Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001302

Physical Location & Seq

Genomic Coordinates Reverse (-)

50178415 .. 50179971

Gene Structure 1557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014268

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGATTCGTCTAAGATTTCTTTCGCTCTCATTTCCCTCACAGCCATAGCCCTACTCGATTCGATTCATGCCCAAGACTCACCGCAAGACTTTCTTGATGCCCACAATGCTGCTAGAGCCGAGGTGGGTGTGGCGCCCTTGACTTGGGACGACCAAGTAGCACGTTTTGCACAAGACTATGCCAATACTCATGTAGGCGACTGCCAACTCGTCCATTCTACCGATATGCTATACGGTGAAAACCTTGCAATGAACCCCGCCATTGACATGTCGGGCACAGAAGCAGTCAACCTGTGGGTGGGAGAGAAGCCCAACTACGATTACAACTCGAACTCTTGCGCCGCCGGCCAGGTGTGTGGACATTATACGCAAGTCGTTTGGCGTAACTCGTTACGAGTTGGGTGTGCCAAAGTGAGGTGCAACAGTGGAGAGGCGTTCTTTTTCATTCCAGCCAAAGCTGCATTGAAGACCTACCAGTTCGATATTCAAGTGAAGAATGTGAGCAGGTTGTGCCATTCTAAGCCAATTGTTACAGTTAATGGGATGTTCCCTGGACCTACAATCTATGCTAGAGAAGGCAATCTATGGTTGGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

200

Amino Acids

21.75

Weight (kDa)

5.59

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	32 - 148	1.7e-18	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14580 AT2G14610 AT3G19690 AT4G33720 AT4G33730
fragaria_vesca	FvH4_2g02860 FvH4_2g02912
malus_domestica	MD05G1108800.v1.1 MD05G1109100.v1.1 MD05G1109700.v1.1 MD05G1110000.v1.1
prunus_persica	Prupe.8G102800_v2.0.a1 Prupe.8G152900_v2.0.a1 Prupe.8G153100_v2.0.a1 Prupe.8G153200_v2.0.a1 Prupe.8G153500_v2.0.a1 Prupe.8G153700_v2.0.a1 Prupe.8G153800_v2.0.a1
pyrus_communis	pycom05g10520
rosa_chinensis	RchiOBHm_Chr6g0247671 RchiOBHm_Chr6g0247681 RchiOBHm_Chr6g0264301
rosa_laevigata	RLG00000014266 RLG00000014268 RLG00000014270 RLG00000015186 RLG00000015187 RLG00000036357 RLG00000036358 RLG00000036359 RLG00000036360
rosa_multiflora	Rmu_co8203636.1_g000001 Rmu_sc0000147.1_g000017 Rmu_sc0000147.1_g000029 Rmu_sc0003092.1_g000033 Rmu_sc0013122.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431690 Rroxscaffold_7G00213790 Rroxscaffold_7G00213800
rosa_rugosa	Rorug05G0527800 Rorug05G0527900 Rorug06G0011700
rosa_samantha	Rh6AG042300 Rh6AG131500 Rh6BG037200 Rh6BG128300 Rh6CG036300 Rh6CG036500 Rh6CG126700 Rh6DG033300 Rh6DG033500 Rh6DG113800
rosa_wichuraiana	Rw6G003660 Rw6G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	495
AccB1I	GGYRCC	1 cut(s)	133
AciI	CCGC	3 cut(s)	83, 258, 342
AcoI	YGGCCR	1 cut(s)	346
AcyI	GRCGYC	1 cut(s)	134
AfiI	CCNNNNNNNGG	3 cut(s)	144, 298, 414
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	2 cut(s)	466, 488
AjnI	CCWGG	2 cut(s)	348, 550
AluBI	AGCT	1 cut(s)	458
AluI	AGCT	1 cut(s)	458
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	110, 458
AspLEI	GCGC	2 cut(s)	136, 341
AspS9I	GGNCC	1 cut(s)	554
AsuHPI	GGTGA	2 cut(s)	72, 248
AvaII	GGWCC	1 cut(s)	554
BaeGI	GKGCMC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	133
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BbsI	GAAGAC	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	97, 445
BciT130I	CCWGG	2 cut(s)	350, 552
BfaI	CTAG	2 cut(s)	114, 570
BfoI	RGCGCY	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	495
BisI	GCNGC	3 cut(s)	111, 342, 459
BlsI	GCNGC	3 cut(s)	112, 343, 460
Bme1390I	CCNGG	2 cut(s)	350, 552
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	2 cut(s)	350, 552
BmsI	GCATC	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	120, 550
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 298, 414
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	475
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	350, 552
BseDI	CCNNGG	2 cut(s)	120, 550
BseGI	GGATG	1 cut(s)	549
BseLI	CCNNNNNNNGG	3 cut(s)	144, 298, 414
BseMI	GCAATG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	475
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	97, 445
BshFI	GGCC	1 cut(s)	348
BshNI	GGYRCC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	3 cut(s)	144, 298, 414
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	278
BspACI	CCGC	3 cut(s)	83, 258, 342
BspANI	GGCC	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	120, 550
BssNI	GRCGYC	1 cut(s)	134
Bst2UI	CCWGG	2 cut(s)	350, 552
Bst4CI	ACNGT	3 cut(s)	236, 425, 535
BstACI	GRCGYC	1 cut(s)	134
BstAPI	GCANNNNNTGC	2 cut(s)	167, 510
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	2 cut(s)	12, 519
BstF5I	GGATG	1 cut(s)	549
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	2 cut(s)	136, 341
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 116, 167, 345, 458, 510
BstNI	CCWGG	2 cut(s)	350, 552
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	348, 550
BstSLI	GKGCMC	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	97, 445
BstV2I	GAAGAC	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	430
BveI	ACCTGC	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	346
CfoI	GCGC	2 cut(s)	136, 341
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	554
CviAII	CATG	3 cut(s)	68, 191, 268
CviJI	RGCY	8 cut(s)	44, 50, 119, 310, 348, 452, 458, 523
CviKI_1	RGCY	8 cut(s)	44, 50, 119, 310, 348, 452, 458, 523
DdeI	CTNAG	2 cut(s)	12, 519
DinI	GGCGCC	1 cut(s)	135
EaeI	YGGCCR	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	554
EcoRII	CCWGG	2 cut(s)	348, 550
EgeI	GGCGCC	1 cut(s)	135
EheI	GGCGCC	1 cut(s)	135
FaeI	CATG	3 cut(s)	71, 194, 271
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	3 cut(s)	67, 190, 267
FauI	CCCGC	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	111, 342, 459
FokI	GGATG	1 cut(s)	556
Fsp4HI	GCNGC	3 cut(s)	111, 342, 459
FspBI	CTAG	2 cut(s)	114, 570
GlaI	GCGC	2 cut(s)	135, 340
GluI	GCNGC	3 cut(s)	111, 342, 459
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	2 cut(s)	136, 341
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	3 cut(s)	71, 194, 271
Hin6I	GCGC	2 cut(s)	134, 339
HinP1I	GCGC	2 cut(s)	134, 339
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	4 cut(s)	5, 59, 64, 77
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	2 cut(s)	72, 248
Hpy166II	GTNNAC	2 cut(s)	289, 359
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	2 cut(s)	289, 359
HpyAV	CCTTC	1 cut(s)	569
HpyCH4III	ACNGT	3 cut(s)	236, 425, 535
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	4 cut(s)	170, 248, 420, 461
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 116, 167, 345, 458, 510
HpyF3I	CTNAG	2 cut(s)	12, 519
HpySE526I	ACGT	1 cut(s)	163
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	3 cut(s)	71, 194, 271
HspAI	GCGC	2 cut(s)	134, 339
KasI	GGCGCC	1 cut(s)	133
KroI	GCCGGC	1 cut(s)	344
KroNI	GCCGGC	1 cut(s)	346
LpnPI	CCDG	9 cut(s)	305, 335, 358, 362, 462, 488, 490, 537, 564
Lsp1109I	GCAGC	2 cut(s)	97, 445
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	114, 570
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	3 cut(s)	383, 390, 529
MboII	GAAGA	2 cut(s)	478, 505
MfeI	CAATTG	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	1 cut(s)	525
Mly113I	GGCGCC	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	4 cut(s)	47, 115, 408, 424
MroNI	GCCGGC	1 cut(s)	344
MseI	TTAA	2 cut(s)	537, 598
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	350, 552
MunI	CAATTG	1 cut(s)	525
MvaI	CCWGG	2 cut(s)	350, 552
MwoI	GCNNNNNNNGC	6 cut(s)	107, 116, 167, 345, 458, 510
NaeI	GCCGGC	1 cut(s)	346
NarI	GGCGCC	1 cut(s)	134
NgoMIV	GCCGGC	1 cut(s)	344
NlaIII	CATG	3 cut(s)	71, 194, 271
NlaIV	GGNNCC	1 cut(s)	135
NmeAIII	GCCGAG	1 cut(s)	145
NspI	RCATGY	1 cut(s)	271
PciI	ACATGT	1 cut(s)	267
PdiI	GCCGGC	1 cut(s)	346
PfeI	GAWTC	3 cut(s)	5, 59, 64
PkrI	GCNGC	3 cut(s)	112, 343, 460
PleI	GAGTC	1 cut(s)	71
PluTI	GGCGCC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	71
PscI	ACATGT	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	348, 550
PspGI	CCWGG	2 cut(s)	348, 550
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	554
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	537, 598
SatI	GCNGC	3 cut(s)	111, 342, 459
Sau96I	GGNCC	1 cut(s)	554
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	350, 552
SduI	GDGCHC	1 cut(s)	278
SfaNI	GCATC	1 cut(s)	88
SfoI	GGCGCC	1 cut(s)	135
SinI	GGWCC	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	525
SsiI	CCGC	3 cut(s)	83, 258, 342
SspDI	GGCGCC	1 cut(s)	133
SspMI	CTAG	2 cut(s)	114, 570
StyD4I	CCNGG	2 cut(s)	348, 550
TaaI	ACNGT	3 cut(s)	236, 425, 535
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	4 cut(s)	57, 62, 329, 480
TasI	AATT	1 cut(s)	525
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	3 cut(s)	5, 59, 64
Tru1I	TTAA	2 cut(s)	537, 598
Tru9I	TTAA	2 cut(s)	537, 598
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	2 cut(s)	110, 458
TspDTI	ATGAA	3 cut(s)	56, 266, 433
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	554
XceI	RCATGY	1 cut(s)	271
XspI	CTAG	2 cut(s)	114, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.