RLG00000015187

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001302
Physical Location & Seq
Reverse (-)
62791157 .. 62791793
637 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015187

Sequence Viewer

Length: 495 bp
ATGGAATTGTCTAAGATTTCATTCGCTCTCATTTCCTTCACAGCCATTGCCCTTCTCCATTCCATTCATGCCCAAGACTCACCGCAAGACTATCTTGATGCCCACAACGCGGCTAGAGCTGCGGTGGGTGTTGGGCCTTTGACATGGGATGACCAAGTAGCGCGTTTTGCACAAGACTATGCCAATACCCATGTAGGTGACTGCCAACTCGTCCATTCCGGTGGGAACGGTGGGAAATACGGTGAAAACCTTGCGATGAGCACCGGCGACTTGTCAGGCACAGATGCCGTCAACATGTGGGTAGGAGAGAAGGCCGACTATGATTACAACTCGAATACTTGCGCCGCTGGCAAGGTTTGTGGACATTATACGCAGGTCGTTTGGCGCAACTCGCTACATGTTGGGTGTGCTAAAGTGAGGTGCAACAGTGGAGGTACCTTTATTGGGTGCAACTATGATCCCCCGGGCAACTATGTTGGGCAAAAACCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

165

Amino Acids

17.52

Weight (kDa)

5.69

Isoelectric Point (pI)

18.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 32 - 152 2.9e-22 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 364
Acc65I GGTACC 1 cut(s) 434
AccB1I GGYRCC 1 cut(s) 434
AccII CGCG 2 cut(s) 110, 163
AciI CCGC 4 cut(s) 83, 110, 122, 345
AclWI GGATC 1 cut(s) 452
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 2 cut(s) 109, 444
AflIII ACRYGT 2 cut(s) 294, 397
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw21I GWGCWC 1 cut(s) 263
AlwI GGATC 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 463
AoxI GGCC 2 cut(s) 134, 312
ApeKI GCWGC 1 cut(s) 119
Asp718I GGTACC 1 cut(s) 434
AspLEI GCGC 3 cut(s) 163, 344, 387
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 2 cut(s) 464, 465
AsuHPI GGTGA 3 cut(s) 72, 209, 254
AvaI CYCGRG 1 cut(s) 463
BanI GGYRCC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 263
BbvI GCAGC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 272
BcnI CCSGG 2 cut(s) 464, 465
BfaI CTAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 364
BisI GCNGC 3 cut(s) 111, 120, 345
BlsI GCNGC 3 cut(s) 112, 121, 346
Bme1390I CCNGG 2 cut(s) 464, 465
BmeT110I CYCGRG 1 cut(s) 463
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 436
BmrFI CCNGG 2 cut(s) 464, 465
BmsI GCATC 2 cut(s) 88, 274
BpuMI CCSGG 2 cut(s) 464, 465
BsaJI CCNNGG 2 cut(s) 462, 463
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 444
Bse118I RCCGGY 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 462, 463
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 2 cut(s) 109, 444
BseMI GCAATG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 106
Bsh1236I CGCG 2 cut(s) 110, 163
BshFI GGCC 2 cut(s) 136, 314
BshNI GGYRCC 1 cut(s) 434
BsiHKAI GWGCWC 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 463
BsiSI CCGG 3 cut(s) 219, 264, 464
BslI CCNNNNNNNGG 2 cut(s) 109, 444
BsnI GGCC 2 cut(s) 136, 314
BsoBI CYCGRG 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 1 cut(s) 457
BspACI CCGC 4 cut(s) 83, 110, 122, 345
BspANI GGCC 2 cut(s) 136, 314
BspFNI CGCG 2 cut(s) 110, 163
BspLI GGNNCC 1 cut(s) 436
BspMI ACCTGC 1 cut(s) 364
BspPI GGATC 1 cut(s) 452
BspT107I GGYRCC 1 cut(s) 434
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 462, 463
BssMI GATC 1 cut(s) 457
Bst4CI ACNGT 3 cut(s) 230, 242, 428
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 2 cut(s) 110, 163
BstHHI GCGC 3 cut(s) 163, 344, 387
BstKTI GATC 1 cut(s) 460
BstMBI GATC 1 cut(s) 457
BstMWI GCNNNNNNNGC 6 cut(s) 107, 116, 119, 167, 348, 391
BstNSI RCATGY 2 cut(s) 298, 401
BstSCI CCNGG 2 cut(s) 462, 463
BstUI CGCG 2 cut(s) 110, 163
BstV1I GCAGC 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 221
BsuRI GGCC 2 cut(s) 136, 314
BtgZI GCGATG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 433
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 1 cut(s) 349
CfoI GCGC 3 cut(s) 163, 344, 387
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 134
Cfr9I CCCGGG 1 cut(s) 463
Csp6I GTAC 1 cut(s) 435
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 5 cut(s) 68, 144, 191, 295, 398
CviJI RGCY 5 cut(s) 44, 113, 119, 136, 314
CviKI_1 RGCY 5 cut(s) 44, 113, 119, 136, 314
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 459
DpnII GATC 1 cut(s) 457
Eco88I CYCGRG 1 cut(s) 463
FaeI CATG 5 cut(s) 71, 147, 194, 298, 401
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 5 cut(s) 67, 143, 190, 294, 397
Fnu4HI GCNGC 3 cut(s) 111, 120, 345
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 3 cut(s) 111, 120, 345
FspBI CTAG 1 cut(s) 114
GlaI GCGC 3 cut(s) 162, 343, 386
GluI GCNGC 3 cut(s) 111, 120, 345
HaeIII GGCC 2 cut(s) 136, 314
HapII CCGG 3 cut(s) 219, 264, 464
HhaI GCGC 3 cut(s) 163, 344, 387
Hin1II CATG 5 cut(s) 71, 147, 194, 298, 401
Hin6I GCGC 3 cut(s) 161, 342, 385
HinP1I GCGC 3 cut(s) 161, 342, 385
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 1 cut(s) 77
HpaII CCGG 3 cut(s) 219, 264, 464
HphI GGTGA 3 cut(s) 72, 209, 254
Hpy166II GTNNAC 2 cut(s) 292, 362
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 292, 362
HpyAV CCTTC 3 cut(s) 46, 62, 304
HpyCH4III ACNGT 3 cut(s) 230, 242, 428
HpyCH4V TGCA 3 cut(s) 170, 423, 450
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 116, 119, 167, 348, 391
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 5 cut(s) 71, 147, 194, 298, 401
HspAI GCGC 3 cut(s) 161, 342, 385
KpnI GGTACC 1 cut(s) 438
Kzo9I GATC 1 cut(s) 457
LpnPI CCDG 6 cut(s) 232, 261, 277, 333, 359, 477
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 2 cut(s) 88, 274
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 459
MboI GATC 1 cut(s) 457
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 1 cut(s) 5
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 2 cut(s) 411, 425
MslI CAYNNNNRTG 2 cut(s) 195, 219
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 3 cut(s) 219, 264, 464
MspR9I CCNGG 2 cut(s) 464, 465
MvnI CGCG 2 cut(s) 110, 163
MwoI GCNNNNNNNGC 6 cut(s) 107, 116, 119, 167, 348, 391
NciI CCSGG 2 cut(s) 464, 465
NdeII GATC 1 cut(s) 457
NlaIII CATG 5 cut(s) 71, 147, 194, 298, 401
NlaIV GGNNCC 1 cut(s) 436
NmuCI GTSAC 1 cut(s) 197
NspI RCATGY 2 cut(s) 298, 401
PciI ACATGT 2 cut(s) 294, 397
PkrI GCNGC 3 cut(s) 112, 121, 346
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PscI ACATGT 2 cut(s) 294, 397
PspN4I GGNNCC 1 cut(s) 436
PspPI GGNCC 1 cut(s) 134
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 2 cut(s) 195, 219
SatI GCNGC 3 cut(s) 111, 120, 345
Sau3AI GATC 1 cut(s) 457
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 464, 465
SduI GDGCHC 1 cut(s) 263
SetI ASST 9 cut(s) 121, 199, 252, 357, 378, 422, 436, 440, 490
SfaNI GCATC 2 cut(s) 88, 274
SgrAI CRCCGGYG 1 cut(s) 263
SmaI CCCGGG 1 cut(s) 465
SmiMI CAYNNNNRTG 2 cut(s) 195, 219
Sse9I AATT 1 cut(s) 5
SsiI CCGC 4 cut(s) 83, 110, 122, 345
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 462, 463
TaaI ACNGT 3 cut(s) 230, 242, 428
TaqI TCGA 1 cut(s) 332
TasI AATT 1 cut(s) 5
TauI GCSGC 2 cut(s) 113, 347
TscAI CASTG 1 cut(s) 433
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 9, 56
TspMI CCCGGG 1 cut(s) 463
TspRI CASTG 1 cut(s) 433
XceI RCATGY 2 cut(s) 298, 401
XmaI CCCGGG 1 cut(s) 463
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.