Rorug06G0011700

Belongs to the CRISP family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
1601323 .. 1601661
339 bp
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UTR
Exon/CDS
Intron
Rorug06G0011700.1

Sequence Viewer

Length: 264 bp
ATGCTTCCGTTTGATCAGCACAGTGCCGCGGATTGGAGGTTCCTACGAGCTTCGAATGCCTTGGAAGAAGACTTTGTTGCAGAATTTGTGCCTTTGGAGGGAGCTGAAGAAGGAGTAGGTAGCTTCTTGGGCAGCATCTGTTCCCAGCGGTCCTTGGGGACTGCTCTTGATGCTTCTGATGATGATGATGATGAGAGAAGAATGAGAGCAACAAGAGTGAAGAGCAAGCACTTGTGCCTCCAAGAACCTAACATTGTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

9.7

Weight (kDa)

4.52

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 29
AciI CCGC 3 cut(s) 27, 29, 148
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 33, 98
AgsI TTSAA 1 cut(s) 260
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 3 cut(s) 50, 104, 123
AluI AGCT 3 cut(s) 50, 104, 123
AlwNI CAGNNNCTG 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 150
AsuII TTCGAA 1 cut(s) 53
AvaII GGWCC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 144
BclI TGATCA 1 cut(s) 13
BisI GCNGC 2 cut(s) 27, 133
BlsI GCNGC 2 cut(s) 28, 134
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 41
BmsI GCATC 2 cut(s) 144, 160
BpiI GAAGAC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 27, 60, 153
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 98
BseDI CCNNGG 3 cut(s) 27, 60, 153
BseLI CCNNNNNNNGG 2 cut(s) 33, 98
BseXI GCAGC 1 cut(s) 144
BseYI CCCAGC 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 33, 98
BsmFI GGGAC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 61
Bsp119I TTCGAA 1 cut(s) 53
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 3 cut(s) 27, 29, 148
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 41
BspQI GCTCTTC 1 cut(s) 215
BspT104I TTCGAA 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 27, 60, 153
BssMI GATC 1 cut(s) 13
BssT1I CCWWGG 2 cut(s) 60, 153
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 215
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 227
BstDSI CCRYGG 1 cut(s) 27
BstFNI CGCG 1 cut(s) 29
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 3 cut(s) 56, 129, 170
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 227
CaiI CAGNNNCTG 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 150
Cfr42I CCGCGG 1 cut(s) 30
CviJI RGCY 3 cut(s) 50, 104, 123
CviKI_1 RGCY 3 cut(s) 50, 104, 123
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco130I CCWWGG 2 cut(s) 60, 153
Eco47I GGWCC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 126
EcoT14I CCWWGG 2 cut(s) 60, 153
ErhI CCWWGG 2 cut(s) 60, 153
FaqI GGGAC 1 cut(s) 172
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 27, 133
Fsp4HI GCNGC 2 cut(s) 27, 133
GluI GCNGC 2 cut(s) 27, 133
GsaI CCCAGC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 129, 170
Ksp22I TGATCA 1 cut(s) 13
KspI CCGCGG 1 cut(s) 30
Kzo9I GATC 1 cut(s) 13
LguI GCTCTTC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 1 cut(s) 158
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 2 cut(s) 144, 160
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 5 cut(s) 77, 80, 119, 210, 232
MluCI AATT 1 cut(s) 83
MnlI CCTC 3 cut(s) 30, 91, 248
MspA1I CMGCKG 2 cut(s) 29, 148
Mva1269I GAATGC 1 cut(s) 61
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 56, 129, 170
NdeII GATC 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 41
NspV TTCGAA 1 cut(s) 53
PciSI GCTCTTC 1 cut(s) 215
PctI GAATGC 1 cut(s) 61
PkrI GCNGC 2 cut(s) 28, 134
PspFI CCCAGC 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 150
PstNI CAGNNNCTG 1 cut(s) 138
SacII CCGCGG 1 cut(s) 30
SapI GCTCTTC 1 cut(s) 215
SatI GCNGC 2 cut(s) 27, 133
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 1 cut(s) 150
SetI ASST 6 cut(s) 41, 52, 106, 121, 125, 250
SfaNI GCATC 2 cut(s) 144, 160
Sfr303I CCGCGG 1 cut(s) 30
SfuI TTCGAA 1 cut(s) 53
SgrBI CCGCGG 1 cut(s) 30
SinI GGWCC 1 cut(s) 150
Sse9I AATT 1 cut(s) 83
SsiI CCGC 3 cut(s) 27, 29, 148
StyI CCWWGG 2 cut(s) 60, 153
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 53
TasI AATT 1 cut(s) 83
TauI GCSGC 1 cut(s) 29
TscAI CASTG 1 cut(s) 28
TseI GCWGC 1 cut(s) 132
TspRI CASTG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.