Rh6DG033500

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001302
Physical Location & Seq
Forward (+)
3398997 .. 3399413
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG033500.1

Sequence Viewer

Length: 417 bp
ATGGAATTGTCTAGGATTTCATTATCCCTCATTTCCCTCGTAGCCTTCGCCCTACTCCATTCCACTCATGCACAAAACTCACCCCAGGACTACCTCAATGCCCACAACAGTGCTCGAGCCGCCGTGGGCGTGGGAGGCTTGACATGGGACACTAATCTAGCTACTTATGCGCAAAGATATGCTAATTCACATATTGGTGATTGCAACCTGGTGCATTCTGGTGGGCCTTACGGCGAAAACCTTGCAAAGAGCACCGGCGACTTATCAGGCACATCTGCTGTGAACTTGTGGGTGGGAGAGAAGGCAAACTATGATTACAACTCTAACTCACTCACAACATATATAAGTAACATCAGGAATTACCAAGAATATTCGGGGACGACTGGACGAGCTTTTGTCTTTGACTATAGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

138

Amino Acids

14.95

Weight (kDa)

5.87

Isoelectric Point (pI)

26.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 32 - 114 1.1e-07 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 171
AciI CCGC 1 cut(s) 120
AjnI CCWGG 2 cut(s) 84, 207
AleI CACNNNNGTG 1 cut(s) 108
AluBI AGCT 2 cut(s) 161, 392
AluI AGCT 2 cut(s) 161, 392
Alw21I GWGCWC 2 cut(s) 115, 254
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 72, 209
AvaI CYCGRG 1 cut(s) 114
Bbv12I GWGCWC 2 cut(s) 115, 254
BceAI ACGGC 2 cut(s) 107, 247
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 2 cut(s) 86, 209
BfaI CTAG 2 cut(s) 12, 158
BfmI CTRYAG 1 cut(s) 406
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 86, 209
BmeT110I CYCGRG 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 86, 209
BsaJI CCNNGG 2 cut(s) 84, 123
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 388
BseBI CCWGG 2 cut(s) 86, 209
BseDI CCNNGG 2 cut(s) 84, 123
BseNI ACTGG 1 cut(s) 388
BshFI GGCC 1 cut(s) 226
BsiHKAI GWGCWC 2 cut(s) 115, 254
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 2 cut(s) 161, 391
BsmFI GGGAC 2 cut(s) 161, 391
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 115, 254
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 1 cut(s) 388
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 84, 123
Bst2UI CCWGG 2 cut(s) 86, 209
Bst4CI ACNGT 1 cut(s) 110
BstDSI CCRYGG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 172
BstMWI GCNNNNNNNGC 3 cut(s) 119, 135, 167
BstNI CCWGG 2 cut(s) 86, 209
BstSCI CCNGG 2 cut(s) 84, 207
BstSFI CTRYAG 1 cut(s) 406
BsuRI GGCC 1 cut(s) 226
BtgI CCRYGG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 115
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 224
CsiI ACCWGGT 1 cut(s) 207
CviAII CATG 2 cut(s) 68, 144
CviJI RGCY 6 cut(s) 44, 119, 138, 161, 226, 392
CviKI_1 RGCY 6 cut(s) 44, 119, 138, 161, 226, 392
Eco88I CYCGRG 1 cut(s) 114
EcoRII CCWGG 2 cut(s) 84, 207
FaeI CATG 2 cut(s) 71, 147
FaqI GGGAC 2 cut(s) 161, 391
FatI CATG 2 cut(s) 67, 143
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 2 cut(s) 12, 158
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 226
HapII CCGG 1 cut(s) 255
HhaI GCGC 1 cut(s) 172
Hin1II CATG 2 cut(s) 71, 147
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HpaII CCGG 1 cut(s) 255
HphI GGTGA 2 cut(s) 72, 209
Hpy166II GTNNAC 1 cut(s) 283
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 55, 295
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 71, 204, 214, 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 135, 167
Hsp92II CATG 2 cut(s) 71, 147
HspAI GCGC 1 cut(s) 170
LpnPI CCDG 9 cut(s) 71, 98, 194, 204, 221, 252, 268, 340, 369
MabI ACCWGGT 1 cut(s) 207
MaeI CTAG 2 cut(s) 12, 158
MaeIII GTNAC 1 cut(s) 347
MhlI GDGCHC 2 cut(s) 115, 254
MluCI AATT 3 cut(s) 5, 184, 358
MnlI CCTC 4 cut(s) 38, 47, 104, 128
MslI CAYNNNNRTG 3 cut(s) 108, 195, 219
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 2 cut(s) 86, 209
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 2 cut(s) 86, 209
MwoI GCNNNNNNNGC 3 cut(s) 119, 135, 167
NlaIII CATG 2 cut(s) 71, 147
NsbI TGCGCA 1 cut(s) 171
OliI CACNNNNGTG 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 114
PctI GAATGC 1 cut(s) 214
PkrI GCNGC 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 84, 207
PspGI CCWGG 2 cut(s) 84, 207
PspPI GGNCC 1 cut(s) 224
PspXI VCTCGAGB 1 cut(s) 114
RseI CAYNNNNRTG 3 cut(s) 108, 195, 219
SatI GCNGC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 86, 209
SduI GDGCHC 2 cut(s) 115, 254
SetI ASST 5 cut(s) 96, 163, 210, 243, 394
SexAI ACCWGGT 1 cut(s) 207
SfcI CTRYAG 1 cut(s) 406
Sfr274I CTCGAG 1 cut(s) 114
SgrAI CRCCGGYG 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 114
SmiMI CAYNNNNRTG 3 cut(s) 108, 195, 219
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 3 cut(s) 5, 184, 358
SsiI CCGC 1 cut(s) 120
SspI AATATT 1 cut(s) 371
SspMI CTAG 2 cut(s) 12, 158
StyD4I CCNGG 2 cut(s) 84, 207
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 115
TasI AATT 3 cut(s) 5, 184, 358
TauI GCSGC 1 cut(s) 122
TscAI CASTG 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 9
TspRI CASTG 1 cut(s) 115
XhoI CTCGAG 1 cut(s) 114
XspI CTAG 2 cut(s) 12, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.