RLG00000036359

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001302
Physical Location & Seq
Forward (+)
79665684 .. 79666169
486 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036359

Sequence Viewer

Length: 486 bp
ATGGAATTGTCTAAGATTTCATTATCCCTCATTTTCCTCGTAGCCTTCGCCCTACTCCATTCCACTCATGCACAAAACTCACCCCAAGACTACCTCAATGCCCACAACAGTGCTCGAGCCGCCGTGGGCGTGGGAGGCTTGACATGGGACACTAATCTAGCTGCTTATGCACAAAGATATGCTAAGTCACATATTGGTGATTGCAACCTGGTGCATTCTGGTGGGCCTTACGGCGAAAACCTTGCAAAGAGCACCGGCGACTTATCAGGCACATCTGCTGTGAACTTGTGGGTGGGAGAGAAGGCAAACTATGATTACAACTCTAACACATGTGCTTCTGGCAAGGTCTGTGGCCATTATACGCAGGTCGTTTGGCGCAACTCGACACGTGTGGGGTGTGCCAAAGTGAGGTGCAACAATGGAGGCACTTTCATCGGGTGCAATTATGATCCCAGGGGAAACATCGTTGGTCAGAAGCCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

162

Amino Acids

17.23

Weight (kDa)

8.75

Isoelectric Point (pI)

18.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 32 - 149 3.6e-19 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 355
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 443
AcoI YGGCCR 1 cut(s) 352
AcvI CACGTG 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 408
AflIII ACRYGT 3 cut(s) 329, 386, 388
AjnI CCWGG 2 cut(s) 207, 452
AleI CACNNNNGTG 1 cut(s) 108
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw21I GWGCWC 2 cut(s) 115, 254
AlwI GGATC 1 cut(s) 443
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 2 cut(s) 224, 352
ApeKI GCWGC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 72, 209
AvaI CYCGRG 1 cut(s) 114
BalI TGGCCA 1 cut(s) 354
BbrPI CACGTG 1 cut(s) 389
Bbv12I GWGCWC 2 cut(s) 115, 254
BbvI GCAGC 1 cut(s) 148
BceAI ACGGC 2 cut(s) 107, 247
BcgI CGANNNNNNTGC 4 cut(s) 224, 258, 415, 449
BciT130I CCWGG 2 cut(s) 209, 454
BfaI CTAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 2 cut(s) 120, 162
BlsI GCNGC 2 cut(s) 121, 163
Bme1390I CCNGG 2 cut(s) 209, 454
BmeT110I CYCGRG 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 209, 454
BsaAI YACGTR 1 cut(s) 389
BsaJI CCNNGG 3 cut(s) 123, 452, 453
Bsc4I CCNNNNNNNGG 1 cut(s) 408
Bse118I RCCGGY 1 cut(s) 254
BseBI CCWGG 2 cut(s) 209, 454
BseDI CCNNGG 3 cut(s) 123, 452, 453
BseLI CCNNNNNNNGG 1 cut(s) 408
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 2 cut(s) 226, 354
BsiHKAI GWGCWC 2 cut(s) 115, 254
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 2 cut(s) 226, 354
BsoBI CYCGRG 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 115, 254
Bsp143I GATC 1 cut(s) 448
BspACI CCGC 1 cut(s) 120
BspANI GGCC 2 cut(s) 226, 354
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 1 cut(s) 443
BsrFI RCCGGY 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 3 cut(s) 123, 452, 453
BssMI GATC 1 cut(s) 448
Bst2UI CCWGG 2 cut(s) 209, 454
Bst4CI ACNGT 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 389
BstDEI CTNAG 2 cut(s) 12, 183
BstDSI CCRYGG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 1 cut(s) 451
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 3 cut(s) 119, 135, 167
BstNI CCWGG 2 cut(s) 209, 454
BstNSI RCATGY 1 cut(s) 333
BstSCI CCNGG 2 cut(s) 207, 452
BstV1I GCAGC 1 cut(s) 148
BsuRI GGCC 2 cut(s) 226, 354
BtgI CCRYGG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 115
BveI ACCTGC 1 cut(s) 355
CfoI GCGC 1 cut(s) 378
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 224
CsiI ACCWGGT 1 cut(s) 207
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 3 cut(s) 68, 144, 330
CviJI RGCY 7 cut(s) 44, 119, 138, 161, 226, 354, 478
CviKI_1 RGCY 7 cut(s) 44, 119, 138, 161, 226, 354, 478
DdeI CTNAG 2 cut(s) 12, 183
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 352
Eco72I CACGTG 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 114
EcoRII CCWGG 2 cut(s) 207, 452
FaeI CATG 3 cut(s) 71, 147, 333
FaiI YATR 9 cut(s) 69, 145, 168, 180, 192, 312, 331, 360, 447
FaqI GGGAC 1 cut(s) 161
FatI CATG 3 cut(s) 67, 143, 329
Fnu4HI GCNGC 2 cut(s) 120, 162
Fsp4HI GCNGC 2 cut(s) 120, 162
FspBI CTAG 1 cut(s) 158
GlaI GCGC 1 cut(s) 377
GluI GCNGC 2 cut(s) 120, 162
HaeIII GGCC 2 cut(s) 226, 354
HapII CCGG 1 cut(s) 255
HhaI GCGC 1 cut(s) 378
Hin1II CATG 3 cut(s) 71, 147, 333
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HpaII CCGG 1 cut(s) 255
HphI GGTGA 2 cut(s) 72, 209
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 1 cut(s) 474
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 55, 295
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 7 cut(s) 71, 170, 204, 214, 245, 414, 441
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 135, 167
HpyF3I CTNAG 2 cut(s) 12, 183
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 3 cut(s) 71, 147, 333
HspAI GCGC 1 cut(s) 376
Kzo9I GATC 1 cut(s) 448
LpnPI CCDG 9 cut(s) 194, 204, 221, 252, 268, 324, 350, 439, 466
Lsp1109I GCAGC 1 cut(s) 148
MabI ACCWGGT 1 cut(s) 207
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 1 cut(s) 186
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MhlI GDGCHC 2 cut(s) 115, 254
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 2 cut(s) 5, 442
MluNI TGGCCA 1 cut(s) 354
MnlI CCTC 6 cut(s) 38, 47, 104, 128, 402, 416
Mox20I TGGCCA 1 cut(s) 354
MscI TGGCCA 1 cut(s) 354
MslI CAYNNNNRTG 3 cut(s) 108, 195, 219
Msp20I TGGCCA 1 cut(s) 354
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 2 cut(s) 209, 454
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 2 cut(s) 209, 454
MwoI GCNNNNNNNGC 3 cut(s) 119, 135, 167
NdeII GATC 1 cut(s) 448
NlaIII CATG 3 cut(s) 71, 147, 333
NmuCI GTSAC 1 cut(s) 186
NspI RCATGY 1 cut(s) 333
OliI CACNNNNGTG 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 114
PasI CCCWGGG 1 cut(s) 453
PciI ACATGT 1 cut(s) 329
PctI GAATGC 1 cut(s) 214
PkrI GCNGC 2 cut(s) 121, 163
PmaCI CACGTG 1 cut(s) 389
PmlI CACGTG 1 cut(s) 389
Ppu21I YACGTR 1 cut(s) 389
PscI ACATGT 1 cut(s) 329
Psp6I CCWGG 2 cut(s) 207, 452
PspCI CACGTG 1 cut(s) 389
PspGI CCWGG 2 cut(s) 207, 452
PspPI GGNCC 1 cut(s) 224
PspXI VCTCGAGB 1 cut(s) 114
RseI CAYNNNNRTG 3 cut(s) 108, 195, 219
SatI GCNGC 2 cut(s) 120, 162
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 209, 454
SduI GDGCHC 2 cut(s) 115, 254
SetI ASST 8 cut(s) 96, 163, 210, 243, 348, 369, 391, 413
SexAI ACCWGGT 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 114
SgrAI CRCCGGYG 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 114
SmiMI CAYNNNNRTG 3 cut(s) 108, 195, 219
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 2 cut(s) 5, 442
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 207, 452
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 391
TaqI TCGA 2 cut(s) 115, 383
TasI AATT 2 cut(s) 5, 442
TauI GCSGC 1 cut(s) 122
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 186
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 186
TspDTI ATGAA 2 cut(s) 9, 421
TspRI CASTG 1 cut(s) 115
XceI RCATGY 1 cut(s) 333
XhoI CTCGAG 1 cut(s) 114
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.