Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001302

Physical Location & Seq

Genomic Coordinates Reverse (-)

22379912 .. 22380397

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1109100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGGTTGTGCAATATTTCCCTAGCTCTCCTTTTCATTTTAGGCTCAGCCCTAATACAATCCTCTCATGCCCAAGACACACCCCAAGACTACCTCAATTCCCACAACGCCGCTCGAGCAGCAGTAGGCGTTGGTCCCTTGACGTGGGATGACAATGTAGCAGGCTATGCACAAAACTACGCCAACCAACATGTTGGCGACTGCAATCTCGTGCACTCCGGTGGGCCATACGGTGAAAACCTTGCCATGAGCACTGGTGACATGTCGGGAACAGCGGCTGTGGACCTGTGGGTGGCGGAGAAAGCCGACTACAGTTATGAGTCGAACTCGTGTGCTGCTGGAAAGGTGTGTGGGCATTATACACAGGTGGTTTGGCGTAACTCGGCTCGTGTAGGGTGCGCAAAAGTGAGGTGCAGCAGTGGGGGTACCTTCATTGGATGCAACTATGATCCCCCAGGCAACTATGTTGGGGAGAAGCCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

162

Amino Acids

16.96

Weight (kDa)

5.33

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	32 - 149	2.1e-19	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14580 AT2G14610 AT3G19690 AT4G33720 AT4G33730
fragaria_vesca	FvH4_2g02860 FvH4_2g02912
malus_domestica	MD05G1108800.v1.1 MD05G1109100.v1.1 MD05G1109700.v1.1 MD05G1110000.v1.1
prunus_persica	Prupe.8G102800_v2.0.a1 Prupe.8G152900_v2.0.a1 Prupe.8G153100_v2.0.a1 Prupe.8G153200_v2.0.a1 Prupe.8G153500_v2.0.a1 Prupe.8G153700_v2.0.a1 Prupe.8G153800_v2.0.a1
pyrus_communis	pycom05g10520
rosa_chinensis	RchiOBHm_Chr6g0247671 RchiOBHm_Chr6g0247681 RchiOBHm_Chr6g0264301
rosa_laevigata	RLG00000014266 RLG00000014268 RLG00000014270 RLG00000015186 RLG00000015187 RLG00000036357 RLG00000036358 RLG00000036359 RLG00000036360
rosa_multiflora	Rmu_co8203636.1_g000001 Rmu_sc0000147.1_g000017 Rmu_sc0000147.1_g000029 Rmu_sc0003092.1_g000033 Rmu_sc0013122.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431690 Rroxscaffold_7G00213790 Rroxscaffold_7G00213800
rosa_rugosa	Rorug05G0527800 Rorug05G0527900 Rorug06G0011700
rosa_samantha	Rh6AG042300 Rh6AG131500 Rh6BG037200 Rh6BG128300 Rh6CG036300 Rh6CG036500 Rh6CG126700 Rh6DG033300 Rh6DG033500 Rh6DG113800
rosa_wichuraiana	Rw6G003660 Rw6G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	400
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	425
AccBSI	CCGCTC	1 cut(s)	113
AciI	CCGC	3 cut(s)	111, 275, 296
AclWI	GGATC	1 cut(s)	443
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	2 cut(s)	144, 292
AflIII	ACRYGT	2 cut(s)	190, 261
AjiI	CACGTC	1 cut(s)	144
AjnI	CCWGG	1 cut(s)	454
AleI	CACNNNNGTG	1 cut(s)	219
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw21I	GWGCWC	2 cut(s)	216, 254
Alw44I	GTGCAC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	443
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	1 cut(s)	224
ApaLI	GTGCAC	1 cut(s)	212
ApeKI	GCWGC	3 cut(s)	119, 335, 414
Asp718I	GGTACC	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	3 cut(s)	134, 224, 283
AsuHPI	GGTGA	2 cut(s)	245, 269
AvaI	CYCGRG	1 cut(s)	114
AvaII	GGWCC	2 cut(s)	134, 283
BaeGI	GKGCMC	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	425
BauI	CACGAG	3 cut(s)	209, 328, 387
Bbv12I	GWGCWC	2 cut(s)	216, 254
BbvI	GCAGC	3 cut(s)	131, 322, 426
BciT130I	CCWGG	1 cut(s)	456
BfaI	CTAG	2 cut(s)	23, 484
BfmI	CTRYAG	1 cut(s)	310
BisI	GCNGC	5 cut(s)	111, 120, 276, 336, 415
BlpI	GCTNAGC	1 cut(s)	46
BlsI	GCNGC	5 cut(s)	112, 121, 277, 337, 416
Bme1390I	CCNGG	1 cut(s)	456
Bme18I	GGWCC	2 cut(s)	134, 283
BmeT110I	CYCGRG	1 cut(s)	114
BmgBI	CACGTC	1 cut(s)	144
BmgT120I	GGNCC	3 cut(s)	134, 224, 283
BmiI	GGNNCC	2 cut(s)	136, 427
BmrFI	CCNGG	1 cut(s)	456
BmsI	GCATC	1 cut(s)	428
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
Bpu1102I	GCTNAGC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	454
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 292
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	454
BseGI	GGATG	2 cut(s)	154, 443
BseLI	CCNNNNNNNGG	2 cut(s)	144, 292
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	259
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	3 cut(s)	131, 322, 426
BsgI	GTGCAG	1 cut(s)	433
BshFI	GGCC	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	425
BsiHKAI	GWGCWC	2 cut(s)	216, 254
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	2 cut(s)	144, 292
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	226
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	216, 254
Bsp143I	GATC	1 cut(s)	448
Bsp1720I	GCTNAGC	1 cut(s)	46
BspACI	CCGC	3 cut(s)	111, 275, 296
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	136, 427
BspPI	GGATC	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	425
BsrBI	CCGCTC	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	454
BssMI	GATC	1 cut(s)	448
BssSI	CACGAG	3 cut(s)	209, 328, 387
Bst2BI	CACGAG	3 cut(s)	209, 328, 387
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	233, 314
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	46
BstF5I	GGATG	2 cut(s)	154, 443
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	1 cut(s)	451
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 119, 167, 302
BstNI	CCWGG	1 cut(s)	456
BstNSI	RCATGY	2 cut(s)	194, 265
BstSCI	CCNGG	1 cut(s)	454
BstSFI	CTRYAG	1 cut(s)	310
BstSLI	GKGCMC	1 cut(s)	216
BstV1I	GCAGC	3 cut(s)	131, 322, 426
BstXI	CCANNNNNNTGG	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	154, 443
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	2 cut(s)	252, 424
Cac8I	GCNNGC	1 cut(s)	163
CaiI	CAGNNNCTG	1 cut(s)	278
CfoI	GCGC	1 cut(s)	401
Cfr13I	GGNCC	3 cut(s)	134, 224, 283
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	4 cut(s)	68, 191, 247, 262
CviJI	RGCY	9 cut(s)	26, 45, 50, 165, 226, 278, 305, 386, 478
CviKI_1	RGCY	9 cut(s)	26, 45, 50, 165, 226, 278, 305, 386, 478
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
EciI	GGCGGA	1 cut(s)	311
Eco47I	GGWCC	2 cut(s)	134, 283
Eco88I	CYCGRG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	454
FaeI	CATG	4 cut(s)	71, 194, 250, 265
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	4 cut(s)	67, 190, 246, 261
Fnu4HI	GCNGC	5 cut(s)	111, 120, 276, 336, 415
FokI	GGATG	2 cut(s)	161, 450
Fsp4HI	GCNGC	5 cut(s)	111, 120, 276, 336, 415
FspBI	CTAG	2 cut(s)	23, 484
FspI	TGCGCA	1 cut(s)	400
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	5 cut(s)	111, 120, 276, 336, 415
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	1 cut(s)	219
HhaI	GCGC	1 cut(s)	401
Hin1II	CATG	4 cut(s)	71, 194, 250, 265
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	2 cut(s)	245, 269
Hpy166II	GTNNAC	2 cut(s)	214, 283
Hpy188III	TCNNGA	1 cut(s)	267
Hpy8I	GTNNAC	2 cut(s)	214, 283
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	2 cut(s)	233, 314
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	6 cut(s)	12, 170, 204, 214, 414, 441
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 119, 167, 302
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	4 cut(s)	71, 194, 250, 265
HspAI	GCGC	1 cut(s)	399
KpnI	GGTACC	1 cut(s)	429
Kzo9I	GATC	1 cut(s)	448
LpnPI	CCDG	8 cut(s)	147, 232, 240, 299, 324, 350, 441, 468
Lsp1109I	GCAGC	3 cut(s)	131, 322, 426
LweI	GCATC	1 cut(s)	428
MaeI	CTAG	2 cut(s)	23, 484
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	257, 377
MalI	GATC	1 cut(s)	450
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	1 cut(s)	448
MhlI	GDGCHC	2 cut(s)	216, 254
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	3 cut(s)	73, 104, 402
MslI	CAYNNNNRTG	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	4 cut(s)	116, 119, 167, 302
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	4 cut(s)	71, 194, 250, 265
NlaIV	GGNNCC	2 cut(s)	136, 427
NmeAIII	GCCGAG	1 cut(s)	362
NmuCI	GTSAC	1 cut(s)	257
NsbI	TGCGCA	1 cut(s)	400
NspI	RCATGY	2 cut(s)	194, 265
OliI	CACNNNNGTG	1 cut(s)	219
PaeR7I	CTCGAG	1 cut(s)	114
PciI	ACATGT	2 cut(s)	190, 261
PkrI	GCNGC	5 cut(s)	112, 121, 277, 337, 416
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PscI	ACATGT	2 cut(s)	190, 261
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	2 cut(s)	136, 427
PspPI	GGNCC	3 cut(s)	134, 224, 283
PspXI	VCTCGAGB	1 cut(s)	114
PstNI	CAGNNNCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
RseI	CAYNNNNRTG	1 cut(s)	219
SatI	GCNGC	5 cut(s)	111, 120, 276, 336, 415
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	3 cut(s)	134, 224, 283
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	456
SduI	GDGCHC	2 cut(s)	216, 254
SetI	ASST	9 cut(s)	28, 96, 146, 243, 288, 348, 369, 413, 431
SfaNI	GCATC	1 cut(s)	428
SfcI	CTRYAG	1 cut(s)	310
Sfr274I	CTCGAG	1 cut(s)	114
SinI	GGWCC	2 cut(s)	134, 283
SlaI	CTCGAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	3 cut(s)	111, 275, 296
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	2 cut(s)	23, 484
StyD4I	CCNGG	1 cut(s)	454
TaaI	ACNGT	2 cut(s)	233, 314
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	2 cut(s)	115, 323
TasI	AATT	1 cut(s)	97
TauI	GCSGC	2 cut(s)	113, 278
TscAI	CASTG	2 cut(s)	259, 424
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	3 cut(s)	119, 335, 414
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	25, 421
TspRI	CASTG	2 cut(s)	259, 424
VneI	GTGCAC	1 cut(s)	212
VpaK11BI	GGWCC	2 cut(s)	134, 283
XceI	RCATGY	2 cut(s)	194, 265
XhoI	CTCGAG	1 cut(s)	114
XspI	CTAG	2 cut(s)	23, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.