAG	1 cut(s)	339
Bst2BI	CACGAG	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstDEI	CTNAG	2 cut(s)	315, 334
BstF5I	GGATG	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	2 cut(s)	151, 403
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	148, 400
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 116, 119, 167
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	405, 406
BstV1I	GCAGC	3 cut(s)	173, 214, 216
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	3 cut(s)	257, 306, 423
BtsCI	GGATG	1 cut(s)	353
CfoI	GCGC	1 cut(s)	330
Cfr9I	CCCGGG	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	378
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	8 cut(s)	137, 164, 227, 257, 306, 338, 423, 430
CviKI_1	RGCY	8 cut(s)	137, 164, 227, 257, 306, 338, 423, 430
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	2 cut(s)	315, 334
DpnI	GATC	2 cut(s)	150, 402
DpnII	GATC	2 cut(s)	148, 400
EaeI	YGGCCR	2 cut(s)	304, 421
Eco88I	CYCGRG	2 cut(s)	114, 406
FaeI	CATG	1 cut(s)	217
FaiI	YATR	7 cut(s)	168, 180, 215, 264, 312, 399, 417
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	5 cut(s)	111, 120, 162, 205, 228
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	5 cut(s)	111, 120, 162, 205, 228
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	5 cut(s)	111, 120, 162, 205, 228
HaeIII	GGCC	3 cut(s)	257, 306, 423
HapII	CCGG	2 cut(s)	219, 407
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	2 cut(s)	219, 407
HphI	GGTGA	3 cut(s)	72, 221, 244
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	250
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	2 cut(s)	247, 391
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	170, 366, 393
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 116, 119, 167
HpyF3I	CTNAG	2 cut(s)	315, 334
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	1 cut(s)	328
KpnI	GGTACC	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	148, 400
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	4 cut(s)	232, 295, 302, 420
Lsp1109I	GCAGC	3 cut(s)	173, 214, 216
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	2 cut(s)	150, 402
MbiI	CCGCTC	2 cut(s)	113, 119
MboI	GATC	2 cut(s)	148, 400
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	289
MlsI	TGGCCA	2 cut(s)	306, 423
MluCI	AATT	2 cut(s)	184, 394
MluNI	TGGCCA	2 cut(s)	306, 423
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	4 cut(s)	62, 65, 104, 368
Mox20I	TGGCCA	2 cut(s)	306, 423
MscI	TGGCCA	2 cut(s)	306, 423
MseI	TTAA	1 cut(s)	140
Msp20I	TGGCCA	2 cut(s)	306, 423
MspA1I	CMGCKG	2 cut(s)	207, 227
MspI	CCGG	2 cut(s)	219, 407
MspR9I	CCNGG	2 cut(s)	407, 408
MwoI	GCNNNNNNNGC	4 cut(s)	107, 116, 119, 167
NciI	CCSGG	2 cut(s)	407, 408
NdeII	GATC	2 cut(s)	148, 400
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	2 cut(s)	150, 379
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	217
PaeR7I	CTCGAG	1 cut(s)	114
PciI	ACATGT	1 cut(s)	213
PkrI	GCNGC	5 cut(s)	112, 121, 163, 206, 229
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PscI	ACATGT	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	150, 379
PspXI	VCTCGAGB	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	5 cut(s)	111, 120, 162, 205, 228
Sau3AI	GATC	2 cut(s)	148, 400
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	407, 408
SduI	GDGCHC	1 cut(s)	289
Sfr274I	CTCGAG	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	114
SmaI	CCCGGG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	2 cut(s)	184, 394
SsiI	CCGC	4 cut(s)	111, 119, 207, 230
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	405, 406
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	2 cut(s)	115, 133
TasI	AATT	2 cut(s)	184, 394
TauI	GCSGC	2 cut(s)	113, 122
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	3 cut(s)	161, 204, 227
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	373
TspMI	CCCGGG	1 cut(s)	406
XceI	RCATGY	1 cut(s)	217
XhoI	CTCGAG	1 cut(s)	114
XmaI	CCCGGG	1 cut(s)	406
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.