Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001302

Physical Location & Seq

Genomic Coordinates Reverse (-)

62783226 .. 62783906

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015186

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAATTGTCTAAGATTTCATTATCCCTCATTTCCCTCGTAGCCTTCGCCCTACTCCATTCCACTCATGGACAAAACTCACCCCAGGACTACCTCAATGCCCACAATAGTGCTCGAGCCGCCGTTGGCGTGGGAGGCTTGACATGGGACACTAATCTAGCTACTTATGAGCAAAGATATACTAATTCACATATTGGCGAAAACCTTACAAAGAGCACCGGCGACTTATCAGGCACATCTGCTGTGAACTTGTGGGTGGGGGAGAAGGCAAACTATAATTACAACTCTAACACATGTGCTTCTGGCAAGGTTTGTGGGCATTATACGCAGGTCGTTTGGCGCAACTTAGCACGTGTGGGGTGTGCCAAAGTGAGGTGCAACAATGGAGGTACTTTCATCGGGTGCAATTATGATCCCCGGGGAAACATCGTTGGTCAGAACCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

150

Amino Acids

16.07

Weight (kDa)

8.63

Isoelectric Point (pI)

12.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	32 - 137	6.3e-11	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14580 AT2G14610 AT3G19690 AT4G33720 AT4G33730
fragaria_vesca	FvH4_2g02860 FvH4_2g02912
malus_domestica	MD05G1108800.v1.1 MD05G1109100.v1.1 MD05G1109700.v1.1 MD05G1110000.v1.1
prunus_persica	Prupe.8G102800_v2.0.a1 Prupe.8G152900_v2.0.a1 Prupe.8G153100_v2.0.a1 Prupe.8G153200_v2.0.a1 Prupe.8G153500_v2.0.a1 Prupe.8G153700_v2.0.a1 Prupe.8G153800_v2.0.a1
pyrus_communis	pycom05g10520
rosa_chinensis	RchiOBHm_Chr6g0247671 RchiOBHm_Chr6g0247681 RchiOBHm_Chr6g0264301
rosa_laevigata	RLG00000014266 RLG00000014268 RLG00000014270 RLG00000015186 RLG00000015187 RLG00000036357 RLG00000036358 RLG00000036359 RLG00000036360
rosa_multiflora	Rmu_co8203636.1_g000001 Rmu_sc0000147.1_g000017 Rmu_sc0000147.1_g000029 Rmu_sc0003092.1_g000033 Rmu_sc0013122.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431690 Rroxscaffold_7G00213790 Rroxscaffold_7G00213800
rosa_rugosa	Rorug05G0527800 Rorug05G0527900 Rorug06G0011700
rosa_samantha	Rh6AG042300 Rh6AG131500 Rh6BG037200 Rh6BG128300 Rh6CG036300 Rh6CG036500 Rh6CG126700 Rh6DG033300 Rh6DG033500 Rh6DG113800
rosa_wichuraiana	Rw6G003660 Rw6G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	1 cut(s)	407
AcvI	CACGTG	1 cut(s)	353
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	372
AflIII	ACRYGT	2 cut(s)	293, 352
AjnI	CCWGG	1 cut(s)	84
AleI	CACNNNNGTG	1 cut(s)	108
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw21I	GWGCWC	2 cut(s)	115, 218
AlwI	GGATC	1 cut(s)	407
Ama87I	CYCGRG	2 cut(s)	114, 417
AspLEI	GCGC	1 cut(s)	342
AsuC2I	CCSGG	2 cut(s)	418, 419
AsuHPI	GGTGA	1 cut(s)	72
AvaI	CYCGRG	2 cut(s)	114, 417
BbrPI	CACGTG	1 cut(s)	353
Bbv12I	GWGCWC	2 cut(s)	115, 218
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	86
BcnI	CCSGG	2 cut(s)	418, 419
BfaI	CTAG	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	3 cut(s)	86, 418, 419
BmeT110I	CYCGRG	2 cut(s)	114, 417
BmrFI	CCNGG	3 cut(s)	86, 418, 419
BpuMI	CCSGG	2 cut(s)	418, 419
BsaAI	YACGTR	1 cut(s)	353
BsaJI	CCNNGG	4 cut(s)	84, 416, 417, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse118I	RCCGGY	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	4 cut(s)	84, 416, 417, 418
BseLI	CCNNNNNNNGG	1 cut(s)	372
BsiHKAI	GWGCWC	2 cut(s)	115, 218
BsiHKCI	CYCGRG	2 cut(s)	114, 417
BsiSI	CCGG	2 cut(s)	219, 418
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	161
BsoBI	CYCGRG	2 cut(s)	114, 417
Bsp1286I	GDGCHC	2 cut(s)	115, 218
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	1 cut(s)	407
BsrFI	RCCGGY	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	4 cut(s)	84, 416, 417, 418
BssMI	GATC	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	353
BstDEI	CTNAG	2 cut(s)	12, 346
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 135, 325
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	3 cut(s)	84, 416, 417
BveI	ACCTGC	1 cut(s)	319
CfoI	GCGC	1 cut(s)	342
Cfr10I	RCCGGY	1 cut(s)	218
Cfr9I	CCCGGG	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	390
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	3 cut(s)	68, 144, 294
CviJI	RGCY	4 cut(s)	44, 119, 138, 161
CviKI_1	RGCY	4 cut(s)	44, 119, 138, 161
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	2 cut(s)	12, 346
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
Eco72I	CACGTG	1 cut(s)	353
Eco88I	CYCGRG	2 cut(s)	114, 417
EcoRII	CCWGG	1 cut(s)	84
FaeI	CATG	3 cut(s)	71, 147, 297
FaiI	YATR	9 cut(s)	69, 145, 168, 180, 192, 276, 295, 324, 411
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	3 cut(s)	67, 143, 293
Fnu4HI	GCNGC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	120
HapII	CCGG	2 cut(s)	219, 418
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	3 cut(s)	71, 147, 297
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HpaII	CCGG	2 cut(s)	219, 418
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	438
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	2 cut(s)	55, 259
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	2 cut(s)	378, 405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 135, 325
HpyF3I	CTNAG	2 cut(s)	12, 346
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	3 cut(s)	71, 147, 297
HspAI	GCGC	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	412
LpnPI	CCDG	7 cut(s)	71, 98, 216, 232, 288, 314, 431
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	352
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MhlI	GDGCHC	2 cut(s)	115, 218
MluCI	AATT	4 cut(s)	5, 184, 277, 406
MnlI	CCTC	6 cut(s)	38, 47, 104, 128, 366, 380
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	2 cut(s)	219, 418
MspR9I	CCNGG	3 cut(s)	86, 418, 419
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	119, 135, 325
NciI	CCSGG	2 cut(s)	418, 419
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	3 cut(s)	71, 147, 297
NspI	RCATGY	1 cut(s)	297
OliI	CACNNNNGTG	1 cut(s)	108
PaeR7I	CTCGAG	1 cut(s)	114
PciI	ACATGT	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	121
PmaCI	CACGTG	1 cut(s)	353
PmlI	CACGTG	1 cut(s)	353
Ppu21I	YACGTR	1 cut(s)	353
PscI	ACATGT	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	84
PspCI	CACGTG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	84
PspXI	VCTCGAGB	1 cut(s)	114
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	108
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	412
ScrFI	CCNGG	3 cut(s)	86, 418, 419
SduI	GDGCHC	2 cut(s)	115, 218
SetI	ASST	8 cut(s)	96, 163, 207, 312, 333, 355, 377, 391
Sfr274I	CTCGAG	1 cut(s)	114
SgrAI	CRCCGGYG	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	114
SmaI	CCCGGG	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	4 cut(s)	5, 184, 277, 406
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	3 cut(s)	84, 416, 417
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	1 cut(s)	115
TasI	AATT	4 cut(s)	5, 184, 277, 406
TauI	GCSGC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	9, 385
TspMI	CCCGGG	1 cut(s)	417
XceI	RCATGY	1 cut(s)	297
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XhoI	CTCGAG	1 cut(s)	114
XmaI	CCCGGG	1 cut(s)	417
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.