Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8203636.1

Orthogroup ID

OG0001302

Physical Location & Seq

Genomic Coordinates Forward (+)

318 .. 715

Gene Structure 398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8203636.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 398 bp

atggaatcgtctacagctaagatttctttcgctctcatttccctcacagccatagccctactcgattcgattcatgcccaagactcaccgcaagactttcttgatgcccacaatgctgctagagccgaggtgggtgtggcgcccttgacttgggacgaccaagtagcacgttttgcacaagactatgccaatactcatgtaggcgactgcgaactcgtccactctaccgatatgcgatacggtgaaaaccttgcaatgaaccccgccattgacatgtcgggcacagaagcagtcaacctgtgggtgggagagaagcccaactacgattacaactcgaactcttgcgcccccggccaggtgtgtggacattatacgcaagtcgtttggcgtaactcgtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

132

Amino Acids

14.41

Weight (kDa)

4.46

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14580 AT2G14610 AT3G19690 AT4G33720 AT4G33730
fragaria_vesca	FvH4_2g02860 FvH4_2g02912
malus_domestica	MD05G1108800.v1.1 MD05G1109100.v1.1 MD05G1109700.v1.1 MD05G1110000.v1.1
prunus_persica	Prupe.8G102800_v2.0.a1 Prupe.8G152900_v2.0.a1 Prupe.8G153100_v2.0.a1 Prupe.8G153200_v2.0.a1 Prupe.8G153500_v2.0.a1 Prupe.8G153700_v2.0.a1 Prupe.8G153800_v2.0.a1
pyrus_communis	pycom05g10520
rosa_chinensis	RchiOBHm_Chr6g0247671 RchiOBHm_Chr6g0247681 RchiOBHm_Chr6g0264301
rosa_laevigata	RLG00000014266 RLG00000014268 RLG00000014270 RLG00000015186 RLG00000015187 RLG00000036357 RLG00000036358 RLG00000036359 RLG00000036360
rosa_multiflora	Rmu_co8203636.1_g000001 Rmu_sc0000147.1_g000017 Rmu_sc0000147.1_g000029 Rmu_sc0003092.1_g000033 Rmu_sc0013122.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431690 Rroxscaffold_7G00213790 Rroxscaffold_7G00213800
rosa_rugosa	Rorug05G0527800 Rorug05G0527900 Rorug06G0011700
rosa_samantha	Rh6AG042300 Rh6AG131500 Rh6BG037200 Rh6BG128300 Rh6CG036300 Rh6CG036500 Rh6CG126700 Rh6DG033300 Rh6DG033500 Rh6DG113800
rosa_wichuraiana	Rw6G003660 Rw6G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	2 cut(s)	89, 264
AcoI	YGGCCR	1 cut(s)	352
AcyI	GRCGYC	1 cut(s)	140
AfiI	CCNNNNNNNGG	3 cut(s)	150, 304, 355
AflIII	ACRYGT	1 cut(s)	273
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	1 cut(s)	116
AspLEI	GCGC	2 cut(s)	142, 347
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	78, 254
BaeGI	GKGCMC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	139
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BbvI	GCAGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	351
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	143
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	351, 356
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	351, 356
BmsI	GCATC	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	126, 349
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 304, 355
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	126, 349
BseLI	CCNNNNNNNGG	3 cut(s)	150, 304, 355
BseMI	GCAATG	1 cut(s)	261
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	1 cut(s)	354
BshNI	GGYRCC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	150, 304, 355
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	284
BspACI	CCGC	2 cut(s)	89, 264
BspANI	GGCC	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	2 cut(s)	126, 349
BssNI	GRCGYC	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	18
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	2 cut(s)	142, 347
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 122, 173, 351
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	2 cut(s)	349, 354
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	354
CfoI	GCGC	2 cut(s)	142, 347
CviAII	CATG	3 cut(s)	74, 197, 274
CviJI	RGCY	6 cut(s)	17, 50, 56, 125, 316, 354
CviKI_1	RGCY	6 cut(s)	17, 50, 56, 125, 316, 354
DdeI	CTNAG	1 cut(s)	18
DinI	GGCGCC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	354
EgeI	GGCGCC	1 cut(s)	141
EheI	GGCGCC	1 cut(s)	141
FaeI	CATG	3 cut(s)	77, 200, 277
FaiI	YATR	7 cut(s)	53, 75, 186, 198, 233, 275, 372
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	3 cut(s)	73, 196, 273
FauI	CCCGC	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	2 cut(s)	141, 346
GluI	GCNGC	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	1 cut(s)	351
HhaI	GCGC	2 cut(s)	142, 347
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	3 cut(s)	77, 200, 277
Hin6I	GCGC	2 cut(s)	140, 345
HinP1I	GCGC	2 cut(s)	140, 345
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	4 cut(s)	5, 65, 70, 83
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	2 cut(s)	78, 254
Hpy166II	GTNNAC	4 cut(s)	12, 220, 295, 365
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	4 cut(s)	12, 220, 295, 365
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	176, 254
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 122, 173, 351
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	169
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	3 cut(s)	77, 200, 277
HspAI	GCGC	2 cut(s)	140, 345
KasI	GGCGCC	1 cut(s)	139
LpnPI	CCDG	4 cut(s)	311, 341, 364, 368
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	284
Mly113I	GGCGCC	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	2 cut(s)	53, 121
MslI	CAYNNNNRTG	1 cut(s)	272
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	2 cut(s)	351, 356
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	4 cut(s)	113, 122, 173, 351
NarI	GGCGCC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	351
NlaIII	CATG	3 cut(s)	77, 200, 277
NlaIV	GGNNCC	1 cut(s)	141
NmeAIII	GCCGAG	1 cut(s)	151
NspI	RCATGY	1 cut(s)	277
PciI	ACATGT	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	5, 65, 70
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	77
PluTI	GGCGCC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	77
PscI	ACATGT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	272
SatI	GCNGC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	351, 356
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	6 cut(s)	19, 132, 172, 252, 300, 360
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	12
SfoI	GGCGCC	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	272
SsiI	CCGC	2 cut(s)	89, 264
SspDI	GGCGCC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	349, 354
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	63, 68, 335
TfiI	GAWTC	3 cut(s)	5, 65, 70
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	62, 272
XceI	RCATGY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.