Prupe.8G102800_v2.0.a1

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001302
Physical Location & Seq
Forward (+)
13414154 .. 13414642
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G102800.1

Sequence Viewer

Length: 453 bp
ATGGCGTTGTGCAGGATTATTTCACTATCCCTCGTTTGCATTTTAAGCTCAGCCCTTCTCCAATCCACTCATGCCCAAGACACACCGCAAGACTACCTCCTTGCCCACAACAACGCTCGGGCGGCAGTTAATGTCGGGCCGTTGTCATGGGATGATGATTTAGCAGCCTATGCACAAGACTATGCCAATCAACACATTGGCGAAAACTTTGCTGGGAGCACCGGTGACTTGTCGGGCACGTCTGCCGTGAACCTGTGGATGGCGGAGGAGGCCGACTACGACTACGACTCTAACTCATGTGCCGACGGCAATGTGTGTGGGCATTATACGCAGGTCGTTTGGAGCAACTCAGCTCGTCTGGGGTGTGCAAAGGTGACGTGCAACAGTGGAGGTACCTTCATCGGGTGCAACTATGATCCACCAGGCAACGTTGTTGGGCAGAAGCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

151

Amino Acids

15.93

Weight (kDa)

4.32

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 322
Acc65I GGTACC 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 392
AciI CCGC 3 cut(s) 86, 122, 263
AclI AACGTT 1 cut(s) 429
AclWI GGATC 1 cut(s) 410
AfaI GTAC 1 cut(s) 394
AfiI CCNNNNNNNGG 2 cut(s) 259, 402
AgeI ACCGGT 1 cut(s) 221
AjiI CACGTC 2 cut(s) 240, 378
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 2 cut(s) 48, 353
AluI AGCT 2 cut(s) 48, 353
Alw21I GWGCWC 1 cut(s) 221
AlwI GGATC 1 cut(s) 410
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 2 cut(s) 137, 270
ApeKI GCWGC 1 cut(s) 164
AsiGI ACCGGT 1 cut(s) 221
Asp718I GGTACC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 236, 385
AvaI CYCGRG 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 176
BccI CCATC 1 cut(s) 253
BceAI ACGGC 3 cut(s) 124, 230, 322
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 2 cut(s) 123, 165
BlpI GCTNAGC 1 cut(s) 49
BlsI GCNGC 2 cut(s) 124, 166
Bme1390I CCNGG 1 cut(s) 423
BmeT110I CYCGRG 1 cut(s) 117
BmgBI CACGTC 2 cut(s) 240, 378
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 1 cut(s) 423
Bpu1102I GCTNAGC 1 cut(s) 49
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 402
Bse118I RCCGGY 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 316
BseBI CCWGG 1 cut(s) 423
BseGI GGATG 2 cut(s) 157, 264
BseLI CCNNNNNNNGG 2 cut(s) 259, 402
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 2 cut(s) 63, 363
BseRI GAGGAG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 1 cut(s) 176
BseYI CCCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 31
BshFI GGCC 2 cut(s) 139, 272
BshNI GGYRCC 1 cut(s) 392
BshTI ACCGGT 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 259, 402
BsnI GGCC 2 cut(s) 139, 272
BsoBI CYCGRG 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 221, 239
Bsp143I GATC 1 cut(s) 415
Bsp1720I GCTNAGC 1 cut(s) 49
BspACI CCGC 3 cut(s) 86, 122, 263
BspANI GGCC 2 cut(s) 139, 272
BspCNI CTCAG 2 cut(s) 62, 362
BspLI GGNNCC 1 cut(s) 394
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 221
BssMI GATC 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 1 cut(s) 386
BstAPI GCANNNNNTGC 1 cut(s) 170
BstDEI CTNAG 2 cut(s) 49, 349
BstF5I GGATG 2 cut(s) 157, 264
BstKTI GATC 1 cut(s) 418
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 5 cut(s) 45, 122, 170, 269, 328
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstSLI GKGCMC 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 176
BsuRI GGCC 2 cut(s) 139, 272
BtrI CACGTC 2 cut(s) 240, 378
BtsCI GGATG 2 cut(s) 157, 264
BtsIMutI CAGTG 1 cut(s) 391
BveI ACCTGC 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 393
CspAI ACCGGT 1 cut(s) 221
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 3 cut(s) 71, 147, 297
CviJI RGCY 7 cut(s) 48, 53, 139, 167, 272, 353, 445
CviKI_1 RGCY 7 cut(s) 48, 53, 139, 167, 272, 353, 445
CviQI GTAC 1 cut(s) 393
DdeI CTNAG 2 cut(s) 49, 349
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
EciI GGCGGA 1 cut(s) 278
Eco88I CYCGRG 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 421
FaeI CATG 3 cut(s) 74, 150, 300
FaiI YATR 7 cut(s) 72, 148, 171, 183, 298, 327, 414
FatI CATG 3 cut(s) 70, 146, 296
Fnu4HI GCNGC 2 cut(s) 123, 165
FokI GGATG 2 cut(s) 164, 271
Fsp4HI GCNGC 2 cut(s) 123, 165
GluI GCNGC 2 cut(s) 123, 165
GsaI CCCAGC 1 cut(s) 216
HaeIII GGCC 2 cut(s) 139, 272
HapII CCGG 1 cut(s) 222
Hin1II CATG 3 cut(s) 74, 150, 300
HinfI GANTC 1 cut(s) 287
HpaII CCGG 1 cut(s) 222
HphI GGTGA 2 cut(s) 236, 385
Hpy166II GTNNAC 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 65, 406
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 3 cut(s) 239, 377, 429
HpyCH4V TGCA 6 cut(s) 12, 39, 173, 368, 381, 408
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 122, 170, 269, 328
HpyF3I CTNAG 2 cut(s) 49, 349
HpySE526I ACGT 3 cut(s) 239, 377, 429
Hsp92II CATG 3 cut(s) 74, 150, 300
KpnI GGTACC 1 cut(s) 396
Kzo9I GATC 1 cut(s) 415
LmnI GCTCC 2 cut(s) 216, 342
LpnPI CCDG 7 cut(s) 198, 235, 266, 317, 344, 408, 435
Lsp1109I GCAGC 1 cut(s) 176
MaeII ACGT 3 cut(s) 239, 377, 429
MaeIII GTNAC 2 cut(s) 224, 373
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MhlI GDGCHC 2 cut(s) 221, 239
MlyI GAGTC 1 cut(s) 281
MnlI CCTC 5 cut(s) 41, 107, 259, 262, 383
MseI TTAA 2 cut(s) 44, 129
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 5 cut(s) 45, 122, 170, 269, 328
NdeII GATC 1 cut(s) 415
NlaIII CATG 3 cut(s) 74, 150, 300
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 2 cut(s) 224, 373
PinAI ACCGGT 1 cut(s) 221
PkrI GCNGC 2 cut(s) 124, 166
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
Psp1406I AACGTT 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 421
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 1 cut(s) 137
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
SaqAI TTAA 2 cut(s) 44, 129
SatI GCNGC 2 cut(s) 123, 165
Sau3AI GATC 1 cut(s) 415
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 2 cut(s) 221, 239
SgrAI CRCCGGYG 1 cut(s) 221
SsiI CCGC 3 cut(s) 86, 122, 263
StyD4I CCNGG 1 cut(s) 421
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 3 cut(s) 242, 380, 432
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 44, 129
Tru9I TTAA 2 cut(s) 44, 129
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 2 cut(s) 224, 373
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 2 cut(s) 224, 373
TspDTI ATGAA 1 cut(s) 388
TspRI CASTG 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.