Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001302

Physical Location & Seq

Genomic Coordinates Reverse (-)

64223219 .. 64226726

Gene Structure 3508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00213800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAATTGTCTAAGATTTCATTCGCTCTCATTTCCTTCACAGCCATTGCCCTACTCCATTCCATTCATGCCCAAGACTCACCGCAAGACTATCTTGATGCCCACAACGCGGCTAGAGCTGCGGTGGGTGTTGGGCCCTTGACATGGGATGACCAAGTAGCACGTTTTGCACAAGACTATGCCAATACCCATGTAGGTGACTGCCAACTCGTCCATTCTGGTGGGAAATACGGTGAAAACCTTGCGATGAGCACCGGCGACTTGTCGGGCACAGATGCCGTCAACATGTGGGTGGGAGAGAAGGCCGACTATGATTACAACTCGAATACTTGCGCCGCTGGCAAGGTTTGTGGACATTATACGCAGGTCGTTTGGCGCAACTCGCTACATGTTGGGTGCGCTAAAGTGAGGTGCAACAGTGGAGGTACCTTTATTGGGTGCAACTATGATCCCCCGGGCAACTATTTTCACACAATGCCTACCAAGAAAAGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

165

Amino Acids

17.77

Weight (kDa)

6.01

Isoelectric Point (pI)

23.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	32 - 149	3.1e-20	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14580 AT2G14610 AT3G19690 AT4G33720 AT4G33730
fragaria_vesca	FvH4_2g02860 FvH4_2g02912
malus_domestica	MD05G1108800.v1.1 MD05G1109100.v1.1 MD05G1109700.v1.1 MD05G1110000.v1.1
prunus_persica	Prupe.8G102800_v2.0.a1 Prupe.8G152900_v2.0.a1 Prupe.8G153100_v2.0.a1 Prupe.8G153200_v2.0.a1 Prupe.8G153500_v2.0.a1 Prupe.8G153700_v2.0.a1 Prupe.8G153800_v2.0.a1
pyrus_communis	pycom05g10520
rosa_chinensis	RchiOBHm_Chr6g0247671 RchiOBHm_Chr6g0247681 RchiOBHm_Chr6g0264301
rosa_laevigata	RLG00000014266 RLG00000014268 RLG00000014270 RLG00000015186 RLG00000015187 RLG00000036357 RLG00000036358 RLG00000036359 RLG00000036360
rosa_multiflora	Rmu_co8203636.1_g000001 Rmu_sc0000147.1_g000017 Rmu_sc0000147.1_g000029 Rmu_sc0003092.1_g000033 Rmu_sc0013122.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431690 Rroxscaffold_7G00213790 Rroxscaffold_7G00213800
rosa_rugosa	Rorug05G0527800 Rorug05G0527900 Rorug06G0011700
rosa_samantha	Rh6AG042300 Rh6AG131500 Rh6BG037200 Rh6BG128300 Rh6CG036300 Rh6CG036500 Rh6CG126700 Rh6DG033300 Rh6DG033500 Rh6DG113800
rosa_wichuraiana	Rw6G003660 Rw6G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	355
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	425
AccII	CGCG	1 cut(s)	110
AciI	CCGC	4 cut(s)	83, 110, 122, 336
AclWI	GGATC	1 cut(s)	443
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	3 cut(s)	109, 144, 435
AflIII	ACRYGT	2 cut(s)	285, 388
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
Alw21I	GWGCWC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	454
AoxI	GGCC	2 cut(s)	134, 303
ApaI	GGGCCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	119
Asp718I	GGTACC	1 cut(s)	425
AspLEI	GCGC	3 cut(s)	335, 378, 401
AspS9I	GGNCC	2 cut(s)	134, 135
AsuC2I	CCSGG	2 cut(s)	455, 456
AsuHPI	GGTGA	3 cut(s)	72, 209, 245
AvaI	CYCGRG	1 cut(s)	454
BaeGI	GKGCMC	2 cut(s)	138, 272
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	106
BceAI	ACGGC	1 cut(s)	263
BcnI	CCSGG	2 cut(s)	455, 456
BfaI	CTAG	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	3 cut(s)	111, 120, 336
BlsI	GCNGC	3 cut(s)	112, 121, 337
Bme1390I	CCNGG	2 cut(s)	455, 456
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	2 cut(s)	134, 135
BmiI	GGNNCC	2 cut(s)	136, 427
BmrFI	CCNGG	2 cut(s)	455, 456
BmsI	GCATC	2 cut(s)	88, 265
BpuMI	CCSGG	2 cut(s)	455, 456
BsaJI	CCNNGG	2 cut(s)	453, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 144, 435
Bse118I	RCCGGY	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	453, 454
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	3 cut(s)	109, 144, 435
BseMI	GCAATG	1 cut(s)	45
BseSI	GKGCMC	2 cut(s)	138, 272
BseXI	GCAGC	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	136, 305
BshNI	GGYRCC	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	255, 455
BslI	CCNNNNNNNGG	3 cut(s)	109, 144, 435
BsnI	GGCC	2 cut(s)	136, 305
BsoBI	CYCGRG	1 cut(s)	454
Bsp120I	GGGCCC	1 cut(s)	134
Bsp1286I	GDGCHC	3 cut(s)	138, 254, 272
Bsp143I	GATC	1 cut(s)	448
BspACI	CCGC	4 cut(s)	83, 110, 122, 336
BspANI	GGCC	2 cut(s)	136, 305
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	136, 427
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	453, 454
BssMI	GATC	1 cut(s)	448
Bst4CI	ACNGT	2 cut(s)	233, 419
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	3 cut(s)	335, 378, 401
BstKTI	GATC	1 cut(s)	451
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 116, 119, 167, 339, 382
BstNSI	RCATGY	2 cut(s)	289, 392
BstSCI	CCNGG	2 cut(s)	453, 454
BstSLI	GKGCMC	2 cut(s)	138, 272
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	136, 305
BtgZI	GCGATG	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	424
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	340
CfoI	GCGC	3 cut(s)	335, 378, 401
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	134, 135
Cfr9I	CCCGGG	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	426
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	5 cut(s)	68, 144, 191, 286, 389
CviJI	RGCY	5 cut(s)	44, 113, 119, 136, 305
CviKI_1	RGCY	5 cut(s)	44, 113, 119, 136, 305
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	138
FaeI	CATG	5 cut(s)	71, 147, 194, 289, 392
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	5 cut(s)	67, 143, 190, 285, 388
Fnu4HI	GCNGC	3 cut(s)	111, 120, 336
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	3 cut(s)	111, 120, 336
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	3 cut(s)	334, 377, 400
GluI	GCNGC	3 cut(s)	111, 120, 336
HaeIII	GGCC	2 cut(s)	136, 305
HapII	CCGG	2 cut(s)	255, 455
HhaI	GCGC	3 cut(s)	335, 378, 401
Hin1II	CATG	5 cut(s)	71, 147, 194, 289, 392
Hin6I	GCGC	3 cut(s)	333, 376, 399
HinP1I	GCGC	3 cut(s)	333, 376, 399
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	2 cut(s)	255, 455
HphI	GGTGA	3 cut(s)	72, 209, 245
Hpy166II	GTNNAC	2 cut(s)	283, 353
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	2 cut(s)	283, 353
HpyAV	CCTTC	2 cut(s)	46, 295
HpyCH4III	ACNGT	2 cut(s)	233, 419
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	3 cut(s)	170, 414, 441
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 116, 119, 167, 339, 382
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	5 cut(s)	71, 147, 194, 289, 392
HspAI	GCGC	3 cut(s)	333, 376, 399
KpnI	GGTACC	1 cut(s)	429
Kzo9I	GATC	1 cut(s)	448
LpnPI	CCDG	5 cut(s)	204, 268, 324, 350, 468
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	2 cut(s)	88, 265
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MhlI	GDGCHC	3 cut(s)	138, 254, 272
MluCI	AATT	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	2 cut(s)	402, 416
MslI	CAYNNNNRTG	3 cut(s)	195, 219, 290
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	2 cut(s)	255, 455
MspR9I	CCNGG	2 cut(s)	455, 456
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	6 cut(s)	107, 116, 119, 167, 339, 382
NciI	CCSGG	2 cut(s)	455, 456
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	5 cut(s)	71, 147, 194, 289, 392
NlaIV	GGNNCC	2 cut(s)	136, 427
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	2 cut(s)	289, 392
PciI	ACATGT	2 cut(s)	285, 388
PkrI	GCNGC	3 cut(s)	112, 121, 337
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PscI	ACATGT	2 cut(s)	285, 388
PspN4I	GGNNCC	2 cut(s)	136, 427
PspOMI	GGGCCC	1 cut(s)	134
PspPI	GGNCC	2 cut(s)	134, 135
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
RseI	CAYNNNNRTG	3 cut(s)	195, 219, 290
SatI	GCNGC	3 cut(s)	111, 120, 336
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	2 cut(s)	134, 135
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	455, 456
SduI	GDGCHC	3 cut(s)	138, 254, 272
SetI	ASST	9 cut(s)	121, 166, 199, 243, 348, 369, 413, 427, 431
SfaNI	GCATC	2 cut(s)	88, 265
SgrAI	CRCCGGYG	1 cut(s)	254
SmaI	CCCGGG	1 cut(s)	456
SmiMI	CAYNNNNRTG	3 cut(s)	195, 219, 290
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	4 cut(s)	83, 110, 122, 336
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	453, 454
TaaI	ACNGT	2 cut(s)	233, 419
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	323
TasI	AATT	1 cut(s)	5
TauI	GCSGC	2 cut(s)	113, 338
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	3 cut(s)	9, 56, 483
TspMI	CCCGGG	1 cut(s)	454
TspRI	CASTG	1 cut(s)	424
XceI	RCATGY	2 cut(s)	289, 392
XmaI	CCCGGG	1 cut(s)	454
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.