Rh6BG128300

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001302
Physical Location & Seq
Forward (+)
20014141 .. 20015612
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG128300.1

Sequence Viewer

Length: 492 bp
ATGGAATCGTCTAAGATTTCTGTCGCTCTCATTTCACTCACAGCCATAGCCCTACTCGATTCGATTCATGCCCAAGACTCACCGCAAGACTTTCTTGATGCCCACAATGCTGCTAGAGCCGAGGTGGGTGTGGCGCCCTTGACTTGGGACGACCAAGTAGCACGTTTTGCACAAGACTATGCCAATACTCATGTAGGCGACTGCGAACTCGTCCATTCTACCGATATGCTATACGGTGAAAACCTTGCAATGAACCCCGCCATTGACATGTCGGGCACAGAAGCAGTCAACCTGTGGGTGGGAGAGAAGCCCAACTACGATTACAACTCGAACTCTTGCGCCCCCGGCCAGGTGTGTGGACATTATACGCAAGTCGTTTGGTGTAACTCGTTACGAGTTGGGTGTGCCAAAGTGAGGTGCAACAGTGGAGGTACCTTCATTGGGTGCAACTATGACCCCCCGGGAAACTGGATTGGGGAGAAACCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

163

Amino Acids

17.64

Weight (kDa)

4.54

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 32 - 151 3.6e-19 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 431
AccB1I GGYRCC 2 cut(s) 133, 431
AciI CCGC 2 cut(s) 83, 258
AcoI YGGCCR 1 cut(s) 346
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 5 cut(s) 144, 298, 349, 414, 441
AflIII ACRYGT 1 cut(s) 267
AjnI CCWGG 1 cut(s) 348
Ama87I CYCGRG 1 cut(s) 460
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 110
Asp718I GGTACC 1 cut(s) 431
AspLEI GCGC 2 cut(s) 136, 341
AsuC2I CCSGG 3 cut(s) 345, 461, 462
AsuHPI GGTGA 2 cut(s) 72, 248
AvaI CYCGRG 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 278
BanI GGYRCC 2 cut(s) 133, 431
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
BbvI GCAGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 350
BcnI CCSGG 3 cut(s) 345, 461, 462
BfaI CTAG 1 cut(s) 114
BfoI RGCGCY 1 cut(s) 137
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 4 cut(s) 345, 350, 461, 462
BmeT110I CYCGRG 1 cut(s) 460
BmiI GGNNCC 2 cut(s) 135, 433
BmrFI CCNGG 4 cut(s) 345, 350, 461, 462
BmsI GCATC 1 cut(s) 88
BpuMI CCSGG 3 cut(s) 345, 461, 462
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 4 cut(s) 120, 343, 459, 460
Bsc4I CCNNNNNNNGG 5 cut(s) 144, 298, 349, 414, 441
Bse1I ACTGG 1 cut(s) 473
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 4 cut(s) 120, 343, 459, 460
BseLI CCNNNNNNNGG 5 cut(s) 144, 298, 349, 414, 441
BseMI GCAATG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 473
BseSI GKGCMC 1 cut(s) 278
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 348
BshNI GGYRCC 2 cut(s) 133, 431
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 2 cut(s) 345, 461
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 5 cut(s) 144, 298, 349, 414, 441
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 460
Bsp1286I GDGCHC 1 cut(s) 278
BspACI CCGC 2 cut(s) 83, 258
BspANI GGCC 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 135, 433
BspT107I GGYRCC 2 cut(s) 133, 431
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 1 cut(s) 473
BssECI CCNNGG 4 cut(s) 120, 343, 459, 460
BssNI GRCGYC 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 2 cut(s) 236, 425
BstACI GRCGYC 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 12
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 2 cut(s) 136, 341
BstMWI GCNNNNNNNGC 4 cut(s) 107, 116, 167, 345
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 4 cut(s) 343, 348, 459, 460
BstSLI GKGCMC 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 356
BsuRI GGCC 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 430
CfoI GCGC 2 cut(s) 136, 341
Cfr9I CCCGGG 1 cut(s) 460
Csp6I GTAC 1 cut(s) 432
CviAII CATG 3 cut(s) 68, 191, 268
CviJI RGCY 5 cut(s) 44, 50, 119, 310, 348
CviKI_1 RGCY 5 cut(s) 44, 50, 119, 310, 348
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 1 cut(s) 12
DinI GGCGCC 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 346
Eco88I CYCGRG 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 348
EgeI GGCGCC 1 cut(s) 135
EheI GGCGCC 1 cut(s) 135
FaeI CATG 3 cut(s) 71, 194, 271
FaiI YATR 9 cut(s) 47, 69, 180, 192, 227, 232, 269, 366, 453
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 1 cut(s) 161
FatI CATG 3 cut(s) 67, 190, 267
FauI CCCGC 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 114
GlaI GCGC 2 cut(s) 135, 340
GluI GCNGC 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 1 cut(s) 348
HapII CCGG 2 cut(s) 345, 461
HhaI GCGC 2 cut(s) 136, 341
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 3 cut(s) 71, 194, 271
Hin6I GCGC 2 cut(s) 134, 339
HinP1I GCGC 2 cut(s) 134, 339
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 4 cut(s) 5, 59, 64, 77
HpaII CCGG 2 cut(s) 345, 461
HphI GGTGA 2 cut(s) 72, 248
Hpy166II GTNNAC 2 cut(s) 289, 359
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 289, 359
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 2 cut(s) 236, 425
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 4 cut(s) 170, 248, 420, 447
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 116, 167, 345
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 163
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 3 cut(s) 71, 194, 271
HspAI GCGC 2 cut(s) 134, 339
KasI GGCGCC 1 cut(s) 133
KpnI GGTACC 1 cut(s) 435
LpnPI CCDG 6 cut(s) 305, 335, 358, 362, 454, 474
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 114
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 2 cut(s) 383, 390
MhlI GDGCHC 1 cut(s) 278
Mly113I GGCGCC 1 cut(s) 134
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 3 cut(s) 115, 408, 422
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 2 cut(s) 345, 461
MspR9I CCNGG 4 cut(s) 345, 350, 461, 462
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 4 cut(s) 107, 116, 167, 345
NarI GGCGCC 1 cut(s) 134
NciI CCSGG 3 cut(s) 345, 461, 462
NlaIII CATG 3 cut(s) 71, 194, 271
NlaIV GGNNCC 2 cut(s) 135, 433
NmeAIII GCCGAG 1 cut(s) 145
NspI RCATGY 1 cut(s) 271
PciI ACATGT 1 cut(s) 267
PfeI GAWTC 3 cut(s) 5, 59, 64
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 71
PluTI GGCGCC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 71
PscI ACATGT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 135, 433
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
RseI CAYNNNNRTG 1 cut(s) 266
SatI GCNGC 1 cut(s) 111
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 4 cut(s) 345, 350, 461, 462
SduI GDGCHC 1 cut(s) 278
SetI ASST 9 cut(s) 126, 166, 246, 294, 354, 419, 433, 437, 487
SfaNI GCATC 1 cut(s) 88
SfoI GGCGCC 1 cut(s) 135
SmaI CCCGGG 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 266
SsiI CCGC 2 cut(s) 83, 258
SspDI GGCGCC 1 cut(s) 133
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 4 cut(s) 343, 348, 459, 460
TaaI ACNGT 2 cut(s) 236, 425
TaiI ACGT 1 cut(s) 166
TaqI TCGA 3 cut(s) 57, 62, 329
TfiI GAWTC 3 cut(s) 5, 59, 64
TscAI CASTG 1 cut(s) 430
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 3 cut(s) 56, 266, 427
TspMI CCCGGG 1 cut(s) 460
TspRI CASTG 1 cut(s) 430
XceI RCATGY 1 cut(s) 271
XmaI CCCGGG 1 cut(s) 460
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.